Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3796978	3797746	769	17 [16]	[16] 17	waaL	O‑antigen ligase

TAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAACGGCGGCACTGGATAGACCCAATATCACGGTTTATGGACCAACCGATCCGGGATTAATTGGTGGGTATGGGAAGAATCAGATGGTATGTAGGGCTCCAAGAGAAAATTTAATTAACCTCAACAGTCAAGCAGTTTTGGAAAAGTTATCATCATTATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGAAACCTTACACTCTGAAATCATCAATGATTTTAGAGATAAT  >  NC_000913/3796740‑3797018                                                                                                                                                                                                                                              |                                          tAAATTTGTTTGGTCGGTGGATACGGGGTTAAGCCATTTAACGGCCGCAATGGATAGACCCAATATCACGGTGTATGGACCAACCGATCCGGGATTAATTGGTGGGTATGGGAAGAATCAGATGGTATGTAGGGCTCCAAGAGAAAATTTAATTAACCTCAACAGTCAAGCAGTTTTGGAAAAGTTATCATCATTATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTg                                           <  2:833468/238‑1 (MQ=255)  aaaTTTGGAGTGTCGGTGGATACGGGGTTAAGCCATTTAACGGCGGCACTGGATAGACCCAATATCACGGTTTATGGACCAAACGATACGGGATTAATTGGTGGGTATGGGAAGAATCAGATGGTATGTAGGGCTCCAAGAGAAAATTTAATTAACCTCAACAGTCAAGCAGTTTTGGAAAAGTTATCATCATTATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGaa                                         <  1:891051/239‑1 (MQ=255)         tAGTGTCGGTGGATACGGGGTTAAGCCATTTAACGGCGGCACTGGATAGACCCAATATCACGGTTTATGGGCCAACCGATCCCGGGTTAATTGGGGGGGATGGGTAGAATCAGATGGGATTTAGGGGTCCAAGAGAAAATTTAAATAACCCCAACAGACAAGCAGTTTTGGAAAAGTTATAATCATTATAAAAGTAAAACATGGTAAAATCCTTTAAAATTATTTTATTTAAAACTTaa                                  >  2:337272/1‑238 (MQ=255)          tgtttgggtggtTTCGGGTTTTAGGCATTTAACGGTGGGTGTGGATAGACCCAATATCACGGTTTATGGACCAACCGATCCGGGATTAATTTGTGGGTATGGGAAGAATCAGATGGTATGTAGGGCTCCAAGAGAAAATTTAATTAACCTCAACAGTCAAGCAGTTTTGGAAAAGTTATCATCATTATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGAAACCTTaca                                 <  2:301817/233‑1 (MQ=255)                        cGGGGTTAAGCCATTTAACGGCGGCATGGGATAGACCCAATGTCACGGTTTATGGACCAACCGATCCGGGATTAATTGGGCGGTATGGGAAGAATCAGATGGTATGTAGGGCTCCAAGAGAAAATTTAATTAACCTCAACAGTCAAGCAGTTTTGGAAAAGTTATCATCATTATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGAAACCTTACACTCTGAAAtcatca                   <  1:66376/239‑1 (MQ=255)                                 gCCATTTAACGGCGGCCTTTGATAGTCCCAATATCACGGTTTATGGGCCAACCGGTCCGGCATTAATTTGTGGGTTAGGGAAGAATCAGATGGTATGTAAGGCTCCAAGAGAAAATTTAATTAACCTCAACAGTCAAGCAGTTTTGGAAAAGTTATCATCATTATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGAAACCTTACACTCTGAAATCATCAATGATTTTa          <  2:602121/239‑1 (MQ=255)                                         aCGGGGGCACGGGATAGCCCCAATTTCCCGGTTTATGGACCAACCGGTCCGGGATTAATTGGTGGGTATGGGAAGAATCAGATGGTATGGAGGGCTCCAAGAGAAAATTTAATTAACCTCAACAGTCAAGCAGTTTTGGAAAAGTTATCATCATTATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGAAACCTTACACTCTGAAATCATCAATGATTTTAGAGataat  <  2:803022/239‑1 (MQ=255)                                                                                   aCCGATCCGGGATTAATTGGTGGGTATGGGAAGAATCAGATGGTATGTAGGGCTCCAAGAGAAAATTTAATTAACCTCAACAGTCAAGCAGTTTTGGAAAAGTTATCATCATTATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGAAACCtt                                    >  1:389180/1‑163 (MQ=255)                                                                                   aCCGATCCGGGATTAATTGGTGGGTATGGGAAGAATCAGATGGTATGTAGGGCTCCAAGAGAAAATTTAATTAACCTCAACAGTCAAGCAGTTTTGGAAAAGTTATCATCATTATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGAAACCtt                                    <  2:389180/163‑1 (MQ=255)                                                                                                                     aTCAGATGGTATGTAGGGCTCCAAGAGAAAATTTAATTAACCTCAACAGTCAAGCAGTTTTGGAAAAGTTATCATCATTATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGAAACCTTACACTCTGaa                          >  1:672943/1‑139 (MQ=255)                                                                                                                     aTCAGATGGTATGTAGGGCTCCAAGAGAAAATTTAATTAACCTCAACAGTCAAGCAGTTTTGGAAAAGTTATCATCATTATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGAAACCTTACACTCTGaa                          <  2:672943/139‑1 (MQ=255)                                                                                                                                       cTCCAAGAGAAAATTTAATTAACCTCAACAGTCAAGCAGTTTTGGAAAAGTTATCATCATTATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGAAACCTTACAct                               <  1:360545/116‑1 (MQ=255)                                                                                                                                       cTCCAAGAGAAAATTTAATTAACCTCAACAGTCAAGCAGTTTTGGAAAAGTTATCATCATTATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGAAACCTTAAAct                               >  2:360545/1‑116 (MQ=255)                                                                                                                                                                                     aaaGTTATCATCATTATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGAAACCTTACACTCTGAAATCATCAATGATTTTAGAGataat  >  1:345522/1‑99 (MQ=255)                                                                                                                                                                                     aaaGTTATCATCATTATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGAAACCTTACACTCTGAAATCATCAATGATTTTAGAGataat  <  2:345522/99‑1 (MQ=255)                                                                                                                                                                                                  ttATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGAAACCTTACACTCTGAAATCATCAATGATTTTAGAGataat  <  2:313701/86‑1 (MQ=255)                                                                                                                                                                                                  ttATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGAAACCTTACACTCTGAAATCATCAATGATTTTAGAGataat  >  1:313701/1‑86 (MQ=255)                                                                                                                                                                                                                                              |                                          TAAATTTGTAGTGTCGGTGGATACGGGGTTAAGCCATTTAACGGCGGCACTGGATAGACCCAATATCACGGTTTATGGACCAACCGATCCGGGATTAATTGGTGGGTATGGGAAGAATCAGATGGTATGTAGGGCTCCAAGAGAAAATTTAATTAACCTCAACAGTCAAGCAGTTTTGGAAAAGTTATCATCATTATAAAGGTAAAACATGCTAACATCCTTTAAACTTCATTCATTGAAACCTTACACTCTGAAATCATCAATGATTTTAGAGATAAT  >  NC_000913/3796740‑3797018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑