| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4185519 | 48 (1.010) | 3 (0.070) | 3/274 | 7.1 | 6.3% | coding (170/4224 nt) | rpoC | RNA polymerase, beta prime subunit |
| ? | NC_000913 | = 4185543 | 43 (0.940) | coding (194/4224 nt) | rpoC | RNA polymerase, beta prime subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCAGACTAAAACCGAAGAGTTTGATGCGATCAAAATTGCTCTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACCCAGACTAAAGTACGCCGTGA > NC_000913/4185378‑4185648 | cgcAGACTAAAACCGAAGAGTTTGATGCGATCAAAATTGCTCTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAATCAGAACATGACGACCattta > 1:250901/1‑142 (MQ=255) cAGACTAAAACCGAAGAGTTTGATGCGATCAAAATTGCTCTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTg > 1:224553/1‑143 (MQ=255) cAGACTAAAACCGAAGAGTTTGATGCGATCAAAATTGCTCTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTg > 1:531281/1‑143 (MQ=255) aaaaCGAAAGAGTGGGATGCGGACAAAAGAGCTCGGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCg < 1:129567/143‑1 (MQ=255) cGAAGAGTTTGATGCGATCAAAATTGCTCTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCt > 1:601513/1‑143 (MQ=255) gagTTTGATGCTATCCAGGTTGCTGTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTgg < 2:317290/143‑1 (MQ=255) tttGATGCGATCAAAATTGCTCTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTCTACTTGGGcc > 2:474100/1‑143 (MQ=255) ttGATGCGATTAATATTGCTCTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCg < 2:485869/143‑1 (MQ=255) ttGATGCGATCCAACTTGCTCTCGCTCCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGACACCATCAACTCCCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCg < 1:385028/143‑1 (MQ=255) tGCGATCAAAATTGCTCTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTaa > 2:37454/1‑143 (MQ=255) ggagATGAAAGTTGCTCTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTGAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTCTCTGCGCCCGTATCTTTGGGCCGGTaa < 1:797817/140‑1 (MQ=255) cGACCAATATTGCTCTGGCTTCGCCAGCCATGATCCGTTCATGGTCTTTCGTTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTaaaa < 1:68837/143‑1 (MQ=255) gATCAAAATTGCTCTGACTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGCCGGCATTTTCTGCGCCAGTATGTTGGGCCCGGTcaaca > 2:389656/1‑141 (MQ=255) taagttGCTGTGGCTTCGCCAGACAGGGTCCGTTCATGGTCTTGCGGTGAAGGTAACGAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGGGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTa < 2:798883/139‑1 (MQ=255) aaaTTGCTCTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTCTCTTCGGGCCGGTAAAAGATTAc > 2:226361/1‑143 (MQ=255) ctcccgCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGc < 1:778244/138‑1 (MQ=255) tctGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATAAACTACCGTACGTTCAAACCAGAACGTGACGGCCTACACTGCGCCCTTCTCCTTGGGCCGGTAACAGATTAGGAGCGcc > 2:459633/1‑143 (MQ=255) gCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAACAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGGGCCCGTATCTTTGGGCCGGTGAAAGATTACGAGTGCCtgtg > 2:770616/1‑143 (MQ=255) gCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTTGACCGGTAAAAGATTACGAGTGCCtgtg > 1:733350/1‑143 (MQ=255) ttCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGGGCCTGTGCg > 1:419415/1‑143 (MQ=255) ccAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGATGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTaa > 2:421403/1‑143 (MQ=255) cATAATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACa < 1:10044/143‑1 (MQ=255) tGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAg < 1:725834/143‑1 (MQ=255) cccatCATGGGCTTTGGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGTCGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGcc < 2:552092/139‑1 (MQ=255) ccGTTCATGGTCGTTCGGTGAAGTTAAAGAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGcc < 2:196883/143‑1 (MQ=255) ccGTTCATCGCCTTTCGCTGAACTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGGGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGcc < 2:196885/143‑1 (MQ=255) cATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCGGTGCGCTCAGTACAAGCGCCTGaaa > 2:250498/1‑143 (MQ=255) tGGTCTTTCGGTGAAGTTAGAAAGCCGGAAACCAGCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAaca < 2:753565/143‑1 (MQ=255) tGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGCACGTGACGGCCTTTTCTGCGCCCTTATCTTTGGGCCGGTAACACGCTACGAGAGCCTGTTAGGTAAGTACAAGCGGCTGAAaca > 2:95891/1‑143 (MQ=255) tGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGAGGCTGAAaca > 1:211339/1‑143 (MQ=255) gtgtggtggTGAAGTTAAAGAGCCGGAAACCTTCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCTGTAAGTACAAGCGCCTGAAACAcc < 2:620865/136‑1 (MQ=255) tCTTTCGGTGAGGCGCAAGAGCCGGAGACCATCGACTACCGTACGTTCAATCGAGAACGTGACGGCCTTTTCTGCGCGCGTATCTGTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCg < 2:588152/143‑1 (MQ=255) cGGTGAAGTAAAAAAGCCGGAATCCATCAACTACCGTACGGTCAAAGCAGAACGGGACGGCCTTGTCTGCGCCCGTATCTGTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCg < 2:115890/143‑1 (MQ=255) ggTGAAGTTAAAAAGCCGCAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGt < 1:125281/143‑1 (MQ=255) tAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCtgtg > 1:653409/1‑143 (MQ=255) aaaaaGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTga < 1:137940/143‑1 (MQ=255) gCCGGAACCCATCACCTACCGCACGTTCAAACCAGAACGTGACGGCCGGTTCTGCGCCCGTACCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGt < 1:264975/143‑1 (MQ=255) ccGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGCGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGCAACACCGTGGCGTCATCtgtgcgcggtg > 1:749732/1‑136 (MQ=255) gAATCCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGATAAGTgcgg < 1:445752/143‑1 (MQ=255) aaaCCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTgcggc < 1:498751/143‑1 (MQ=255) cATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGCCACCTATGAGAAGTGCGGCGtgg > 2:406372/1‑141 (MQ=255) cATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGAGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTg > 1:485512/1‑143 (MQ=255) tCAACTACCGTACGTTCAAACAAAAACGGTACGTCCATTTCTGCGTCTTTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGaa < 1:534238/143‑1 (MQ=255) cGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACCCa < 1:570823/143‑1 (MQ=255) tACGGTCAAGCCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACCCAGa < 2:53738/143‑1 (MQ=255) aCGTTCAAGCCAGAGCGTTACGGCCTTTTCTGCGCCCGTGTCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACCCAGAc < 2:705067/143‑1 (MQ=255) cAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACCAGAGACACTTTGTTTAGGCCAAGCGCCTGAAACACCGTGGCGTCATCTGTGCGAAGTGCGGCGTTGAAGTGACCCGGACTCAAg > 1:769185/1‑143 (MQ=255) cAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAGGTGACCCAGACTAAAGTACGc > 1:515696/1‑143 (MQ=255) tgtgtCGGCGTTTTCTGCGCCGGGATCTTTGGGCCGGTAAAAGATTGCGAGTGCTTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACCCAGACTAAAGTACGCCGTGa < 2:680802/142‑1 (MQ=255) | CGCAGACTAAAACCGAAGAGTTTGATGCGATCAAAATTGCTCTGGCTTCGCCAGACATGATCCGTTCATGGTCTTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAACCAGAACGTGACGGCCTTTTCTGCGCCCGTATCTTTGGGCCGGTAAAAGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCCTGAAACACCGTGGCGTCATCTGTGAGAAGTGCGGCGTTGAAGTGACCCAGACTAAAGTACGCCGTGA > NC_000913/4185378‑4185648 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |