New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =23 (0.600)7 (0.210) 7/252 3.2 20.5% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 34 (1.000)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.

GATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGC  >  NC_000913/1209481‑1209758
                                                                                                                                          |                                                                                                                                           
gATAAGCCTTTGCCAGTTCCGGTTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCAAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttt                                                                                                                                         <  1:543721/143‑1 (MQ=255)
         ttGTCAGTTTCGGGTATTCTTCAGCAGAAAAAGCGGCACCATGGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg                                                                                                                                <  1:282166/143‑1 (MQ=255)
           gCCAGTTCCGGGTATTCTTCAGCATAACAAGCGGCACCCTTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGTCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAGGAAAATgaa                                                                                                                              <  2:52413/143‑1 (MQ=255)
           gCCAGTTCCGGGTAGTCTTCAGCAGAAAAAGCGGCATCTTTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa                                                                                                                              <  1:190090/143‑1 (MQ=255)
                  ccGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATaa                                                                                                                       <  2:211436/143‑1 (MQ=255)
                     ggTATTCTTCAGCAGAAAAAGCCGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa                                                                                                                    <  1:118992/143‑1 (MQ=255)
                      gTATTCTGCAGGAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAg                                                                                                                   <  2:725008/143‑1 (MQ=255)
                       tATGCTTCAGCAGAAAAGGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCATCGTTTATGAAAATGAAGAAATAACAAGc                                                                                                                  <  2:618020/143‑1 (MQ=255)
                       gaTTCTGCAGCCGAAAAAGCGGCACCATTGCGTTTCTGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGc                                                                                                                  <  2:527298/142‑1 (MQ=255)
                            ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGCAACTGACGAAATACCAAGCaaaag                                                                                                             >  1:138291/1‑141 (MQ=255)
                            ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGACAACGGAACCGCGACACCAACAGGTAATGCAGAGCCTTCACCCAAACCACAGACAATGAAAATGAAGAAATAACAAGAAAATg                                                                                                             >  2:671276/1‑143 (MQ=255)
                                gcagAGCAAGCGGCGCGATGGCCTGTGAGCCAGGCGGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat                                                                                                         <  2:325776/143‑1 (MQ=255)
                                 cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCCGAAGGCCACGGAACCGAGACAACAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAAGAAGAAATAACAAGCAAATGGcatc                                                                                                        >  1:183430/1‑143 (MQ=255)
                                        ggCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCACATCCTTCTCCCAAACCAACGTTTATGAAAATGAATAAATAACAAGCAAATGGCATCATTCCTg                                                                                                 <  2:675717/142‑1 (MQ=255)
                                                  ttGCATTTCATCCATCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATTAAAATGAATTAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAg                                                                                       <  1:166244/143‑1 (MQ=255)
                                                  ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTATTACCAg                                                                                       >  2:186616/1‑143 (MQ=255)
                                                              ccgccTGTTGGCGGAGTGGCTGCAGGCCACGGAACTGCTACACCATCAGTTATTGCAGAGCCTTCTCCCAAACCACCTTTCATGTAAATGAAAAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa                                                                           <  2:10375/141‑1 (MQ=255)
                                                                      tGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt                                                                   <  1:682338/143‑1 (MQ=255)
                                                                         cGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGATTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc                                                                >  2:660238/1‑143 (MQ=255)
                                                                                gCTGAAGGCCACGGAACCGGGACACGAACAGGTACTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAc                                                         <  2:239696/143‑1 (MQ=255)
                                                                                 cTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTGTACAAGGGAGAATTAACATGCTTAATGGCTATGTAcg                                                        >  1:515540/1‑143 (MQ=255)
                                                                                     aGGCCACGGACCGGGGACAGCAACAGGTAATGCATAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTa                                                    <  2:509868/143‑1 (MQ=255)
                                                                                        ccACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATca                                                 >  2:586372/1‑143 (MQ=255)
                                                                                        ccACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTCAACATGCTTATTGGCTATGTACGCGTATca                                                 >  2:236353/1‑143 (MQ=255)
                                                                                          aCGGAAACGAGAAACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGCAAATAAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAGGCACATTGGCTATGAACGCGTATcaac                                               >  2:718530/1‑143 (MQ=255)
                                                                                             gAACCGGGACACTAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAATAAGTTAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa                                            <  1:201616/143‑1 (MQ=255)
                                                                                                  gggACACCAACAGGTAAGGGAGAGCTTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTATGCGTATCAACAAATGAcc                                       <  2:312919/143‑1 (MQ=255)
                                                                                                     acacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAGGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTAATAGACAATGTACGCGTATCAACAAATGACCAGa                                    >  1:29187/1‑143 (MQ=255)
                                                                                                      cacCAACAGGTAATGCAGAGCCTTCTCGCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa                                   <  2:720751/143‑1 (MQ=255)
                                                                                                         cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGATTATTGGGTACGTAAGAGTATCAGCAAAGGAGTAGAacac                                >  2:171769/1‑143 (MQ=255)
                                                                                                           aCAGGTAATGCAGAGCATTCTACCAAAACAACGATTAGGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGATTTTACAAGGGGGATTTAACATGCATATTGGCTATGTAGGCGGATCAACAACTGACCCGAACACAg                              >  2:573352/1‑143 (MQ=255)
                                                                                                               gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACAAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGCCCAGAACACAGATCt                          >  2:215872/1‑143 (MQ=255)
                                                                                                                tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAACTa                         >  2:372592/1‑143 (MQ=255)
                                                                                                                   tGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa                      >  2:189086/1‑143 (MQ=255)
                                                                                                                             tctcCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgcgc            <  1:284862/143‑1 (MQ=255)
                                                                                                                               tcCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTg          <  1:586372/143‑1 (MQ=255)
                                                                                                                                 ccAAACCAACGTTTATGACAATGAATAAATATCAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCACCAAATGACCAGAACCCAGATCTACAACGTAATGCGCTGaa        <  2:102110/143‑1 (MQ=255)
                                                                                                                                 ccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTCTTGGCTATGTACGAGTATCAACAAATGACCAGAAACCAGATCTACAACGTAATGCGATGaa        >  1:155269/1‑143 (MQ=255)
                                                                                                                                 ccAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGACATCATTACTGCTTTTACAAGAGGAATTTAACATGCTTATTGACTATGTACACGTAACAACAAATGACAAGAACACAGATCTACAACATAATGAGCAGaa        >  2:405087/1‑143 (MQ=255)
                                                                                                                                  cAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACGAGGGGGATTTACCATGCTTATTGGCTATGTAGNCGTATCAACAAATGACAAGAACACAGATCTCCAACGTAATgcgaggaag       >  1:377868/1‑137 (MQ=255)
                                                                                                                                       cgaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGc  <  1:516429/141‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                           
GATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGC  >  NC_000913/1209481‑1209758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.