Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503 1979278 776 34 [0] [0] 34 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)32 (0.890) 28/268 0.3 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGC  >  NC_000913/1978365‑1978641
                                                                                                                                         |                                                                                                                                           
ttttaGACTTATCTAAGTGGTTTCCTAAATCGACGCAACTGTACTCGTGACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGAGTGATGCAGATCACACAAAATACTCAATTACTTAACATAAATGtataa                                                                                                                                        <  2:262863‑M1/142‑6 (MQ=255)
cTTTACCCTTATCGAAGATTTTTTCTAAATCGACGCAACTGTACTCTTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                        <  2:93678‑M1/143‑6 (MQ=255)
 tttACACTTATCTAAGATTTTTCCGAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataaa                                                                                                                                       >  1:102385‑M1/1‑137 (MQ=255)
  ttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                                                                      <  1:579106‑M1/143‑8 (MQ=255)
        ttATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATACAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacc                                                                                                                                >  2:284627‑M1/1‑130 (MQ=255)
             tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                           >  1:199133‑M1/1‑125 (MQ=255)
             tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                           >  2:334333‑M1/1‑125 (MQ=255)
                 atctttcctAAAGCGACGCAACTGTACGCGTAACTACACGCACATACGACGGAGGGGGGCTGCGATTTTCATTAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                       <  2:391811‑M1/140‑23 (MQ=255)
                          aaaTCGAGGCAGTTGTACTCGTCCCTACACGCGCATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                              <  2:627990‑M1/143‑32 (MQ=255)
                             tCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                                                           >  1:446551‑M1/1‑109 (MQ=255)
                                        gaactCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAACACTCTCAATTACTTACCATAAATGtataagtcatacttttgttttgggtgtattttaatctgttaaaaa                                                                                                <  2:138674‑M1/141‑46 (MQ=255)
                                           cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttaatgtagggtatatatcaaaaagttaaaaagtt                                                                                             >  1:310184‑M1/1‑95 (MQ=255)
                                            tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                            >  2:29080‑M1/1‑94 (MQ=255)
                                              gTCACTACACGCACATACAACTGAGGGGGGCTGCGATTTTCAATTATGCGTGATGCAGATCACACAAAACTCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                          <  2:298734‑M1/143‑52 (MQ=255)
                                                cACTACACGCACATAAAACGGAGGTGTGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAAGGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                        <  1:48726‑M1/143‑54 (MQ=255)
                                                      acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                                  <  2:199133‑M1/143‑60 (MQ=255)
                                                            agacaACGGAGGGGGGCGGCGAGTTTCGATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                                                            <  1:55564‑M1/141‑66 (MQ=255)
                                                              aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                              <  2:523242‑M1/107‑32 (MQ=255)
                                                              aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                              >  1:523242‑M1/1‑76 (MQ=255)
                                                                   ggAGGGGTGCTGCGATTTTCAATAATGCGTTATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                     <  2:305463‑M1/143‑73 (MQ=255)
                                                                   ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcactacgctagcaggcaaaaa                                                                     >  2:55025‑M1/1‑71 (MQ=255)
                                                                     aGGGGGGCTGCGATTTTCAATAATGCGTGTTGCTGATTATACATAATACTTAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatg                                                                   <  1:562836‑M1/143‑75 (MQ=255)
                                                                        ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtctaagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaaacaaaaatgaaa                                                                >  2:145086‑M1/1‑66 (MQ=255)
                                                                        ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                                >  1:632451‑M1/1‑66 (MQ=255)
                                                                            cTGCGGTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgcaacagg                                                            >  1:552081‑M1/1‑62 (MQ=255)
                                                                             tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacaatagcaagcaaaaatgaaacagga                                                           >  1:656351‑M1/1‑61 (MQ=255)
                                                                              gCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaa                                                          >  1:715503‑M1/1‑60 (MQ=255)
                                                                                                               aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttctctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaat                         >  1:559273‑M1/1‑27 (MQ=255)
                                                                                                                 aaCACTTAATTACTTAACATAAATGtataagtcatacttttgtttttgttgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                       <  1:356651‑M1/143‑119 (MQ=255)
                                                                                                                     cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggaggttgcgcacaggccaaataactca                   >  1:424391‑M1/1‑21 (MQ=255)
                                                                                                                      tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctaagctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttacgcacaataaaaataacacac                  >  2:411346‑M1/1‑20 (MQ=255)
                                                                                                                             cTTAACATAATTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaat           <  2:102385‑M1/143‑131 (MQ=255)
                                                                                                                                  cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatca      >  1:664172‑M1/1‑8 (MQ=255)
                                                                                                                                      aacgtataagtcatacttttgttttgggtgtatctcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctg  <  2:145920‑M1/140‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                           
CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGC  >  NC_000913/1978365‑1978641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: