| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.1% | 113.1 / 58.3 | 94 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base C (34/31); new base T (16/12); total (51/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTT > NC_000913/4295920‑4296199 | cggCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGc < 1:1037235/142‑1 (MQ=17)aGGCGTTTCTGCCGGGTCCGAGATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGc < 2:1250134/143‑1 (MQ=255) ggCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc > 1:320959/1‑143 (MQ=17) gCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACCGCGCAGTAGCCTGGTTTAGCGTGATTTTGTAGGTCGGCTCAGGCGTTTACGCCGCATCCGACATCAATGCCt > 1:614174/1‑143 (MQ=11) gTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTGAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGa < 1:433654/143‑1 (MQ=17) tttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt < 2:1207000/143‑1 (MQ=17) aTGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCg > 1:1207000/1‑143 (MQ=32) tGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGa < 1:250347/143‑1 (MQ=17) tGCCGAATAAGACATCAACTCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGTCTAATTTAGAGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGa < 1:8274/143‑1 (MQ=11) ccGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAGTTAGCGTGATTTTGTAGGTCGGGTAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGGGACg > 2:975268/1‑143 (MQ=255) cGCATCCGTTATCACCGCTTGATGCGACGCTTCACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGc < 2:72013/143‑1 (MQ=11) gCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCt < 1:1009452/143‑1 (MQ=32) cATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCGGGATCCGTCGTCAATGCCTGATGCGACgtgt > 1:335410/1‑140 (MQ=11) ccGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGcc > 2:666181/1‑143 (MQ=21) cGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGCTTTTGTAGGTCGGATCAGGCGTTTACGCCGCATCCGACATCAATGCCTGACGCGACGCTTGCcg > 2:745053/1‑143 (MQ=255) gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGCCCTCCATGCCTGATGCGCCGCTTGCcgc > 1:149103/1‑143 (MQ=11) gACATCAACGCCTGATGCGACGCTTAACGAGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCGTGATTTAGCGTGATTTTGTAGGTCGGAAAAGGCGCTTACGCCACCTCCCACACCAATGCCTGAGCCGACCCTAGCcgc > 2:687662/1‑143 (MQ=11) aCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGGCGCTTGCcgcg > 1:351480/1‑143 (MQ=25) cATCAACGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCG‑t < 2:527238/143‑1 (MQ=25) acgaaggCCTGATGCGACGCTTGACGCGTCTTAGCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑Tc < 2:275968/137‑1 (MQ=255) aTCAACGCCCGATGTGACGCTTATCTCGTCTTATCAGGCCTACGCCCGCTAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCTGACAAGGCGTTTACGCCGCATCCGATATCAACGCCTGATGCGACGCTTGCCGCG‑Tc < 2:117076/143‑1 (MQ=11) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGCTAAGGCGTTTACGCCGCATCCGACCTCAACGCCTGATGCTACGCTTTCCGCG‑Tcct > 1:775208/1‑141 (MQ=255) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCtt < 1:379928/143‑1 (MQ=39) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCtt > 1:782429/1‑143 (MQ=38) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCCCAGCCAGCGCAAAAGCCTGCTATAGCGGGATTGTGGAGCGCCGAGAAGGCGTTTACGGCGCATCCGACAGCAAAGCTTGGTGGGCGGCGTGCCGCG‑tata > 2:356384/1‑140 (MQ=2) cAACGCCGCATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCtt < 1:353478/143‑1 (MQ=255) taggCCTGATAAGACGCGTTAAGCGTCGCATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGAGGCGTTTACGCCGCATCCGACCTCAACGCCTCATGCCACGCCTGCCGCC‑TCTTa > 2:747947/4‑143 (MQ=11) aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAGTGCCTGCTGCGACGCTTGCCGCG‑CCTTa > 2:489759/1‑143 (MQ=255) aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCG‑TCTTa > 2:304093/1‑143 (MQ=25) aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCCTGCCGCG‑TCTTa > 2:638126/1‑143 (MQ=25) cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATGTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCCACGCCTGATGCGACGCTTGACGCG‑GCTTATc > 1:455427/1‑143 (MQ=255) gCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGCTAAGGCGTTTACGCCGCATCCGACACCAACGCCTGCGGCGCGGCTTGCCGCG‑CGTTATCa > 2:822918/1‑143 (MQ=11) tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGAG‑TCATactaagc > 2:391287/1‑137 (MQ=11) tGCGACGCTTAACGCGTCTTATCAGGCCGACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTa < 1:481537/143‑1 (MQ=255) ggcGCTTAACGTGTCTTAGCAGGCCGACGCAAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGc < 1:357531/141‑1 (MQ=255) gACGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGc < 1:510849/143‑1 (MQ=38) gACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGCCCTCAATGCCTGCTGCGCCGCTTGCCGCG‑TCTTATCAGGCCtctct > 1:943809/1‑139 (MQ=11) gACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCACCGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGc < 1:983289/143‑1 (MQ=255) cGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGTGACGCTTGCCGCG‑TCTTATCAGGCCTatctta < 1:566785/143‑6 (MQ=2) tgccgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACa < 2:583609/140‑1 (MQ=25) tAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACa < 1:737617/143‑1 (MQ=39) gTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAGAACGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCaa > 1:1184856/1‑143 (MQ=255) ttATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCGTGCCGCG‑TCTCATCAGGCCTCCGCCAGACAGCGCGAtcg > 2:232862/1‑141 (MQ=255) aTCAGGCTTACTCCAGATAGCGCATTGACCTGACTTAGCGTGATTTTTTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGcc < 2:102881/143‑1 (MQ=11) aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGcc < 1:882787/143‑1 (MQ=37) tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCa < 1:439790/116‑1 (MQ=255) tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCa > 2:832008/1‑116 (MQ=40) tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCa > 2:439790/1‑116 (MQ=40) tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCa < 1:832008/116‑1 (MQ=255) tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAGTAGCCt > 1:696333/1‑143 (MQ=38) ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt > 2:35932/1‑99 (MQ=18) ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt < 1:35932/99‑1 (MQ=21) ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTa < 1:1111536/119‑1 (MQ=255) ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTa > 2:1111536/1‑119 (MQ=40) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAATGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCG‑t < 2:522695/105‑1 (MQ=255) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑t > 1:522695/1‑105 (MQ=40) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACCCTAGAGAGCGCAATAGcgtcgtc > 2:566785/1‑137 (MQ=11) ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATc > 2:453468/1‑104 (MQ=17) ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATc < 1:453468/104‑1 (MQ=255) cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTCCGCCAGACAGCGCAATAGCCTGCTTCAGCGTGa > 1:12776/1‑143 (MQ=255) aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGACGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAt > 2:894692/1‑143 (MQ=17) aaTAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgc < 2:1229647/85‑1 (MQ=255) ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGcc < 2:902144/78‑1 (MQ=255) ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGcc > 1:902144/1‑78 (MQ=40) cTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTCGCGTGATTCTGTAGGTCGGATa > 1:902185/1‑143 (MQ=255) tAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGt < 1:549140/143‑1 (MQ=38) cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGCCAGCGCATTAGCCTGCTTTCGCGTCATTCTGTAGGTCGGATAAGGCCTTTa > 2:119472/1‑143 (MQ=14) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGa < 2:830504/56‑1 (MQ=255) aTTTTGTAGGTCGGACAAGGCGTTTACGCCGCATCCGACTTCAACGCCTGATGCGACGCATG‑TGCGCTCAGCTTCTTCCTACACAAGACATCTTGATTTTCGGATCTAGCTTGATTTTGTAGGTCGGATAAGGCGTTTATGcc < 1:917997/143‑1 (MQ=2) tttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCACTTCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACCCCAGCCAGCGCTACAGCCTGCTATAGCCTCACTTCCGGCGTCGGATCACGCGTTTAcgccgc > 2:559350/1‑143 (MQ=2) gTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGAGGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCGTc > 1:531865/1‑143 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCATCGCCTGATGCGACACTCGGCGCG‑CCCCAAGAGGCACACGCAAGACCGCGCAATTGCCCGACTCGGCGTGATTCCGTAGGTCGGATAAGGCGTTTATGCCGCATCCGa < 2:180613/143‑1 (MQ=2) gTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGc < 2:265550/54‑1 (MQ=255) gTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGc > 1:265550/1‑54 (MQ=255) tctgccaaGGCGTCTGCGCCGCATCCTCCATCACCGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACa < 2:1251892/137‑1 (MQ=11) tCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACa > 1:592441/1‑143 (MQ=38) ggATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTCTGTTTACCGGATAAGGCGTTTACGCCGCGTCAGACATc > 2:256061/1‑143 (MQ=11) tAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt < 2:700466/37‑1 (MQ=17) tAAGGCGTTTACGCCGCATCCGACATCAACGCCTGAt > 1:700466/1‑37 (MQ=255) tAAGGCGTGGACGCCGCATCCGACATCACCGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAAc < 1:822918/143‑1 (MQ=255) aaGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTCATTCTGTAGGTCGGATAAGGCGTTTACGCCGCCTCCCACACCAACg > 2:194345/1‑143 (MQ=11) ggCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGGGTTTATGCCGCATACGAAATCCACGcc > 1:1032837/1‑143 (MQ=255) gggtgtACGCGGCGTCCGTCATCAGCGCCGGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCt < 2:872756/138‑1 (MQ=11) gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGAc < 2:782429/143‑1 (MQ=34) ccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGGGGACTAGCCTGTTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATTCGGCGTCGGCGCCTGAGGCGACg > 1:176825/1‑143 (MQ=11) cgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCTGCTTTAGCGTGATTTTGTCCGCAGGATTAAGCTGTTATGCCGCATCCGACATCAACGCCTGATGCGACGc > 2:550454/1‑143 (MQ=11) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGc > 2:1147579/1‑80 (MQ=40) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGc < 1:1147579/80‑1 (MQ=255) aTCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGc > 2:930978/1‑102 (MQ=38) tCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCACTAGCCTGCTTTAGCGTGATTTTGTAGGTCGGATCAGGCGTTTCTGCCGCATCCGACATCAACGCCTGATGCGACGCTTaa > 1:755082/1‑143 (MQ=255) aCATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAcgcg > 1:1017535/1‑143 (MQ=35) cATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGt < 1:490084/143‑1 (MQ=35) aTCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTc > 1:527238/1‑143 (MQ=34) caccGCCGGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCtt < 1:325855/140‑1 (MQ=11) aaCGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGt < 1:315469/94‑1 (MQ=33) | AGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCG‑TCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTT > NC_000913/4295920‑4296199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |