New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3946053	2 (0.040)	5 (0.110)	5/276	6.0	72.0%	noncoding (2350/2904 nt)	rrlC	23S ribosomal RNA of rrnC operon
	?	NC_000913	= 3946069	NA (NA)					noncoding (2366/2904 nt)	rrlC	23S ribosomal RNA of rrnC operon
Rejected: Coverage evenness skew score above cutoff.

CCCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3945909‑3946053 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTG  <  NC_000913/3946069‑3945929                                                                                                                                                                                                                                                                                                tCCGTGATCCGGGTTGCTGACAGTGTTTGGTGGGTAGTTTGACTGGGGCTGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGATAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACT                                                                                                                                                 <  1:827079/142‑1                      AGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCA                                                                                                                            <  1:77405/143‑1                         GTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTC                                                                                                                         <  2:364941/143‑1                             GGTGGGTAGGTTGGCGGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGAGCACGAGGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTCGTGCAATGGCATAAGCCAGCTTGACGGCTCGCGCCGTCACGCTCGCAGTCAAGC                                                                                                                     <  2:31710/143‑1                                          ACTGGGGCGGTCTCCCCCTAAAGAGTATCGGAGGGGCCCGAAGGTTGGCTGATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCACGCTGGCTTATGCCAT                                                                                                        <  2:23366/143‑1                                             GGGGCGGTCTCCTCCGAAAGAGGAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGC                                                                                                     <  1:398952/143‑1                                                                                                                                              CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCCTTGCACTAACCTCCTGATGTCCGACCAGGATTCGCCAACCTTCGTGCTCCTCCGTTACTCCTCAGGCGGAGACCGCCCCAGTCCACCTACCCACCAGACAC    >  2:769696/1‑143                                                                                                                                              CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACAC    >  2:95643/1‑143                                                                                                                                              CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGACTAGCCAACCCTCGTGCTCCTCCGTTACTCTTTAGGAAGAGCCCGCACCAGTCAAACTACCCACCAGACAC    >  2:28542/1‑143                                                                                                                                                GCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGCTGTCCGACCAGCATTAGCCAACCTTCGTGCTCCACCGTTAACCTTTAGGAGGAGACCGCCCCACCCAAACTCCCCACCAGACACgg  >  2:342149/1‑141                                                                                                                                                GCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTCCACTTTACGATGAGTCCGCCCAAGTCAAACTACCCACCAGACACTG  >  1:713177/1‑143                                                                                                                                                GCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTG  <  2:328821/143‑1                                                                                                                                                                                                                                                                                                CCCGTGATCCGGGTTGCGGACAGTGTCTGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3945909‑3946053 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTACTCTTTAGGAGGAGACCGCCCCAGTCAAACTACCCACCAGACACTG  <  NC_000913/3946069‑3945929

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.