Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC JC	NC_000913	1,979,486	IS5 (+) +4 bp	100%	intergenic (‑271/‑264)	insA ← / → uspC	IS1 repressor TnpA/universal stress protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979486 =	0 (0.000)	32 (0.640)	30/414	NT	100%	intergenic (‑271/‑267)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	2101749 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region
*	?	NC_000913	= 1979489	0 (0.000)	36 (0.720)	30/414	NT	100%	intergenic (‑274/‑264)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	= 2290113	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

GGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGC  >  NC_000913/1979259‑1979713                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                    aaccaactggcgatgttattcacgctggccaaccggtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaaggatgtccccgcttattcgcaccttccc                                                                                                                                                                                                                                     >  1:422492‑M1/228‑228 (MQ=255) aaccaactggaggtgttattcacgctggccaacctgtttccggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                                                                                                     >  1:294007‑M1/228‑228 (MQ=255)  accaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaatagtctgattcaaggcatttacgggagaaaaaatcggctgaaacatgaagaaatgaaatgattgagtcagccgagaagaatttccccgcttattcgcaccttacCt                                                                                                                                                                                                                                    <  1:323875‑M1/2‑1 (MQ=255)  accaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                                                                                                     <  1:457250‑M1/1‑1 (MQ=255)  accaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatcgcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                                                                                                     >  1:262453‑M1/227‑227 (MQ=255)     aactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactacaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttacCTaa                                                                                                                                                                                                                                  <  1:534854‑M1/4‑1 (MQ=255)     aactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatcgcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                                                                                                                 >  1:149900‑M1/224‑228 (MQ=255)             cATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAACCAGACACTTACCGCACAACAAACTAAggaaggt                                                                                                                                                                                                                           >  1:611042‑M1/1‑219 (MQ=255)                aaaTGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaa                                                                                                                                                                                                                      <  1:46879‑M1/228‑13 (MQ=255)                aaaTGTATAAGGCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaa                                                                                                                                                                                                                      <  2:611042‑M1/228‑13 (MQ=255)                      ttatttattttttttg‑tttgggtttatttgaaTCTGGTAAAAATGTTTTCGATACGCGAGCAAGCAAAAATGAAACATGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgatcaagtcc                                                                                                                                                                                                               <  2:195296‑M1/217‑20 (MQ=255)                      acgctggccaacttgtttcgggcggaacaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAgg                                                                                                                                                                                                                 >  1:349120‑M1/207‑227 (MQ=255)                        gctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                                                                                                                     <  1:185728‑M1/1‑1 (MQ=255)                        aaGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccc                                                                                                                                                                                                              <  1:153564‑M1/228‑21 (MQ=255)                         ctggccaaccgttttcgggcggaccaaatgatacgtcagggggagaaatcgcactaaaaactgggaataacgccttaaatggcgaagaaacggtctaaataggctgattaaaggcatgtacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaa                                                                                                                                                                                                              >  2:176172‑M1/204‑227 (MQ=255)                         cgggccaacctgtttagggaggaccaaatgatacgtcagtgggaaaaatcttatcaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt                                                                                                                                                                                                                                    >  2:185728‑M1/204‑205 (MQ=255)                            gccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                                                                                                          >  1:89033‑M1/201‑228 (MQ=255)                             ccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgcgaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                                                                                                  <  1:75619‑M1/4‑1 (MQ=255)                             ccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaag                                                                                                                                                                                                                  <  1:195570‑M1/20‑1 (MQ=255)                              caacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAgg                                                                                                                                                                                                                 >  2:195570‑M1/199‑219 (MQ=255)                               aCTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggagcgaacaagtccctgttatg                                                                                                                                                                                                       >  1:306455‑M1/1‑201 (MQ=255)                                 cctgtatccggcggaccaaaatattcgtaagggggagaaatcctactaaaaacttgggataacggcttaaaaggagaagaaacggtctaaaaaggctgattctaggcatttacgggagaaaaaatcggcttaaacatgaagaaattaaatgtctgagccagccgagaagaaattccccgcttaatcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACt                                                                                                                                                                                                     >  1:625651‑M1/196‑228 (MQ=255)                                  ctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaacaa                                                                                                                                                                                                           <  1:305015‑M1/27‑1 (MQ=255)                                  ctgtttcgggcggaccaaatgatacgtcagtgggagagatctcaataaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaacaa                                                                                                                                                                                                           >  2:305015‑M1/195‑221 (MQ=255)                                          ggccgaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacggcttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggaggaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgtta                                                                                                                                                                                             >  1:469205‑M1/187‑227 (MQ=255)                                            gtttttttcaatcTTTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgt                                                                                                                                                                                          <  2:306455‑M1/223‑41 (MQ=255)                                               accaaatgatgcgtcagtgggagagatctcaataaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaaacggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaaa                                                                                                                                                                                       >  2:40912‑M1/182‑228 (MQ=255)                                               accaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcacacatgaagaaatgaaatgactgagtcagccgggaagaatttccccgcttattcgcacctcccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTAAATaaaa                                                                                                                                                                                       <  2:328062‑M1/47‑1 (MQ=255)                                                    ataagagaaaggtgggagatatctcactaaaaactggtgaaaacgccttaaatggcgaagaaacgggctaaataggctgattcaagggatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgacttagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGt                                                                                                                                                                                    >  2:282576‑M1/177‑226 (MQ=255)                                                        ttgTTAAAAATTTTTTCGCTACGCTAGAAAGGAAAAATGAAACAGGAATAATCTAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca                                                                                                                                                                              <  2:582292‑M1/227‑53 (MQ=255)                                                        tacggcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaattgccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAc                                                                                                                                                                               >  1:328062‑M1/173‑227 (MQ=255)                                                         tGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtaatctggagccaa                                                                                                                                                                             >  2:494888‑M1/1‑175 (MQ=255)                                                          cgtgaatgggagagatctaactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctaattcaaggcatgtacgggagaaaaaatcggctcaaacatgaagaaatgaaatgacttagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACat                                                                                                                                                                             >  2:138476‑M1/171‑227 (MQ=255)                                                           ttAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgccatctggagccaaa                                                                                                                                                                            >  1:582292‑M1/1‑173 (MQ=255)                                                               gtgggagagatctcactaaaaacgtgggataatgccttaaatggcgaagaaacggtctaaataggctgagtcaaggcatgtacgggagaaaaaatcggctcaaacatgaagaaaggaaatgactgagtcagccgagaagaatttccccgcttattcacaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTa                                                                                                                                                                       >  2:385459‑M1/166‑228 (MQ=255)                                                                   gagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAc                                                                                                                                                                     >  1:442815‑M1/162‑226 (MQ=255)                                                                          ctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcacctgccCTAATTAAATACAAAGATAGGCAACAATCAACTTCATGTTAATGAAATg                                                                                                                                                                                     <  1:282576‑M1/49‑1 (MQ=255)                                                                                  aaactggggataacgccttaaatggcgaagaaacggtctaaataggctgatccaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                                                                                                             <  1:136858‑M1/9‑1 (MQ=255)                                                                                   aactggggataacgccttaaatggcgaagaaacggtctaaataggctgatccaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAAt                                                                                                                                                                                                                            >  2:136858‑M1/146‑155 (MQ=255)                                                                                    actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcctttaagggagaaaaaaccggcttaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGgag                                                                                                                                                   >  1:61332‑M1/145‑227 (MQ=255)                                                                                       ggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaag                                                                                                                                                                                                                  <  1:401974‑M1/20‑1 (MQ=255)                                                                                        gggataacgccttaaatggcgaagaaacggtcgaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAgg                                                                                                                                                                                                                 >  2:401974‑M1/141‑161 (MQ=255)                                                                                             aacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAgg                                                                                                                                                                                                                 <  1:254448‑M1/21‑1 (MQ=255)                                                                                              acgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGc                                                                                                                                                                                                                >  2:254448‑M1/135‑156 (MQ=255)                                                                                                               aaTGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagc                                                                                                                       >  1:617079‑M1/1‑121 (MQ=255)                                                                                                                         tGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgccatctggagccatagaacagggttcatcatgagccatcaacttaccttcgccgacagtgaattccgcagtaagcgcc                                                                                                             >  1:151607‑M1/1‑111 (MQ=255)                                                                                                                              ggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGa                                                                                                                                                                                         <  2:567289‑M1/45‑1 (MQ=255)                                                                                                                              ggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATg                                                                                                        >  1:380215‑M1/103‑228 (MQ=255)                                                                                                                               gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaa                                                                                                                                                                                        >  1:567289‑M1/102‑147 (MQ=255)                                                                                                                                 gTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacaaggaattaagcagtaagccccgcacaacc                                                                                                     >  2:99203‑M1/1‑103 (MQ=255)                                                                                                                                       aaggaatttacgggaaaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaattgccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCggg                                                                                               >  1:644380‑M1/94‑228 (MQ=255)                                                                                                                                           cTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAACCAGACACTTACCGCACAACAAACTACggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagcg                                                                                            >  1:484995‑M1/1‑93 (MQ=255)                                                                                                                                            tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaacgaga                                                                                           >  1:631794‑M1/1‑92 (MQ=255)                                                                                                                                              aCCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgccagtgaattcagcagtaagcgccgtcaaaccagaaaagagattt                                                                                        >  2:189075‑M1/1‑90 (MQ=255)                                                                                                                                                          catcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgac                                                                                                                                   >  2:88490‑M1/1‑78 (MQ=255)                                                                                                                                                           atcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca                                                                                                                                  <  1:88490‑M1/173‑97 (MQ=255)                                                                                                                                                           acaggctatAAATAATCCCTTTAATGCAATACCAGATAAGATATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtacctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcat                                                                           <  2:225645‑M1/224‑152 (MQ=255)                                                                                                                                                              ggcTAAAAATAACCACTTTCAGGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtccgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatccagcattagcgccgtcagaccagaaaagagattttcttgtcccgcatggag                                                                        <  1:494888‑M1/227‑155 (MQ=255)                                                                                                                                                                          tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgca                                                                            >  1:225645‑M1/1‑62 (MQ=255)                                                                                                                                                                                tCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggca                                                      <  1:262768‑M1/228‑173 (MQ=255)                                                                                                                                                                                        tACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgggtaatcaacttcccttcgccgccagtgaattcaccagtaagcgccgtaagacacgaacagcgattttcttgtcccgcatggagccgattctgccaagccaaaacatgg                                              >  2:226674‑M1/1‑48 (MQ=255)                                                                                                                                                                                        tACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggc                                                       >  2:379977‑M1/1‑48 (MQ=255)                                                                                                                                                                                         aCCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggca                                                      <  1:379977‑M1/219‑173 (MQ=255)                                                                                                                                                                                            agtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATAAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTATCTTTACTAATaatcgga                                                             <  1:91491‑M1/169‑4 (MQ=255)                                                                                                                                                                                             gtcagacgagaaaaatttccccgcttattcgcaccttccCTAATTAAATTACAAGAAAGGCAACAATCAACGTAATGTTAATGAAATGTTTTACATATATTAACCCCTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTATCTTTACTAATAATCAGAc                                                            >  2:91491‑M1/40‑209 (MQ=255)                                                                                                                                                                                              aTAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaag                                        >  1:496705‑M1/1‑42 (MQ=255)                                                                                                                                                                                                  gCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacccgcaaagagattttcttgtcccgcatggagccgattctgccatggcaaaacatggtggaagtcat                                    >  2:31867‑M1/1‑38 (MQ=255)                                                                                                                                                                                                  gCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacccgaaaagagattttcttgtcccgcatggggaagattctgccatggccaaacatggtggtagtcat                                    >  1:576263‑M1/1‑38 (MQ=255)                                                                                                                                                                                                  gCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcat                                    >  1:112803‑M1/1‑38 (MQ=255)                                                                                                                                                                                                     aTTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagcaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatgtcgaaagtctcct                                  >  1:270566‑M1/1‑35 (MQ=255)                                                                                                                                                                                                                 gcacatACCGCACAACAAACCAAggaaggtgcgaacaagtccctgatttgagctcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccc                     <  1:112855‑M1/227‑206 (MQ=255)                                                                                                                                                                                                                 acacTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                                                                                                    >  1:624657‑M1/1‑23 (MQ=255)                                                                                                                                                                                                                  cacTTACCGCACAACAAACTAAggaaggtgcgaacaagtcccttatatgagatcaggtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttacccc                    <  1:99203‑M1/228‑207 (MQ=255)                                                                                                                                                                                                                  cacTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt                                                                                                                                                                   <  2:624657‑M1/85‑64 (MQ=255)                                                                                                                                                                                                                  cacTTACCGCACAAAAAACTAAggaaggttccaacaagtcccggaaattagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatgcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttacccc                    <  2:112803‑M1/228‑207 (MQ=255)                                                                                                                                                                                                                           cacaACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcaagccgttttaccccaaggcgggt           >  1:44001‑M1/1‑13 (MQ=255)                                                                                                                                                                                                                            caccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTa                                                                                                                                           <  2:77649‑M1/91‑1 (MQ=255)                                                                                                                                                                                                                             accttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTac                                                                                                                                          >  1:77649‑M1/8‑99 (MQ=255)                                                                                                                                                                                                                                    cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaatagattttctcgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccgg  <  1:67788‑M1/228‑225 (MQ=255)                                                                                                                                                                                                                                    cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccgg  <  1:362869‑M1/228‑225 (MQ=255)                                                                                                                                                                                                                                    cTAAggaaggtgcaaaaaattccctgatattaagtcatttttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccgg  <  2:320171‑M1/228‑225 (MQ=255)                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                    GGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTATCTTTACTAATAATCAGACTAATATTTACCTGTTTGACCGAGTTGGGATTGCGTCGTTTCTCCATTAGGAGTAAAGC  >  NC_000913/1979259‑1979713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.