Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC JC	NC_000913	1,293,032	IS1 (–) +8 bp	100%	intergenic (‑110/‑488)	hns ← / → tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	257908 =	NA (NA)	49 (0.980)	34/414	NT	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 1293039	0 (0.000)					intergenic (‑117/‑488)	hns/tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
*	?	NC_000913	1293032 =	0 (0.000)	59 (1.180)	41/414	NT	100%	intergenic (‑110/‑495)	hns/tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
	?	NC_000913	= 1979270	NA (NA)					noncoding (1/768 nt)	IS1	repeat region

ACTGTTCTACTTTTCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1293249‑1293032 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGC‑TTCTCAACCCGGTACGCACCAGAAAAT  <  NC_000913/1979270‑1979049                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACTGTTCTACTTTTCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGAT                                                                                                                                                                                                                           >  1:266871/1‑224     TTCTACTTTTCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGATGACTGACATGTCGTCAGCCTACGACAATCTCCCTATAAAATGTGACATGAATCAGGAAGTTTTAAACTCACGTGCTGCGAAATCATAGGTGTAAATAGGGCTATATGCCGCGACTTTTCTGGCTAA‑TTTTATGCAATGATATTTATTGGCGGCACAACGGGATTCTGCCAA                                                                                                                                                                                                                   >  1:605102/1‑228     TTCTACTTTTCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGTCGGCACAAGGTGATGCTGCCAA                                                                                                                                                                                                                   >  1:331512/1‑228         ACTTTTCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTA                                                                                                                                                                                                               <  1:25772/228‑1          CTTTTCATCATTCGCTTAATAGAGAATTCTCGTAAACACAACTAATACAGAAGACTTAGAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTAC                                                                                                                                                                                                              <  1:90158/228‑1               CATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAAACTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATT                                                                                                                                                                                                         <  1:74563/228‑1               CATCATTCGCTTAATAGGGAATGCGCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGTCTACGATAATCGCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATT                                                                                                                                                                                                         <  1:286604/228‑1                    TTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCCACTTACTGATTTATTG                                                                                                                                                                                                    >  1:192708/1‑228                            ATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG                                                                                                                                                                                            <  1:400281/228‑1                            ATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGGGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG                                                                                                                                                                                            <  1:232505/228‑1                                     TCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGCGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA                                                                                                                                                                                   >  1:72162/1‑228                                                     AATACAGAAGTCTTAAAGGTCGTCAGCCTTCGATAATCACCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTTGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTT                                                                                                                                                                   <  1:227650/228‑1                                                     AATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTT                                                                                                                                                                   <  2:266871/228‑1                                                      ATACAGAAGACTGAAAGGTCCTCAGCCTACGATAATCCCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTTCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTT                                                                                                                                                                   <  1:579738/227‑1                                                        ACAGAAGCCTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCGCGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTG                                                                                                                                                                <  1:194890/228‑1                                                           GAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGTCGGCACAAGGTGATGCTGCCAACTTACTGATTTATCGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCattt                                                                                                                                                              >  1:258755/1‑223                                                           GAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGGGCTCCAGTGGCTTCTGTT                                                                                                                                                              >  1:138401/1‑227                                                           GAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGATGCCAAATTCCTGATTTATGTTATGATGGGGTTTTTGAGTGGTTCCAAGGGCTTCTGTT                                                                                                                                                              >  1:307403/1‑227                                                                 TGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCCCAAGGGGATGCTGCCACCTTACTGATTTAGGTAATGTTGGGGTTTTTGGGGGGCTCCAGGGGCTTTCGTTTTTAT                                                                                                                                                         >  2:33141/1‑226                                                                 TGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGGGTTTTTTAGGTGCTCCAGTGGCTTCTGTTTCTAT                                                                                                                                                         >  1:393009/1‑226                                                                                  ACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCCAATTAATGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTTTGTTTCTATACGCTGTCCCTCCTTTTCA                                                                                                                                      >  2:452847/1‑228                                                                                       AATCTCACCATAAAATGTGACAGGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTAC                                                                                                                                 <  1:238127/228‑1                                                                                            CCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACG                                                                                                                            <  2:114670/228‑1                                                                                                    AATGTGACATGAATCAGGCAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTACATAGGGCTATATTCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTTGTTTATGATGGTGTTTTTGAGGTGCTCCCGTGGCTTCTGTTTCTATCAGCTGTCCCTCCCGTTCCTCAACTGACGGGCTGGTt                                                                                                                    >  1:518659/1‑227                                                                                                     ATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACACGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGAGGCTCCAGTGGCTTCTGTTTCTATCAGCTGTGCCTCCTGTTCAGCTACTGACGGGtgggttc                                                                                                                   >  1:658189/1‑221                                                                                                        ttcttTGAATCAGTTAGTTTTAATACCACGTGGTTGGAAATCATTGGTTTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGGGTATGATGGTGTTTCTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTA                                                                                                                <  2:265250/223‑1                                                                                                           CATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTTTATGATGGTGTTTTTTAGGGGCTCCAGTGGCTTCTGTTTCTATCCGCTGTCACTCCCGTTCAGTTACAGCCGGGGCGGGGGGTAAC                                                                                                              >  2:58016/1‑227                                                                                                                     GAATTTTTAACCTCAGGTGGTGGGAAATCATTGGTTTAAATAGGGGTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCCCAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCAC                                                                                                   <  2:72162/228‑1                                                                                                                      AAGTTTTAACCTCACGTGCTGCGAAATCATCGTGGTAAATAGGGTTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCAC                                                                                                   <  2:550160/227‑1                                                                                                                         TTTTAACCTACCGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCC                                                                                               <  1:452847/228‑1                                                                                                                                 TCACGTGGTGCAAAATTATCGGTGTAAATAGGGTTATATGCCGGGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATC                                                                                        <  2:138401/227‑1                                                                                                                                        CTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGGAACGGCCAAAGCACCCCCGGACATCACCCCTA                                                                                 >  1:159370/1‑227                                                                                                                                         tggGAAATCTTCGGTGTAAAGAGGGCTATATGCCGGTTTTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATC                                                                               <  2:393009/225‑1                                                                                                                                          ggtAAATCATCGGTTTAAATTGGGCTATATGCCGCCGCTTGTCTGGTTAA‑TTTTATGAAAAGATTTTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCT                                                                              <  1:314778/225‑1                                                                                                                                          ggtAAATCATCGGTGTAAATAGGGCTATATGCCGCTTCTTTGCTGGTTAA‑TTTTATGAAAAGATATTTATTGGCGGCCCAAGGTGATGCTGCCAACTTACTGATTGAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCT                                                                              <  1:397153/225‑1                                                                                                                                           CGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCATCTACTGAGGGGGTGGTGCGTACAGGCCAAAGCACCGCCGGACATCCGCGCTTTCT                                                                              >  1:236186/1‑227                                                                                                                                                    tggttgAAATAGGTCTATATGCCGGTTTTTTTCTGGATAA‑TTTTATGAAAAGATATGTAGTGGCGGCACAAGGTGATGCTGCAAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGTTTCTGTTTCTATCAGCTGCCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCAC                                                                    <  2:307403/222‑1                                                                                                                                                         TAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGGGGGGCGTAACGGCAAAAGCCCCGCCGGCCATCACCGCTGTCTCTGTTTTCACTGCCG                                                               >  1:357898/1‑228                                                                                                                                                                 gtTATTTGCCGGGTTTTTTCTGGGTAA‑TTTTATGAAAAGATTTTTATTGGCGGCACAAGGTGATGCTGCCAATTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACAT                                                       <  2:192708/226‑1                                                                                                                                                                 GCTATATGCCGCGTCTTTTCTGGCTAATTTTTATGAAAAGATATTTATTGGCGGCACAAGGGGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCCCCTGTTCAGCCACTGACGGGGTGTGGCGTAACGGCAAAAGCCCCCCCGGACCTCACCGCTATCTCTCCTCCCCCTGCCCGAAAAaa                                                        >  2:420412/1‑226                                                                                                                                                                 GCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTTTACGATGTCCCTCCTGTTCAGCTACTGACGGGGGGGTGCGTAACGGCACAAGCACCTCCGGACATCAGACCCATCCTTGCTCTCCCTTCCGTACAACct                                                       >  1:509216/1‑226                                                                                                                                                                 GCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACATTCTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGTCTTCTGTTTCTATCAACTTTCCCTCCTTTTCAGCTCCTGACGGGGGGGGGCGTAACGGCCAAAGCACCCCCGGCCATCAGGGCCATCTCTGCCCTCACCGCCGTAAAAaca                                                       >  2:458124/1‑225                                                                                                                                                                  caATATGCCGCGGCTTTTCTGGGTAA‑TTTGATGAAATGATATTAATGGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCGGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGAACCGGCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACAT                                                       <  1:58016/225‑1                                                                                                                                                                          CGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCCCCCCCCGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGC                                              >  1:302039/1‑228                                                                                                                                                                            CGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCc                                             >  1:335053/1‑226                                                                                                                                                                             gttgTTTCTGTGTAA‑TTTTATGAAAAGATATTGATTGGCGGACCTAGGTGAGGCTGGCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTGCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAG                                            <  1:33141/223‑1                                                                                                                                                                             cttTTTTCGGGCTTA‑TTTTAAGAAAAGATGTTTATTGGCGGCACAAGGGTATGCTGCCAACTTACTGATTTAGTGTAGTATGGTGTTTTGGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCGGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAG                                            <  1:395773/224‑1                                                                                                                                                                                       GCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCCGTGGCTTCTGTTTCTATCAGCTGTCCCTCCCGTTCAGCTACTGACGGGGTGGTGCGTAACGGCCAAAGCACCCCCGGACATCAGCGCAATCTCTGGTCTCACTGCCGTAAAACAAGGCAACTAACGATCACTTACA                                  >  2:103564/1‑227                                                                                                                                                                                       GCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAAGGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTTGTGCGTAACGGCAAAACCACCGCCGGGCATCAACGCTTTCTCTGCCCTCACTGCCGTAAAAAAGTGGAACTGCAGTTacattaaa                                  >  2:423161/1‑219                                                                                                                                                                                                    AAAAGTTTTTTATTGGTGGGACATGGGGATGCTGCCATCTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCATTGGCTTCTGTTTCTATCAGCTGTCCCCCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGC‑TTCTCAACC                    <  2:313914/228‑1                                                                                                                                                                                                     AAAGTTTTTTTTTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGGATGTTGGTGTTTTGGGGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGCCCCTCCTGTTCAGCTCCTGACGGGGTGGGGCGTAACGGCAAAAGCCCCGCCGGACATCAGCGCTATCTCTGCTCTCCCTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGC‑TTCTCAACC                    <  2:360944/227‑1                                                                                                                                                                                                       AGATATTTATTGGCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGAAATCAACGCTAACTCTGTCCTCACTGCCGTAAAACATGGCAAATGCCGTTCACTTAAACCCCTTTCTAAACCCG                  >  2:433479/1‑228                                                                                                                                                                                                                   attgggttAGGTGATGCTGCGAAGTGTATGATTTAGTGTAGGTTGGGTTTTTTGAGGTGCTCCAGTGGCTTATGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGCCGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGC‑TTCTCAACCCGGTACGCACCAGAA     <  1:444743/220‑1                                                                                                                                                                                                                   GCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGC‑TTCTCAACCCGGTACGCACCAGAA     >  1:532011/1‑228                                                                                                                                                                                                                   GCGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCG                                                               >  1:390683/1‑171                                                                                                                                                                                                                    CGGCACAAGGTGATGCTGCCATCTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGT                                                              <  2:390683/171‑1                                                                                                                                                                                                                    CGGCACAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGAAATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACAAGGCAACTGCAGTTAACTTACACCGC‑TTCTCACACCGGTAAGCCCCACAAA    >  2:16405/1‑228                                                                                                                                                                                                                     GGCCCAAGGTTAGGCTGCCAATTTTCTGTTTTAGTGTATGATGGTGTTTTTGATGTGCTCCAGGGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGC‑TTCTCAACCCGGTACGCACCAGAA     <  2:357898/226‑1                                                                                                                                                                                                                      GCACAAGGTGATGCTGCCAACTTACTTATTTAGGGTATGATTGTGTTTTTGAGTTGCTCCGGTGGCTTCTGTTTCTATCAGCTTGCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAGCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGC‑TTCTCAACCCGGTACGCACCAGAAAAT  <  1:311260/228‑1                                                                                                                                                                                                                      GCACAAGGCGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCATAAGCACCGCCGGGCATAAGCGCGATCTCTGCTCTCACTGCCGTAAAACAAGGCAACAGCCGTTCACTTACACCGC‑TCCTCAACCCTGTAAGACACAGAAAAT  >  1:315055/1‑228                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACTGTTCTACTTTTCATCATTCGCTTAATAGGGAATTCTCGTAAACACAACTAATACAGAAGACTGAAAGGTCGTCAGCCTACGATAATCTCCCCATAAAATGTGACATGAATCAGGAAGTTTTAACCTCACGTGCTGCGAAATCATCGGTGTAAATAGGGCTATATGCCGCGTCTTTTCTGGCTAA‑TTTTATGAAAAGATATTTATTGGCGGCACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1293249‑1293032 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCTCTGCTCTCACTGCCGTAAAACATGGCAACTGCAGTTCACTTACACCGC‑TTCTCAACCCGGTACGCACCAGAAAAT  <  NC_000913/1979270‑1979049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.