Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp	100%		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979270	1979278	9–776	49 [0]	[5] 54	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	48 (0.570)	38/416	NT	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

TCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCA  >  NC_000913/1979043‑1979508                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                       ccccggtaaaaaatattttgttttagaatatttgcgataagtggcaataaccaaaaccaccttttttgtttaatatggccttacaaatagaaatgggtctttacccttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtat                                                                                                                                                                                                                                      <  2:441517‑M2/3‑1 (MQ=255)                                ttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCaa                                                                                                                                                                                                      >  1:1168975‑M2/206‑239 (MQ=255)                                          ctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcaccaaaaacactcaattacttacaataaatgTATAAGTCTTACTTTTGTTTTGGTTGTA‑TTTCAATCTGTTaaaa                                                                                                                                                                                            >  1:601963‑M2/196‑239 (MQ=255)                                          atgcaaatagcagagccaccttttttgtttaatttgtccatacaaatggaaatggggctttacacttaactaagatttttccgaaatcgacgctactttactcggaactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaatcactcaattgcttaacataaatgAATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTaaaa                                                                                                                                                                                            <  2:1246009‑M2/44‑1 (MQ=255)                                                 tagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGttttt                                                                                                                                                                                     <  1:190575‑M2/51‑1 (MQ=255)                                                 aagcagaaccccctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGttttt                                                                                                                                                                                     <  1:344304‑M2/51‑1 (MQ=255)                                                 aagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGttttt                                                                                                                                                                                     <  1:1192986‑M2/51‑1 (MQ=255)                                                  agcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcccacaaaacactcaattacttaacataaatgTATAATTCATACTTTTGTTTTGGGTGTA‑TTTCAATCCTTTAAAAAGttttt                                                                                                                                                                                     >  2:296751‑M2/188‑238 (MQ=255)                                                       aaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgtg                                                                                                                                                                                                               >  1:407988‑M2/183‑208 (MQ=255)                                                       aaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacaatcaattacttacaataaatgTATAAGTCAAACTTTTGTTTTGGGTGTA‑TTTCAAACTGTTAaaaagattttggaaa                                                                                                                                                                                >  2:1138751‑M2/183‑233 (MQ=255)                                                       aaccacctttttggtttaaaatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgtg                                                                                                                                                                                                               <  2:407988‑M2/26‑1 (MQ=255)                                                                       taatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggagaggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTCTAAGTCATACTTTTGTTTTGGTTGAC‑TTTCAATCTGTTAAAAAGTTTTtcgctaccctcgctgtccctaat                                                                                                                                                               >  1:463576‑M2/167‑229 (MQ=255)                                                                           attgccttacaaagagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                                                                                                           <  1:1220307‑M2/77‑1 (MQ=255)                                                                                   acaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGGGTA‑TTTAAATCTGTTAAAAAGTTTTTACTAACGTTAAAAAGCAAAAATACAACGggaaaa                                                                                                                                                   >  2:461819‑M2/155‑237 (MQ=255)                                                                                        tagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGAAAGCAAAAATGAAAAAGAAAAAatcaa                                                                                                                                              >  2:609358‑M2/150‑237 (MQ=255)                                                                                             atgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg                                                                                                                                         >  1:687804‑M2/145‑239 (MQ=255)                                                                                                ggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGAAAAACTGAACCAGGAATAATCGAAATGGGAt                                                                                                                                      >  1:1163401‑M2/142‑239 (MQ=255)                                                                                                   ctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGtt                                                                                                                                   <  1:375550‑M2/101‑1 (MQ=255)                                                                                                      tacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGttggg                                                                                                                                >  1:481627‑M2/136‑237 (MQ=255)                                                                                                         ccttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcac                                                                                                                             <  1:998365‑M2/107‑1 (MQ=255)                                                                                                          cttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                                                                                                            <  1:461819‑M2/108‑1 (MQ=255)                                                                                                          cttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacaaaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                                                                                                            <  1:278412‑M2/108‑1 (MQ=255)                                                                                                          cgtatctaagatttttcctaaatcgacccaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                                                                                                            <  1:1157129‑M2/108‑1 (MQ=255)                                                                                                            tatttaagatttttccgaaagcgacgcaactgtccccctcccgaaacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacacgcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑GTTCAATCTGTCAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                                                                                                                          <  2:481627‑M2/110‑1 (MQ=255)                                                                                                            tatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCCCAGt                                                                                                                          >  1:631636‑M2/130‑239 (MQ=255)                                                                                                            tatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                                                                                                                          >  1:190177‑M2/130‑239 (MQ=255)                                                                                                             atctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACCCTAGCAAGCAAAAATGAAAAAGGAATAATCgaaatgggaggtggggacaagga                                                                                                                         >  2:1095422‑M2/129‑228 (MQ=255)                                                                                                                   gatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGtt                                                                                                                                   >  1:105865‑M2/123‑223 (MQ=255)                                                                                                                        ttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcgc                                                                                                                               >  1:757172‑M2/118‑222 (MQ=255)                                                                                                                        ttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcgc                                                                                                                               <  2:757172‑M2/105‑1 (MQ=255)                                                                                                                          cctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAcc                                                                                                            <  1:1108877‑M2/124‑1 (MQ=255)                                                                                                                                       aactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat                                                                                                <  1:1095422‑M2/136‑1 (MQ=255)                                                                                                                                             actcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCtat                                                                                         <  1:296751‑M2/143‑1 (MQ=255)                                                                                                                                                 gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATATGctataact                                                                                     >  1:394455‑M2/93‑237 (MQ=255)                                                                                                                                                    cacacaccaccatacaacggaggggggctgtgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATTCTTTGGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAaataat                                                                                  <  2:1168975‑M2/150‑1 (MQ=255)                                                                                                                                                        cacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACt                                                                              >  1:188212‑M2/86‑239 (MQ=255)                                                                                                                                                          accacatacaaaggaggggggctgcgattttcaataatgcgggatgcagatcacaaaaaacactcaatttcttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACttt                                                                            <  2:631636‑M2/156‑1 (MQ=255)                                                                                                                                                           gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat                                                                                                >  1:1285952‑M2/83‑218 (MQ=255)                                                                                                                                                             acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTAACCGTAAATAATCATCTGCTATAACTAATCACTTTCAt                                                                         >  1:1081955‑M2/81‑239 (MQ=255)                                                                                                                                                              catacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATg                                                                        <  1:1018107‑M2/160‑1 (MQ=255)                                                                                                                                                                      ggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAaataat                                                                                  <  1:397721‑M2/150‑1 (MQ=255)                                                                                                                                                                         ggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCa                                                                                >  1:1140361‑M2/69‑220 (MQ=255)                                                                                                                                                                                       ttcaagaaagcgttatgcagatcacacaaaacactcaattactgaacataaatgTAAAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat                                                                                                <  2:708939‑M2/136‑1 (MQ=255)                                                                                                                                                                                               tgggtgatgcagatcacaaaaaacccttaatttcttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACt                                       <  2:311287‑M2/193‑1 (MQ=255)                                                                                                                                                                                                 cgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaa                                                                                      >  1:708939‑M2/45‑190 (MQ=255)                                                                                                                                                                                                        cagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGcaca                              <  1:609358‑M2/202‑1 (MQ=255)                                                                                                                                                                                                                acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCCCAACAAACTa                      >  1:275932‑M2/30‑239 (MQ=255)                                                                                                                                                                                                                    aactatctattattaaacataaatgCATAAGTCTTTTTTTTGGTTTGGGTGTA‑TTTCAATTTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCAAAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAAAAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAactaagga                  <  2:1081955‑M2/214‑4 (MQ=255)                                                                                                                                                                                                                        ctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAacaaactaaggaaggt              <  1:650219‑M2/218‑8 (MQ=255)                                                                                                                                                                                                                              tacttaacataaatgTATAAGTCATACTTTTGGTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGTTACGATAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGAAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCTCAACAAACTAAggaaggtgcgagc        <  1:1047710‑M1/232‑14 (MQ=255)                                                                                                                                                                                                                                    acaTAAATGTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtcc  <  1:1138751‑M1/238‑20 (MQ=255)                                                                                                                                                                                                                                    acaTAAATGTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAAACTGTTAAGAAGTGTGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAGCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtcc  <  1:282485‑M1/238‑20 (MQ=255)                                                                                                                                                                                                                                    aataaaatgtaATTGTCCTTCTTTTGTTTTGAG‑GTATTTTCAATCTGTTAAAAAGGTTTTCGCTACGTTAGCAAACAATAATTAAACAGGAATCATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAACCCCTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACCCTTACCGCACAACAAACTAAtgaaggtgagaacaagtcc  <  2:601963‑M1/235‑20 (MQ=255)                                                                                                                                                                                                                                     cATAAATGTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtc   >  1:421679‑M1/1‑219 (MQ=255)                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                       TCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTA‑TTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCA  >  NC_000913/1979043‑1979508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑