| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 4,049,912 | IS2 (+) +5 bp | noncoding (14‑18/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3186096 = | NA (NA) | 36 (1.340) | 31/284 | 0.0 | 100% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 4049916 | 0 (0.000) | noncoding (18/109 nt) | spf | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent | |||||
| * | ? | NC_000913 | 4049912 = | 0 (0.000) | 26 (0.970) | 23/284 | 0.2 | 100% | noncoding (14/109 nt) | spf | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| ? | NC_000913 | = 4499511 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
GTAAGTAAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCC > NC_000913/4049778‑4050058 | gtaagtaaTCAACATAAGCTGTAACGTTTTGTGATGGCTATTAGAAAGTCCTATGCAACAACTGAAAAAAA‑TTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagac > 2:71906‑M2/1‑138 (MQ=255) gcgttcgagcattataacgaatggcatccgcctagtgcgctgggttgtcgctcgccacgggaatatctgcggcagcgggctcgtaatgggttaagtgataacagatgtctgggaatctaggggcaaatccaGTCATATGTTCt < 2:41367‑M1/12‑1 (MQ=255) tcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtggtaacagatgtctggagaggtaggggcaactccaGTAAGCTGTCCtatgt < 2:382357‑M1/16‑3 (MQ=255) gCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggcccc < 1:279703‑M2/143‑13 (MQ=255) aaaaTAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccct > 1:416936‑M2/1‑129 (MQ=255) gcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAAGATGTTCTATCTTTCa > 1:155568‑M1/124‑143 (MQ=255) ttataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAAGATGTTCTATCTTTCAGAc > 1:3931‑M1/121‑143 (MQ=255) ataacgaatggcatccgcatagcgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAAGATGTTCTATCTTTCAGACCt > 1:244894‑M1/119‑143 (MQ=255) gCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctc > 2:324302‑M2/1‑122 (MQ=255) cTGTCACGTTTTGTGATGGCTATTAGACATTCCTATGCAACAACTGAAAAAAACTTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggcccccagaatctcc < 2:384636‑M2/143‑23 (MQ=255) cgtCACGTTTTGTCATGGCTATTAGAAATTCATATGCAACAACTGAAAAAAAATTACAAAAAGTGCTGTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctcca > 1:114389‑M2/2‑120 (MQ=255) gTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccag > 1:191402‑M2/1‑119 (MQ=255) ctcgtGTTGTGGTGGCTATTAGAAATTCATATGGAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagac > 2:233584‑M2/3‑117 (MQ=255) cGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGACAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaa > 2:9317‑M2/1‑115 (MQ=255) cGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaa < 1:257359‑M2/143‑29 (MQ=255) ttttGGGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaacc > 2:107446‑M2/1‑113 (MQ=255) gcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttggaatgggttaagtgataacagatgtctggaaatataggggcaaatgcaGTAAGATGTTCTATCTTTCCGACCTGTGACTTCAc < 2:459131‑M1/35‑1 (MQ=255) ttGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaaccaa < 2:309226‑M2/143‑33 (MQ=255) aTGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaaccaatatca < 2:67878‑M2/143‑38 (MQ=255) aTGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAAATGAACAAAAAAGAGACAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggcaccctgagtctccatacaaccaatctca < 2:461524‑M2/143‑38 (MQ=255) tagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGa < 1:170738‑M1/44‑1 (MQ=255) gtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGAtt > 2:482372‑M1/98‑143 (MQ=255) gtgcgcggggttatcgctcgccacgggaatagctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGAtt > 1:130814‑M1/98‑143 (MQ=255) tATTAGGAGGTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaaccaatatcacttaa > 2:254415‑M2/1‑101 (MQ=255) tATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaaccaatatcacttaa < 1:11413‑M2/143‑43 (MQ=255) gcgctggattatcgcgcgccacgggaataactgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTg > 1:20665‑M1/96‑143 (MQ=255) gAAATCCCCACCCAACAACTGAGAAAAAATTACAAAAAGCGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataag > 1:430093‑M2/1‑96 (MQ=255) aaaaacctacacAACAACTGAAAAAAAAATACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagt > 1:23228‑M2/6‑95 (MQ=255) aaTTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtg > 2:331466‑M2/1‑94 (MQ=255) gcgctcgccaggggaatatcggcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATAttt > 2:424218‑M1/85‑143 (MQ=255) tATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAAGTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtc > 1:459878‑M2/1‑88 (MQ=255) tATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAACTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaacatccagacaaccaatcacccttaaacaagcgacagtc < 2:154646‑M2/143‑56 (MQ=255) ctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTtaa < 1:77602‑M1/62‑2 (MQ=255) ccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatctaGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAgccgc > 2:242403‑M1/78‑143 (MQ=255) caacTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatac > 1:81852‑M2/1‑81 (MQ=255) aaaaaaTTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttt > 1:156612‑M2/1‑73 (MQ=255) aaaaaaTTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttt > 1:268971‑M2/1‑73 (MQ=255) atctgcggcagcgggcttgtaatgggttaagggataacagatgtctggaaatataggggcaaatccaGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCcagtcagt > 1:33593‑M1/68‑143 (MQ=255) agctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCcagtcagt > 1:287419‑M1/68‑143 (MQ=255) ttACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTATTGCGGTAAGtagactggccccctgaatctccagacaaccaatattcttttaataagtgatagtcttaatactagtttttagacta > 2:123800‑M2/1‑67 (MQ=255) ttACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagacta > 2:461085‑M2/1‑67 (MQ=255) ttACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagacta > 1:321124‑M2/1‑67 (MQ=255) ggcttgtaatgggtgaagtgataacagatgtctggaaatataggggcaaatccaGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCg > 1:78247‑M1/55‑143 (MQ=255) gTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattgga > 2:211501‑M2/1‑58 (MQ=255) ttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTAAGATGTTCTCTCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAATCAGTAATGACTAGGGcgtat < 1:176435‑M1/92‑3 (MQ=255) gCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggaga > 1:67878‑M2/1‑56 (MQ=255) gggttaagtgataacagatgtctggaaatataggggcaaatccaGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTg < 2:459149‑M1/99‑1 (MQ=255) ggataagtgataacagatgtctggaaatataggcgtaaatccaGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGTCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTCGGGCGTGTTTTACTgg < 2:465334‑M1/100‑1 (MQ=255) aaacaaGAGTAAAGTTAGTAGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtc > 1:157525‑M2/1‑40 (MQ=255) cagatgtctggaaatataggggcaaatccaGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCCGTCAGTAATGACTGGGGCGGTTTTTATTGGGCgaaagaaaagg < 2:248713‑M1/113‑2 (MQ=255) gatgtctggaaatataggggcaaatccaGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATc > 2:170738‑M1/29‑143 (MQ=255) tAGAGTTAGTCGCGTAGGGTACAGAGGTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccg > 2:25165‑M2/1‑31 (MQ=255) tctggaaatataggggcaaatccaGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTa < 2:90719‑M1/119‑1 (MQ=255) tggaaatataggggcaaatccaGTAAGATGTGCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTAAATAATGACTGGGGCGTTTGTAATTGGGCAAAAGAAAAGATCCGTAAt < 2:134797‑M1/121‑1 (MQ=255) acatataggggcaaatccaGTAAGATGTTCTATCTTTCAGACCTTGTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTGCTGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAGTGcc < 2:317326‑M1/124‑1 (MQ=255) actccaGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGt > 1:155370‑M1/7‑143 (MQ=255) cAGAGGTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttcgactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtacc < 1:400736‑M2/143‑134 (MQ=255) agagGTAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggcgggagaaacgcggacggcggacca < 1:53591‑M2/143‑135 (MQ=255) aGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATc < 2:347845‑M1/142‑1 (MQ=255) tAAGtagactggccctctgaatctccagacaaccaatatcacttaaataagtgatagtgttaatactagtttttagactagtcagtggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacag > 1:234558‑M2/1‑4 (MQ=255) tAAGATGTTCTATCTTTCAGGCCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAg < 1:411806/143‑1 (MQ=255) aGtagactggcccccggaatctccagacaaccaatatcgcttaaataagtgagagtcttaagactagtttttagactagtcattggagaacagatgattgatgtctgagggccggagaaacgcagacggcgtaccacacagga > 2:116710‑M2/1‑2 (MQ=255) gtagcctggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaa > 1:299818‑M2/1‑1 (MQ=255) | GTAAGTAAGCAACATAAGCTGTCACGTTTTGTGATGGCTATTAGAAATTCCTATGCAACAACTGAAAAAAAATTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCC > NC_000913/4049778‑4050058 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |