| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,489,862 | A→G | 21.7% | S107P (TCC→CCC) | argD ← | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,489,862 | 0 | A | G | 21.7% | 129.4 / 3.6 | 61 | S107P (TCC→CCC) | argD | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| Reads supporting (aligned to +/- strand): ref base A (13/32); new base G (13/2); total (27/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.51e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCC‑TTGCCTTGCTGATCCCAGATTCGGCTGCCCT > NC_000913/3489625‑3490086 | gATCATCCATCACCGCTTTCCATGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAg < 1:515716/239‑1 (MQ=255) atccatcACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCCTTTGCTT‑TC‑CGGCCGGAGtcat > 1:278595/1‑236 (MQ=255) ccatcACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGGTTTGTTAGCTT‑CC‑GTGCCGGAGTT‑CCTa > 1:498884/1‑239 (MQ=255) ccatcACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGGTTCGTTAGCTT‑CC‑GTGCCGGGGGT‑CATa > 1:45986/1‑239 (MQ=255) catcACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGTCCACCCACCGAACCGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCATGCCAGTTTAAAGGCGGTTTCGTTAGGTT‑CC‑CGGCCGGaaggtagaa > 2:622752/1‑231 (MQ=255) catcACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGATT‑CC‑CGGCCGGAGTG‑CCTaa > 1:360073/1‑239 (MQ=255) tcccccccTTTCCCTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATaaa < 2:328033/232‑1 (MQ=255) aCCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTTGTTTTGAACGGGCTATGACGACCACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTGCGTAGATT‑CC‑ATCCCCGGGTTCCATAAac > 1:916056/1‑238 (MQ=255) cTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GGGCCGGGGTT‑CTTAAAca‑c‑cac > 1:132972/1‑238 (MQ=255) gCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGACCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCAACCAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAACTT‑CCGGTGCCGGGGTC‑AATAAACC‑C‑CCcggttacgg > 1:880530/1‑232 (MQ=255) cATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTCAGTTT‑CC‑GTGCCCGAGTT‑CATAAa‑a‑c‑cacaccgttctgac > 1:118516/1‑228 (MQ=255) agaTCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTTGTTAGCTT‑TC‑CTGCCGGGGTT‑CATAAACA‑C‑CCCCCGTTCGGCAAAcct > 1:638912/1‑237 (MQ=255) gaTTGTTAAAGGTGACGTGGATGATGTGTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTGGGCTGCCCACCCCACGAAACGGTAAACCAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTGTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACg < 1:251518/238‑1 (MQ=255) gTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTTGGTAACTT‑CC‑GTGCCGGGGTT‑CCTAAAAA‑C‑CCACCGTTCGGCAAACGTTgtc > 1:283433/1‑236 (MQ=255) gTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTTGCTTCCC‑GTCCCGG‑GTT‑CCTAAAAA‑A‑CACCCGTTCGGCAAACGGTGcc > 1:785043/1‑238 (MQ=255) aaGGGAACGGGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑At < 1:622752/239‑1 (MQ=255) aaCGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CCTAAAAA‑C‑CACCCGTTCGGCAAACCTTGCCTCA‑Atacgtt > 1:544857/1‑234 (MQ=255) aaCGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTGTCGCTTTCTT‑TC‑GGGCCCGGGTT‑TATAAACA‑CACAC‑CGTTTGGCAAACGTTTcccccaacaagt > 2:702750/1‑229 (MQ=255) aaCGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGGTTTGGTAGATT‑TC‑CGGCCGGGGTT‑CATAAAAC‑C‑CACTGGGTCGGCAAACGTTGCCTCC‑ATAAGtt > 1:616463/1‑239 (MQ=255) aaCGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGGTTCGTTAGCTT‑CC‑GTGCCGGAGGT‑CATAAACA‑C‑CACGCGGTCGGCAAACGTTGTCTCA‑ATCAggt > 1:543868/1‑237 (MQ=255) aaCGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGCTTCTTTTGCCT‑CC‑GGTCCCGGGGT‑CATAACAA‑C‑AACCCGTGTGGCCAACGGTGACTCa‑aacc > 2:126879/1‑233 (MQ=255) cGTTGATGATGTCTGCCGGTTGCGGCCCAAAGCCGTCGGAATATTGTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTa < 1:265070/239‑1 (MQ=255) cGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTG‑CCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCCAACAGGCGTAATGGCGTGCCAGTTTAAAAGCGGGTTTGCTTGCTTCCC‑GTCCCGGGGTT‑‑AAAAAAA‑C‑CACGCGGTCGTCCAACGTTTGCTCACACCAGttt > 1:882237/1‑238 (MQ=255) gTGGGTGATGTGTGCCGTTTTCGGCCCAAAGCCGGTGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTAc < 2:482279/239‑1 (MQ=255) atgTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑TC‑GTGCCGGGGTT‑CATAAACA‑C‑AACGCGTTCGGCAAACGTTGCCTCC‑ATCCGTTTTCGccccaa > 1:131724/1‑236 (MQ=255) ccGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑TGGCCGGAGTT‑CATAAACA‑C‑CACGCGTTTGGCAAACGTTGCCCCC‑ACCAGTTTACGCCCCACACGCac > 1:881255/1‑237 (MQ=255) ccAACGCCGTCGGATTATTTTGGCGTCCCACCCGCCGAAAGGGTAAA‑AAGCGAGCGAACATGAAAAGCGTTATGGAAGGCAATAAGTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCAtt < 2:715732/239‑1 (MQ=255) ccAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCAt < 1:48944/238‑1 (MQ=255) aaGCCGTGGGAATATTTTGGGTGCCCACCCCCCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGt < 2:881255/239‑1 (MQ=255) cccGGCGGAATTTTTTGGCCGCCCCCCCACCGAAACGGTAAA‑CAGGGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGa < 2:132972/238‑1 (MQ=255) cggaggAATATGTTGGCTGCCCCCCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGa < 1:126879/233‑1 (MQ=255) cGTCGGAATTTTTTGGCCGCCCACCCAACGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGaa < 2:283433/238‑1 (MQ=255) cGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGaaa < 1:143149/239‑1 (MQ=255) ggcGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGaaaa < 1:279403/237‑1 (MQ=255) gTCGGAATTTTTTGGCTGCCCACCCCCCGAAACGGTAAA‑AAGCGAGCGACCATGAAAAGGTTTAAGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGaa < 2:785043/237‑1 (MQ=255) tttttGGCCGCCCCCCCACCGAAACGGTAAA‑CAGCGAGCGACCAGGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTg < 2:544857/238‑1 (MQ=255) ttGGCCGCCCCCCCACCGAAACGGTAAA‑CAGCGGGCGACCATGAAAGGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGata < 2:278595/239‑1 (MQ=255) cccacccaCCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCcaca < 1:823203/239‑1 (MQ=255) ccccccaacGAAACGGTAAG‑AAGCGATGGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCcaca < 1:369613/235‑1 (MQ=255) aaaCGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGccc < 2:716294/239‑1 (MQ=255) ggTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGGTCGGCAAACGTTGCCTCA‑ATCAGGTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGGTATGCCCCAGAGTTTCGCCCC‑ggg > 1:223783/1‑239 (MQ=255) gagcgaCCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGGTTACGCCCAAGACGCAGCGCCGGGTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCTGGGGTTTTTaagc > 1:80305/1‑237 (MQ=255) gcgaCCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAAcgcg < 1:702750/238‑1 (MQ=255) tGAAAAGCGTTATGGAAGGCAATAATTCTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGaa < 1:503054/185‑1 (MQ=255) ggTTAGGGAAGGCAATAATTTTGGTTTTGAACGGGCTATTACGCCCACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGa < 1:284918/238‑1 (MQ=255) ttttGGAAGGCAATAATTTTGGGTTTGAACGGGTTTTGACGCACCCAGGCGTAAGGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGAt < 2:638912/235‑1 (MQ=255) attatTTTGGTTTTGAACGGGTTTGGGCCCACAAGGGCGTAATGGCGTGCCAGTTTAAAGGGGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACC‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGCTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCaa < 2:360073/236‑1 (MQ=255) tgatttgtgTTTTGAACGGTCTATGACGCACCCGGGCGTACGGGGCTGCCAGTTTAAGGTCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACC‑C‑CGCGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTCCCGCCCAAGACGCCTCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCAAAc < 2:157509/231‑1 (MQ=255) gCACCCAGGCGTATTGGGGTGACAGTTTAAAGGGTGTTTACTTAGCTT‑CC‑GGGCCGGGGTT‑CATAAACC‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGaaa < 2:45986/239‑1 (MQ=255) cacacaGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAAt < 1:131272/239‑1 (MQ=255) acacaGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATa < 2:442508/63‑1 (MQ=255) acacaGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATa > 1:442508/1‑63 (MQ=255) acacaGGCGTAATGGCGTGCCAGTTTAAAGGCGGGTTCGTTAGCTT‑CC‑GTGCCCGGGTT‑CATAAACA‑A‑CACCCGGTCCGCAAACCTTGCCTCA‑ATCAGTTTACGCCCCAGACGCAGCCACGGGTCATTGGGGAAAACGTTACTAAAATGCCACAAGGATTCGCCCT‑GGGTTTTTAAAGCGTTCACACCCCCCGGAACGGAAAGGCCCCACCCCGTACATCCAATGCCAccccccgaaac > 2:518889/1‑231 (MQ=255) aGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGGGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGGTTACGCCCAAGACCCCGCGCCGGGTCATTGGTGAAAACGTTACTGATATTCCACAGAGGTTCGCCCT‑GGGGTTTTAAAGCGTTCACCCACCCCGGGTGGCAAAGGCCCCACCCCCTAAATACAATGACACCCCCGCAAACGACa > 2:118276/1‑239 (MQ=255) tAATGGCGTGCCAGTTTAAAGGCGTTTTCCTTAGGTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGGGTTCGGCAAACGTTGCCTCA‑ATCAGGTTACGCCCAAGCCGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACt < 1:652886/238‑1 (MQ=255) gTGCCAGTTTAAAGGGGGTTTCGTTTGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CCCGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTcc‑ttgcc < 2:498884/238‑1 (MQ=255) gCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGGTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATTCCACCCCCCGAATCGACAAAATcc‑ttgcctt > 1:715000/1‑238 (MQ=255) gTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGGTTACGCCCAAGACACAGCCCCGGTTCATTGGGGGAAACGTTACTGTTATGCCACAGAGTTTCGCCCT‑GGGGTTTTAACTCGATCACCCGCGCCGAGTGGGAATGGGCCCACGGCGTAACTGCAAAGCCACCCCCGCAATCGACAAACCCCTTTCCCTTCCTGACCCCacgta > 2:833067/1‑234 (MQ=255) tgtct‑CC‑GTGCCGGGTTT‑CA‑AAACACC‑CAACCGGTCGGGAAAGGTGTCCTCA‑ATCAGTTTACGCGCAAGTAGCAGGTCCGTTTCAATGGTGAAAACGTTACTGATATGCCACAGAGGTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCC‑TTGCCTTGCTGATCCCAGATTCGGCTGCCCt < 2:916056/235‑1 (MQ=255) aGCTT‑CC‑GTGCCGGAGTT‑CATAAACC‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCC‑TTGCCTTGCTGATCCCAGATTCGGCTGCCCt < 1:138094/239‑1 (MQ=255) tt‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCAc < 2:16028/141‑1 (MQ=255) tt‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCAc > 1:16028/1‑141 (MQ=255) | GATCATCCATCACCGCTTTCACTGCATGGAGATCGTTAAAGGGAACGTGGATGATGTCTGCCGGTTTCGGCCCAAAGCCGTCGGAATATTTTGGCTGCCCACCCACCGAAACGGTAAA‑CAGCGAGCGACCATGAAAAGCGTTATGGAAGGCAATAATTTTGGTTTTGAACGGGCTATGACGCACACAGGCGTAATGGCGTGCCAGTTTAAAGGCGGTTTCGTTAGCTT‑CC‑GTGCCGGAGTT‑CATAAACA‑C‑CACGCGTTCGGCAAACGTTGCCTCA‑ATCAGTTTACGCCCAAGACGCAGCGCCGGTTCATTGGTGAAAACGTTACTGATATGCCACAGAGTTTCGCCCT‑GGGTTTTTAACGCGTTCACCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCC‑TTGCCTTGCTGATCCCAGATTCGGCTGCCCT > NC_000913/3489625‑3490086 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |