Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp 100% intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)23 (0.320) 18/410 NT 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)52 (0.710) 36/410 NT 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

ATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCAC  >  NC_000913/1979248‑1979724
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                              
tgaaaaactataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                                                                                                                >  1:917651‑M1/239‑239 (MQ=255)
tgaaaaacgataaccaactggcgattttattcacgctggccaaactgtttcgggcggaccaaatgatacgtcagtgggagagatcgtactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgagtcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                                                                                                                >  2:710376‑M1/239‑239 (MQ=255)
 taaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaattatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                                                                                                                >  1:410229‑M1/238‑238 (MQ=255)
 gaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                                                                                                                >  1:623700‑M1/238‑238 (MQ=255)
 gaaaaacgataaccaacgggagatgttattcacggtggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                                                                                                                               >  1:493935‑M1/238‑239 (MQ=255)
   aaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                                                                                                             >  2:513453‑M1/236‑239 (MQ=255)
    aaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccca                                                                                                                                                                                                                                               <  2:336228‑M1/2‑2 (MQ=255)
    aaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                                                                                                                               >  1:336228‑M1/235‑236 (MQ=255)
         ataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattagcaccttcccaaaaaaagg                                                                                                                                                                                                                                       <  2:924275‑M1/10‑10 (MQ=255)
         ataaccaactggcgatgttaatcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAAt                                                                                                                                                                                                                                       >  1:367300‑M1/230‑239 (MQ=255)
            caattacttaacataaatgtataAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggggc                                                                                                                                                                                                                                    >  1:337093‑M1/12‑230 (MQ=255)
                 ctggcgtttttattcccgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaa                                                                                                                                                                                                                               >  2:1013690‑M1/222‑239 (MQ=255)
                           ttttcacgcttgcccacctttttcgggcggtacaaatgagtcgtcagtgggatagatctcactaaagactggggataacggcttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                                                                                                                     >  2:139888‑M1/212‑239 (MQ=255)
                           tattcccgttgtcctacctgttgcgggtggaccaaatgattcttctgtgggatagatcgcactaaaaactgggtataacgccttaaatggcgaagaaacggtctaaataggatgaatcaaagcatgtacgggagaaaaactcggcacaaacatgaagaaatgaaatgactgagtcagccgagaagaatgcccccgcttatacgcacctaccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                                                                                                                     >  2:294004‑M1/212‑239 (MQ=255)
                           tattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                                                                                                                     >  1:955576‑M1/212‑239 (MQ=255)
                           tattcacgctggcacacctgttgcggggggaccaaatgatacggcagtgggagagatctcactaaaaacgggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                                                                                                                     >  2:57411‑M1/212‑239 (MQ=255)
                            aTGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgata                                                                                                                                                                                                                    >  1:543028‑M1/1‑214 (MQ=255)
                                  gctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAAAAATCAACtta                                                                                                                                                                                                              <  1:139888‑M1/35‑1 (MQ=255)
                                       caaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgt                                                                                                                                                                                                          >  1:79837‑M1/200‑238 (MQ=255)
                                       aTACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCCCAAAAAACTAAggaaggtgcgaaaaaacccctgatataaaaccaatt                                                                                                                                                                                                         >  2:646750‑M1/1‑203 (MQ=255)
                                               gttttgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatataggatcaagtttgccttc                                                                                                                                                                                                 >  1:798387‑M1/1‑195 (MQ=255)
                                                       ggacaaaatgttacgtcagtgggagagatctcactaaaaacgggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAc                                                                                                                                                                                          >  2:134333‑M1/184‑238 (MQ=255)
                                                        ttaTTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca                                                                                                                                                                                         <  1:245963‑M1/237‑53 (MQ=255)
                                                         accaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatg                                                                                                                                                                                                           <  1:329393‑M1/38‑1 (MQ=255)
                                                         accaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACata                                                                                                                                                                                       <  1:134333‑M1/58‑1 (MQ=255)
                                                            aaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                                                                                                                            >  1:116615‑M1/179‑183 (MQ=255)
                                                                aTCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtcc                                                                                                                                                                                                                          <  1:204472‑M1/197‑20 (MQ=255)
                                                                aTCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATAATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtcc                                                                                                                                                                                                                          >  2:204472‑M1/1‑178 (MQ=255)
                                                                 tCTGGTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                                                                                                               <  1:880788‑M1/239‑63 (MQ=255)
                                                                     ttAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca                                                                                                                                                                           >  1:839479‑M1/1‑173 (MQ=255)
                                                                     ttAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttc                                                                                                                                                                            >  1:592489‑M1/1‑173 (MQ=255)
                                                                     ttAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatca                                                                                                                                                                                                            >  1:459785‑M1/1‑173 (MQ=255)
                                                                     ttAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatca                                                                                                                                                                                                            <  2:459785‑M1/206‑34 (MQ=255)
                                                                     ttAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAgga                                                                                                                                                                                                                                          <  1:416658‑M1/176‑4 (MQ=255)
                                                                     ttAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAATCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAgga                                                                                                                                                                                                                                          >  2:416658‑M1/1‑173 (MQ=255)
                                                                        agtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGtt                                                                                                                                                                        <  1:434100‑M1/73‑1 (MQ=255)
                                                                               gagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACt                                                                                                                                                                                                                >  1:175706‑M1/160‑192 (MQ=255)
                                                                               gagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACt                                                                                                                                                                                                                <  2:175706‑M1/33‑1 (MQ=255)
                                                                                 gatctcactaaaaacttgggtgaacacattaaagggagaaaaacatgtctaaatagactgattcaaggaagttacgggagaaaaaatcagcactaacaaaaagaaatgaaatgactgatgcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCgg                                                                                                                                                                >  2:742630‑M1/158‑238 (MQ=255)
                                                                                  atctccataaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGgag                                                                                                                                                              >  1:795036‑M1/157‑239 (MQ=255)
                                                                                          aaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTa                                                                                                                                                      >  1:223204‑M1/149‑239 (MQ=255)
                                                                                            aaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTaca                                                                                                                                                    >  1:66469‑M1/147‑239 (MQ=255)
                                                                                                  gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAATAAAGGc                                                                                                                                                                                                                           >  1:703416‑M1/141‑162 (MQ=255)
                                                                                                          aaCAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt                                                                                                                                      <  1:1022986‑M1/239‑104 (MQ=255)
                                                                                                                         aaTGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgcgatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctccgccgccagtgatttcagaagaaacgccc                                                                                                                        >  1:505335‑M1/1‑121 (MQ=255)
                                                                                                                                tGTTGCGCACAGTCAAAATAACTCACCTGAAATAATCATCTGCTATAAATAATCACATTCATTCAATACCAGATAAGCTATTTTTAAACAGACTCTTACCGCACAACAAACTGAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgacagac                                                                                                                 <  2:767678‑M1/238‑125 (MQ=255)
                                                                                                                                     cgcACAGTCAAAATAACTCACCGTAACTAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttaatcatgagtcatcaacttaccttcgccgacagtgaattcaccagtaagcgccgcaagaccagaaa                                                                                                           >  2:1000294‑M1/1‑109 (MQ=255)
                                                                                                                                          ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcgccttccCTa                                                                                                                                                                                                                                              >  2:304306‑M1/101‑103 (MQ=255)
                                                                                                                                          ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa                                                                                                                                                                                                                                              <  1:304306‑M1/3‑1 (MQ=255)
                                                                                                                                          aGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgagaacaagtccctgatatgagatcatgtttgtcatcttgagccatagaaaaaggttcatcatgattcatcaacttaccttcgccgacagtgaattcagcagaaagcaccgtcagacaagaaaagaga                                                                                                      >  2:520528‑M1/1‑104 (MQ=255)
                                                                                                                                          aGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACCTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaag                                                                                                                                                                                                                             <  1:981760‑M1/120‑17 (MQ=255)
                                                                                                                                          aGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACCTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaag                                                                                                                                                                                                                             >  2:981760‑M1/1‑104 (MQ=255)
                                                                                                                                              ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTaca                                                                                                                                                    <  2:454977‑M1/93‑1 (MQ=255)
                                                                                                                                              ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTaca                                                                                                                                                    >  1:454977‑M1/97‑189 (MQ=255)
                                                                                                                                                    accccccgtaaaTAATTATTTGCTATAAATAATCCCTTTCATGCAAAACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaaggccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc                                                                                            <  2:337093‑M1/234‑146 (MQ=255)
                                                                                                                                                    aCTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc                                                                                            <  1:726380‑M1/239‑146 (MQ=255)
                                                                                                                                                    aCTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaag                                                                                                                                                                                                                             <  2:425833‑M1/110‑17 (MQ=255)
                                                                                                                                                    aCTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaag                                                                                                                                                                                                                             >  1:425833‑M1/1‑94 (MQ=255)
                                                                                                                                                      tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccc                                                                                                                                                                                                                         <  2:66818‑M1/112‑21 (MQ=255)
                                                                                                                                                      tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccc                                                                                                                                                                                                                         >  1:66818‑M1/1‑92 (MQ=255)
                                                                                                                                                         tacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaacaa                                                                                                                                                                                                                      <  1:1320‑M1/27‑1 (MQ=255)
                                                                                                                                                         tacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaacaa                                                                                                                                                                                                                      >  2:1320‑M1/86‑112 (MQ=255)
                                                                                                                                                          cGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcat                                                                                      >  1:682158‑M1/1‑88 (MQ=255)
                                                                                                                                                          cGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt                                                                                                                                           >  2:731946‑M1/1‑88 (MQ=255)
                                                                                                                                                          cGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt                                                                                                                                           <  1:731946‑M1/186‑99 (MQ=255)
                                                                                                                                                              aataatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccc                                                                                                                                                                                                                         <  2:608057‑M1/104‑21 (MQ=255)
                                                                                                                                                              aataatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccc                                                                                                                                                                                                                         >  1:608057‑M1/1‑84 (MQ=255)
                                                                                                                                                                          cTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgcca                                                                      <  1:646750‑M1/239‑168 (MQ=255)
                                                                                                                                                                          cTAAAAAAAATTCCTTTCAATCAAAACCAAATAAGCTATGTTTAAACGGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgggaccatgtttggcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgc                                                                        <  2:554310‑M1/237‑166 (MQ=255)
                                                                                                                                                                                    tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagcgattttcttgtcccgcatggagcagattctgccatggcaaaa                                                              >  1:554310‑M1/1‑62 (MQ=255)
                                                                                                                                                                                    tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagccgattctgccatggcaaaaca                                                            >  1:375736‑M1/1‑62 (MQ=255)
                                                                                                                                                                                    tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttcattgtcccgcatggagcagattctgccatggcaaaaca                                                            >  1:701780‑M1/1‑62 (MQ=255)
                                                                                                                                                                                         ttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgcaatggcaaaacatggtg                                                       >  1:608233‑M1/1‑57 (MQ=255)
                                                                                                                                                                                                  tACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgccagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagccatc                                              >  1:81745‑M1/1‑48 (MQ=255)
                                                                                                                                                                                                  tACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcttggagcagattctgccatggcaaaacatggtggaagtcatc                                              >  1:233491‑M1/1‑48 (MQ=255)
                                                                                                                                                                                                  tACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaaactgggggaagtcatg                                              >  1:154057‑M1/1‑48 (MQ=255)
                                                                                                                                                                                                          aaGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaa                                                              <  1:536483‑M1/215‑176 (MQ=255)
                                                                                                                                                                                                          aaGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaa                                                              >  2:536483‑M1/1‑40 (MQ=255)
                                                                                                                                                                                                           agttttttttaaacaGCCCCTTACCGAACAACAAACTAAggaaggttcgaacaagtccctgatatgagatcatgtttgtcatcgggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttt                                     <  2:154057‑M1/234‑201 (MQ=255)
                                                                                                                                                                                                           aGCTATTTTTAAACAGACCCTTACCGCACAACAAACTAAggaaggtgcgaacaagcccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttt                                     <  1:462389‑M1/239‑201 (MQ=255)
                                                                                                                                                                                                           aGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttt                                     <  1:479006‑M1/239‑201 (MQ=255)
                                                                                                                                                                                                            gCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaccaagtccctgatatgagatcatgtttgtcatatgaagccatagaacagggttcatcatgcgtcatcaacttaccttcgccgacagggaattcagcagacagcgccgtcagaccagaaaagcgattttcttgtccccctcgaggcagattcacccatggcaaaacatagggtaaagcatcgaaccgtttt                                    >  2:273945‑M1/1‑38 (MQ=255)
                                                                                                                                                                                                            gCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagcaatcgggccgttta                                    >  2:187676‑M1/1‑38 (MQ=255)
                                                                                                                                                                                                            gCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggag                                                                                  >  2:1007208‑M1/1‑38 (MQ=255)
                                                                                                                                                                                                            gCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggag                                                                                  <  1:1007208‑M1/193‑156 (MQ=255)
                                                                                                                                                                                                                      aaCAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcat                                                                                      <  2:446463‑M1/179‑152 (MQ=255)
                                                                                                                                                                                                                      aaCAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcat                                                                                      >  1:446463‑M1/1‑28 (MQ=255)
                                                                                                                                                                                                                          gACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggt                      >  2:235216‑M1/1‑24 (MQ=255)
                                                                                                                                                                                                                           acacTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggaa                     >  1:892261‑M1/1‑23 (MQ=255)
                                                                                                                                                                                                                                             aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccggcgaccttatc   <  1:187676‑M1/239‑235 (MQ=255)
                                                                                                                                                                                                                                              cTAAggaaggtgccaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccggcgaccttatcc  <  1:368765‑M1/239‑236 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                              
ATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGCTTTAATGTCAC  >  NC_000913/1979248‑1979724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.