Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,815,859	Δ82 bp		[rph]–[rph]	[rph], [rph]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3815859	3815940	82	71 [0]	[0] 72	[rph]–[rph]	[rph],[rph]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3815858	0 (0.000)	68 (0.900)	60/264	0.1	100%	pseudogene (24/48 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
	?	NC_000913	3815941 =	0 (0.000)					pseudogene (609/669 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

CACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815718‑3816000                                                                                                                                             |                                                                                                                                               cacCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcg                                                                                                                                              <  1:552987‑M1/143‑3 (MQ=255)  acCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCCCCTCATCTTGCTTTTCTACAGACAAACAAAAGGCGACTCGTCCGTCGCCTTGAAAATCAGTTTGCCAGCGCCGCGTTCTGCcct                                                                                                                                             >  1:546445‑M1/1‑140 (MQ=255)   ccTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTGGCCAGCGCCGCCTTCTGCcgtc                                                                                                                                            <  1:1219260‑M1/143‑5 (MQ=255)    cTGCTTGCTAGGCGCAAATTCGATAAGCTGGCGCTGATATGGTCTCATGCCTTCGCTCCTCATCTTACTTTTGTACAGACAAAACAAAGGCGCCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcc                                                                                                                                           <  2:893097‑M1/143‑6 (MQ=255)       cttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAAACAGTCTGCCAGCGCCGCCCTCTGCcgtcccgc                                                                                                                                        >  2:1234208‑M1/1‑135 (MQ=255)       cttgctAACCGCGAATTCAATCAACTGGCGCGGCTATGGTTTCAGGCCTTCGCTGCTCATCTTACTTGTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGAGTGCCAGCGCCGCCTTCTGCcgtcccct                                                                                                                                        <  1:625564‑M1/143‑9 (MQ=255)        ttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTTCcgtcccctg                                                                                                                                       <  1:848173‑M1/143‑10 (MQ=255)          ggtaggcgccaattCAGTGAACTGGCGGTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgca                                                                                                                                     <  2:1057755‑M1/138‑12 (MQ=255)              aGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttc                                                                                                                                 >  1:1029859‑M1/1‑128 (MQ=255)              aGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttc                                                                                                                                 <  1:589880‑M1/143‑16 (MQ=255)              aGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttc                                                                                                                                 >  1:984524‑M1/1‑128 (MQ=255)                       tCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcg                                                                                                                        <  1:339205‑M1/143‑25 (MQ=255)                         aaTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcc                                                                                                                      >  1:1075481‑M1/1‑117 (MQ=255)                          aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacgtcaatgatgcgccc                                                                                                                     >  1:283582‑M1/1‑116 (MQ=255)                                 gccgcttATATGGTTGAATGCGTTCGCTCCTCATCTTACTTGTCTACAGACAAAAAAAAGGCGACTCATTAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                              <  1:41480‑M1/141‑35 (MQ=255)                                  gctctgaTATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAGTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgg                                                                                                             <  2:260031‑M1/140‑36 (MQ=255)                                    gcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcagtgatgcgcccgtcttcgggc                                                                                                           >  1:684096‑M1/1‑106 (MQ=255)                                    gcTGATATGGTTTCATGCCTTCGCGCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttgaatgatgcgccagtcttcggtc                                                                                                           >  2:582954‑M1/1‑106 (MQ=255)                                      tGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgcgcat                                                                                                         >  2:1136146‑M1/1‑104 (MQ=255)                                        agcgagtttcaTGCCTTCGCTCCTCATCTTGCTTTTCTACATACGAAAAGAACGCGGCTCATCAGTGGCCTTAAGAATCAGTTCGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatca                                                                                                       <  2:1348800‑M1/138‑42 (MQ=255)                                          atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgattcgcccgtcttcggtcatccct                                                                                                     >  1:795428‑M1/1‑100 (MQ=255)                                              tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGACGCCTTAACAGTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgt                                                                                                 >  2:578720‑M1/1‑96 (MQ=255)                                                tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                               <  1:1271429‑M1/143‑50 (MQ=255)                                                  aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcat                                                                                             >  1:83332‑M1/1‑92 (MQ=255)                                                     ccTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcactcccatgatacccccgtcctcgttcctcaccacgtccatgtc                                                                                          >  2:562367‑M1/1‑89 (MQ=255)                                                       ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgg                                                                                        >  2:698452‑M1/1‑87 (MQ=255)                                                        tCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggt                                                                                       <  2:495776‑M1/143‑58 (MQ=255)                                                         cGCCCCTCATCTCACTGTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccatgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtc                                                                                      <  1:400169‑M1/143‑59 (MQ=255)                                                          gCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtct                                                                                     <  2:1339042‑M1/143‑60 (MQ=255)                                                           ctcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcagctcggtctc                                                                                    >  1:1064529‑M1/1‑83 (MQ=255)                                                            tcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctct                                                                                   >  1:73059‑M1/1‑82 (MQ=255)                                                              ctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgccccctgcacttcaatcatgcgccagtcttcggtcctcactacggccctcccggtctctgc                                                                                 >  2:559026‑M1/1‑80 (MQ=255)                                                              ctcATCTTACTTTCCTACAGACAAAAAAAAGGCGCCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgc                                                                                 <  2:377845‑M1/143‑64 (MQ=255)                                                               tcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcctgtcggtctctgcg                                                                                >  1:175265‑M1/1‑79 (MQ=255)                                                                 aTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgaggc                                                                              >  1:212928‑M1/1‑77 (MQ=255)                                                                    ttACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                           <  1:1324784‑M1/143‑70 (MQ=255)                                                                        ttttCTACAGACAAAAAAAAGTCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgctcatcactacgctcacgtcggcctctgcagcagattct                                                                       >  1:36719‑M1/1‑70 (MQ=255)                                                                        ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccactcttcggtcatcactacgttcatgtcggtctctgcggctgagtgc                                                                       >  2:509606‑M1/1‑70 (MQ=255)                                                                         tttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgccttcgctcatcactacgttcatgtcggtctctgcgacagagtctt                                                                      >  1:1089061‑M1/1‑69 (MQ=255)                                                                          ttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttc                                                                     <  1:1374952‑M1/143‑76 (MQ=255)                                                                             tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgatcatgtcggtctctgaggcacagtgttcaac                                                                  >  2:987933‑M1/1‑65 (MQ=255)                                                                               cAGGCAAAACAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgt                                                                <  2:891376‑M1/143‑81 (MQ=255)                                                                                     aacaaaaggcGCCTCATCAGTCGGCTCAAGAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcca                                                          <  2:1435821‑M1/140‑87 (MQ=255)                                                                                     aaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcctcactacgttcatgtcggtctctgcggcagagtcttccacgtcttccc                                                          >  1:666114‑M1/1‑57 (MQ=255)                                                                                     aaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcca                                                          >  1:881977‑M1/1‑57 (MQ=255)                                                                                        aaaaGGCGACTTATCAGTCGCCTTAAAAATCAGTCTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcactgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat                                                       <  1:380330‑M1/143‑90 (MQ=255)                                                                                               gACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaac                                                <  1:353356‑M1/143‑97 (MQ=255)                                                                                                   catcaGTCGACATAAAGAGCGGTTTGCCAGCGCCGCCTTCGGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgct                                            <  1:606744‑M1/143‑101 (MQ=255)                                                                                                    atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcgt                                           >  1:220931‑M1/1‑42 (MQ=255)                                                                                                       aGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcgtcactacgttcatgtcggtctctgcggcagagtcttcaccgtattccagctcgcaaacagctctgc                                        >  1:760358‑M1/1‑39 (MQ=255)                                                                                                       aGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgc                                        >  1:939594‑M1/1‑39 (MQ=255)                                                                                                          cGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgt                                     <  1:1409091‑M1/143‑108 (MQ=255)                                                                                                              ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcac                                 >  1:1041935‑M1/1‑32 (MQ=255)                                                                                                                agaaatcAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcctgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacat                               >  1:428526‑M1/3‑30 (MQ=255)                                                                                                                aaacagcagcttgCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaa                               <  1:317914‑M1/137‑114 (MQ=255)                                                                                                                   aaTCACTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattc                            <  2:201679‑M1/143‑117 (MQ=255)                                                                                                                      cggttTGCCGGCGCCGCCTTCTGCcgtccgctgcacttcgatgatgcgcgcgtctgcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccga                         <  2:36719‑M1/141‑120 (MQ=255)                                                                                                                        gTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatccctacgttcatgtcggtctctgcggcagagtcctcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgccg                       >  1:851246‑M1/1‑22 (MQ=255)                                                                                                                         tttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacacttccgaccg                      >  1:693071‑M1/1‑21 (MQ=255)                                                                                                                          ttGCCAGCTCCGCCTTCTGCcgtcccctgcaattcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacaga                     <  1:57194‑M1/143‑124 (MQ=255)                                                                                                                          ttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacaga                     >  1:135573‑M1/1‑20 (MQ=255)                                                                                                                            gCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcagcgtattccagatcgccaaccgcggcgccgttcacaattccgacagaaa                   >  1:297665‑M1/1‑18 (MQ=255)                                                                                                                            gCCAGCGCCGCCTTCTGCcgtcccctgcacttcaataatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattcagccagaac                   >  1:937656‑M1/1‑18 (MQ=255)                                                                                                                              cAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcacaccgcttcgccgttcacgatcccgacagaaacg                 >  1:210480‑M1/1‑16 (MQ=255)                                                                                                                              cAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaact                 <  1:717979‑M1/143‑128 (MQ=255)                                                                                                                               aGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccaggtcgcaaaccgcttcgccgttcacaattccgacagaaactg                >  1:404246‑M1/1‑15 (MQ=255)                                                                                                                                 cgccgcCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtcgctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcg              <  2:283582‑M1/143‑131 (MQ=255)                                                                                                                                  gcctccTTCTGCcgtccgctgcacttcaatggtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgaggcagagtcttcaacgtattccagatcgcacaccgcttcgccggtcacaattccgacagaaactgcgg             <  1:629015‑M1/143‑132 (MQ=255)                                                                                                                                    cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgctcacaactccgaccgcaactccggct           >  1:586551‑M1/1‑10 (MQ=255)                                                                                                                                        ttCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattcctacagacactgcggctacca       >  2:674686‑M1/1‑6 (MQ=255)                                                                                                                                             ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccct  >  2:189768‑M1/1‑1 (MQ=255)                                                                                                                                             |                                                                                                                                               CACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815718‑3816000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑