Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)110 (1.350) 72/284 0.0 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)105 (1.290) 59/284 0.3 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 195 total aligned reads displayed.

GCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATT  >  NC_000913/1979344‑1979627
                                                                                                                                              |                                                                                                                                             
tggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                               <  1:1369170‑M1/1‑1 (MQ=255)
tggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc                                                                                                                                               >  1:1260675‑M1/143‑143 (MQ=255)
  gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaattgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa                                                                                                                                             >  1:756808‑M1/141‑143 (MQ=255)
  gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa                                                                                                                                             <  2:433365‑M1/3‑1 (MQ=255)
  aaaaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTa                                                                                                                                             >  1:1448865/1‑143 (MQ=255)
   aaaaTGAAACAGGAATAATTGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTaa                                                                                                                                            <  2:157660/143‑1 (MQ=255)
   aaaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTaa                                                                                                                                            <  1:700496/143‑1 (MQ=255)
    gataacgccttaaatgtcgaagaaacgggctaaataggctgattcaaggcatttacgggagaaaaaatcggcgcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                           >  2:1441979‑M1/139‑143 (MQ=255)
        acgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                       >  2:1129719‑M1/135‑143 (MQ=255)
          gccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAttaaaga                                                                                                                                     <  1:1281690‑M1/11‑3 (MQ=255)
           ccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATAc                                                                                                                                    <  1:142396‑M1/12‑1 (MQ=255)
               gAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaa                                                                                                                                <  1:1005723‑M1/143‑13 (MQ=255)
               aaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaag                                                                                                                                <  1:868711‑M1/16‑1 (MQ=255)
               aaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATCAAATACaaag                                                                                                                                <  2:196591‑M1/16‑1 (MQ=255)
                  tggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaa                                                                                                                             >  1:952380‑M1/125‑143 (MQ=255)
                  taatCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaa                                                                                                                             <  2:1358570‑M1/143‑16 (MQ=255)
                      gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGca                                                                                                                         <  2:1150228‑M1/23‑1 (MQ=255)
                       aagaaacggtctaaataggctgattcaaggcatttacggtagaaaaaatcggctgaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaa                                                                                                                        <  1:755452‑M1/24‑1 (MQ=255)
                          aaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaacaa                                                                                                                     >  1:255741‑M1/117‑143 (MQ=255)
                           aacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                    >  2:834614‑M1/116‑143 (MQ=255)
                             ggATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatat                                                                                                                  <  2:1310374‑M1/143‑27 (MQ=255)
                               gtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcggacgtgaagaagttcagcgcttatacgcaccttccCTACTTAAATACACAGAAAGGCAAAAATAAAc                                                                                                                <  2:696410‑M1/32‑1 (MQ=255)
                               gtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAAc                                                                                                                <  2:1379108‑M1/32‑1 (MQ=255)
                               aTGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatga                                                                                                                <  2:336507‑M1/143‑29 (MQ=255)
                                    aataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaat                                                                                                           <  2:101719‑M1/37‑1 (MQ=255)
                                    aataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaat                                                                                                           <  1:1083194‑M1/37‑1 (MQ=255)
                                       aggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgtt                                                                                                        <  1:279031‑M1/40‑1 (MQ=255)
                                         gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaa                                                                                                      <  1:1372996‑M1/42‑1 (MQ=255)
                                         caGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                      <  2:1031482‑M1/143‑39 (MQ=255)
                                         caGACAAAATAACTCGCCGTAAATAATCATCTGCTATACATAATCACTGTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                      <  2:1151332‑M1/143‑39 (MQ=255)
                                          ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat                                                                                                     >  2:877489‑M1/101‑143 (MQ=255)
                                           tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaatg                                                                                                    <  2:520583‑M1/44‑1 (MQ=255)
                                           gTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAACCAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgt                                                                                                    >  1:53267‑M1/1‑103 (MQ=255)
                                            tCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgggatcatgtttgtc                                                                                                   <  1:934066‑M1/143‑42 (MQ=255)
                                            tCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTCACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtc                                                                                                   >  1:960999‑M1/1‑102 (MQ=255)
                                              aaaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgaggtcatgtttgtcat                                                                                                 >  1:1162473‑M1/1‑100 (MQ=255)
                                              aaaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat                                                                                                 >  1:701936‑M1/1‑100 (MQ=255)
                                                 aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcacctaccCTAATAAAATACAAAGAAAGGCAACAACCAACTGAATGTTAATGAAATGt                                                                                              <  2:126734‑M1/50‑1 (MQ=255)
                                                  aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtt                                                                                             <  1:241654‑M1/51‑1 (MQ=255)
                                                  aggcatgcacgtgagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtt                                                                                             >  2:1240853‑M1/93‑143 (MQ=255)
                                                   aaCTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                                                                            <  2:44193‑M1/143‑49 (MQ=255)
                                                     catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa                                                                                          >  1:1401979‑M1/90‑143 (MQ=255)
                                                     catctacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaattcccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa                                                                                          >  1:1194739‑M1/90‑143 (MQ=255)
                                                     catataggagagaaaaaatcggctaaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa                                                                                          >  2:217242‑M1/90‑143 (MQ=255)
                                                       tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagcagaatttccccgctcattagcaatttttCTTATTAAATTCAAAGAAAGGCAACAATCAACTTAATGATAATGAAATGTTttaga                                                                                        <  1:669607‑M1/56‑3 (MQ=255)
                                                        ttacgggagaaaaaagcggctcaaacatgaagaaatggaatgactgagtcagccgagaagaatttccccgcgtattcgcaccttccCTAATTAAAGACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACat                                                                                       >  2:1352426‑M1/87‑143 (MQ=255)
                                                          acgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACatat                                                                                     >  2:672672‑M1/85‑143 (MQ=255)
                                                          acgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGGTAATGAAATGTTTTACatat                                                                                     <  1:1000816‑M1/59‑1 (MQ=255)
                                                            gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGACATGTCTTACttatat                                                                                   <  1:384794‑M1/61‑1 (MQ=255)
                                                             aaaTAATCATCTGCGATAAATAATCACTTTCAGGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaac                                                                                  <  1:584965‑M1/143‑59 (MQ=255)
                                                              gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTa                                                                                 <  1:783860‑M1/63‑1 (MQ=255)
                                                              aataatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCACACAACAAACAAAtgaagatgcgaacaagtccctgatatgagatcatgtttgtcatctggactcatagacca                                                                                 >  2:506695‑M1/1‑84 (MQ=255)
                                                               agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTaa                                                                                >  1:1334204‑M1/80‑143 (MQ=255)
                                                                 aatCATCTGCTATAAATAATCACTTTCTTGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                              <  2:634989‑M1/143‑63 (MQ=255)
                                                                  atcatcTGCTATAAATAAGCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt                                                                             <  1:555692‑M1/143‑64 (MQ=255)
                                                                   aaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAACGAAAGGCAACAATCAACTTATTGTTAAGAAAACGTATTACATATATTAACCAc                                                                            <  1:197304‑M1/68‑1 (MQ=255)
                                                                   aaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCAc                                                                            <  1:499332‑M1/68‑1 (MQ=255)
                                                                      atcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTg                                                                         <  1:640936‑M1/71‑1 (MQ=255)
                                                                        tGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatca                                                                       >  2:139913‑M1/1‑74 (MQ=255)
                                                                          cTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatg                                                                     <  1:1225134‑M1/143‑72 (MQ=255)
                                                                           tataAATAATCACTTTCATGCACTACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagatcagggttcatcatga                                                                    <  2:1222087‑M1/143‑73 (MQ=255)
                                                                           tataAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACGTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                    <  2:781102‑M1/143‑73 (MQ=255)
                                                                                 taatCACGTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                                                              <  1:1440812‑M1/143‑79 (MQ=255)
                                                                                   atCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaa                                                            <  2:964701‑M1/143‑81 (MQ=255)
                                                                                    gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGaa                                                           <  1:174458‑M1/85‑1 (MQ=255)
                                                                                     cACTTGCATGCAATACCAGATAAGCTATTTGTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaact                                                          <  2:437659‑M1/143‑83 (MQ=255)
                                                                                      agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATc                                                         <  2:955997‑M1/87‑1 (MQ=255)
                                                                                         ttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaagctgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacc                                                      <  1:730603‑M1/143‑87 (MQ=255)
                                                                                          atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTa                                                     >  2:1191029‑M1/53‑143 (MQ=255)
                                                                                          atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTa                                                     >  1:408298‑M1/53‑143 (MQ=255)
                                                                                           cATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACACACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctt                                                    >  2:514815‑M1/1‑55 (MQ=255)
                                                                                            gaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTaca                                                   <  1:539395‑M1/93‑1 (MQ=255)
                                                                                              gCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc                                                 <  1:1298256‑M1/143‑92 (MQ=255)
                                                                                                   aCCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca                                            <  1:376170‑M1/143‑97 (MQ=255)
                                                                                                      agtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACACTCAACTTAATGTTAATGAACTGTTTTACATATAGTCCCCACTCATTTAATGCGGAGAATCATTACTCTATTTTCtt                                         <  2:300634‑M1/103‑1 (MQ=255)
                                                                                                      aGATAAGCTATTTTTAAACAGACACTTACCGCACAACAACCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagcacagggttcatcatgagtcatcaacttaccttcgccgacagtg                                         >  1:964442‑M1/1‑44 (MQ=255)
                                                                                                          aaGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccccgatatgagagcatgtttgtcatctggagccatagaacagggttcatcatgagtcagcaacttaccttcgccgacagtgaatt                                     <  2:167565‑M1/143‑104 (MQ=255)
                                                                                                             cTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttggtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgcagacagtgaattcag                                  >  2:478813‑M1/1‑37 (MQ=255)
                                                                                                               aTTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgggtcatcaacttaccttcgccgacagtgaattcagca                                <  2:764033‑M1/143‑109 (MQ=255)
                                                                                                               aTTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                                <  2:960999‑M1/143‑109 (MQ=255)
                                                                                                               aTTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                                <  1:1154454‑M1/143‑109 (MQ=255)
                                                                                                               aTTTTTAAACACACACTTCCCGCACAACAATCTAAtgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                                <  1:771736‑M1/143‑109 (MQ=255)
                                                                                                                gaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACAt                               <  2:797442‑M1/113‑1 (MQ=255)
                                                                                                                  agaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACAttt                             >  1:1120239‑M1/29‑143 (MQ=255)
                                                                                                                   ttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcctgtttgtcaactggagccatagaacagggttcatcatgagtcatcaacttacctccgccgacagtgaattcagccgtaa                            >  1:605712‑M1/1‑31 (MQ=255)
                                                                                                                   gaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTg                            <  1:1041497‑M1/116‑1 (MQ=255)
                                                                                                                   gaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAACACTTGGTTAATGCGGAGAATCAGTAGACTATTTTCTTGTAGTTACATTTg                            <  1:465351‑M1/116‑1 (MQ=255)
                                                                                                                         ccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATta                      >  1:824142‑M1/22‑143 (MQ=255)
                                                                                                                         aGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccg                      <  2:1230200‑M1/143‑119 (MQ=255)
                                                                                                                          gccgctcattcgccacttccCTGATTAAATACAAAGAAAGGCAACAATCAACTTAATGTAAATGAGATGTTGTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATtat                     >  1:1442575‑M1/21‑143 (MQ=255)
                                                                                                                            cgcttatccgcaccttccCTACTTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTatat                   >  2:560215‑M1/19‑143 (MQ=255)
                                                                                                                               taaccGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagac                <  1:975083‑M1/141‑125 (MQ=255)
                                                                                                                                  ttcgcaccttccCTAATTAAATACAAAGAAAGGCAAGAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCAc             <  1:936314‑M1/131‑1 (MQ=255)
                                                                                                                                      acaacaATCTGAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaa         <  1:895869‑M1/143‑132 (MQ=255)
                                                                                                                                        ccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAg       <  2:690839‑M1/137‑1 (MQ=255)
                                                                                                                                        aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga       >  1:1183765‑M1/1‑10 (MQ=255)
                                                                                                                                        aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga       >  2:1093635‑M1/1‑10 (MQ=255)
                                                                                                                                            ccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGAt   <  1:1235469‑M1/141‑1 (MQ=255)
                                                                                                                                            aaCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatt   <  1:1355746‑M1/143‑138 (MQ=255)
                                                                                                                                             aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcggtaagcgccgccagaccagaaaagagattt  >  2:419329‑M1/1‑5 (MQ=255)
                                                                                                                                              |                                                                                                                                             
GCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATT  >  NC_000913/1979344‑1979627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.