New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	257908 =	NA (NA)	40 (0.850)	34/284	0.4	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 1293039	0 (0.000)					intergenic (‑117/‑488)	hns/tdk	global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

AGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGT  >  NC_000913/1292900‑1293168                                                                                                                                            |                                                                                                                                  aGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggt                                                                                                                                <  1:409554‑M2/143‑4 (MQ=255) aGAATTTTAAGTGCTTCGCTCATTGTAGCAATATCCACCAGCAATTGGATGGTTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggt                                                                                                                                <  1:588322‑M2/143‑4 (MQ=255)       ttGAGTGCGTCGCTCATTGTAGTAATCTCAAACGTCTATTGGGGTGGTTTGTTGAGGTAAGAATAGAGTCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgac                                                                                                                          >  2:198742‑M2/1‑134 (MQ=255)            tGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaa                                                                                                                     <  1:67899‑M2/143‑15 (MQ=255)              cTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaact                                                                                                                   <  1:344392‑M2/143‑17 (MQ=255)                tCGCTCATTGTAGTAAGCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaactta                                                                                                                 >  1:349554‑M2/1‑125 (MQ=255)                 cGCTCATTGTAGTAATATTAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttat                                                                                                                >  2:249395‑M2/1‑124 (MQ=255)                   cTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactacaacttattg                                                                                                              <  2:423169‑M2/143‑22 (MQ=255)                           agtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtt                                                                                                      >  1:348813‑M2/1‑114 (MQ=255)                            gtaATCTCAAACGTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttt                                                                                                     >  1:116153‑M2/1‑113 (MQ=255)                                tctcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatg                                                                                                 >  1:408821‑M2/1‑109 (MQ=255)                                 ctcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgt                                                                                                <  2:537806‑M2/143‑36 (MQ=255)                                  tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtt                                                                                               <  1:458398‑M2/143‑37 (MQ=255)                                        ttATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcgaagttattggtagtgtgttatgttgagcta                                                                                         <  2:223912‑M2/143‑43 (MQ=255)                                                       ttgttgAGGTAATAATAGAGCCTTAAACTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                          >  1:250290‑M2/1‑86 (MQ=255)                                                           ggaGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtca                                                                      >  2:720263‑M2/2‑82 (MQ=255)                                                             aGGTAATAGTAGGGCCTTAATTTCTGTTGTGCATGAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATGTTGTGCCGattagtgactccagcttgttgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                    >  2:142342‑M2/1‑80 (MQ=255)                                                             aGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                    >  1:641646‑M2/1‑80 (MQ=255)                                                             aGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                    <  1:689290‑M2/143‑64 (MQ=255)                                                               gTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATATTGGACCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgca                                                                  <  2:465721‑M2/143‑66 (MQ=255)                                                                taataaTAGAGCCTTAAATTCAGTTGTGCAATAGTCAGGTATGTAAGTAATTCAAACTTGTTCTGTATTTTGTGTTTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcag                                                                 >  1:534689‑M2/1‑77 (MQ=255)                                                                    aacaGAGCCTTAAATTCAGTTGTGCCATAGCCAGGAAGGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttagtgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcc                                                             >  2:300183‑M2/1‑73 (MQ=255)                                                                           ccTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgacgacttcgtcatgcagctccaccgatt                                                      <  1:664178‑M2/143‑78 (MQ=255)                                                                             ttAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt                                                    >  2:215368‑M2/1‑64 (MQ=255)                                                                                 aTTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgcga                                                <  2:229450‑M2/143‑84 (MQ=255)                                                                                   tCATTTGTGCAATGGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgattactttgtcatgcagctccaccgattttgagaac                                              >  2:424666‑M2/1‑58 (MQ=255)                                                                                   tCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaac                                              >  1:732052‑M2/1‑58 (MQ=255)                                                                                         gtgCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacgtattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgagttcgacaacgacagc                                        <  2:414244‑M2/143‑92 (MQ=255)                                                                                           gCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgacttcaacttattgatagtgttttatgttcagataatgcacgatgactttgtgatgcagctccaccgattttgagaacggcagcga                                      <  2:717396‑M2/143‑94 (MQ=255)                                                                                            cAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttgttgatagtgttttatgttcagataatgcccgatgactttgtcatgcgactctcccgattttgagaacgacagcgat                                     <  1:659349‑M2/143‑95 (MQ=255)                                                                                                  ccAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgccgctccaccgattttgagaacgacagcgacttccgt                               <  1:282824‑M2/143‑101 (MQ=255)                                                                                                                  ttCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggt               <  1:384829‑M2/143‑117 (MQ=255)                                                                                                                  ttCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccagct               <  2:732991‑M2/143‑117 (MQ=255)                                                                                                                     aaaaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgct            <  2:227338‑M2/143‑120 (MQ=255)                                                                                                                       aaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagatcgaccgcgacttccgtcccagccgtgccagctgctgc          <  1:290898‑M2/143‑122 (MQ=255)                                                                                                                          tGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc       >  1:350867‑M2/1‑19 (MQ=255)                                                                                                                             tCTTTATTTTGTGCCGggtaatgactccatcttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcaga    >  1:240893‑M2/1‑16 (MQ=255)                                                                                                                             tCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgcctttgtcatgcagctccaccgattttgagaacgacagcgacttccgtccaagccgtgaaagggcctacctcaga    <  1:731310‑M2/143‑128 (MQ=255)                                                                                                                             tCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcaga    >  2:47090‑M2/1‑16 (MQ=255)                                                                                                                               tttATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgccaccgatt  <  2:28793‑M2/143‑130 (MQ=255)                                                                                                                                            |                                                                                                                                  AGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGT  >  NC_000913/1292900‑1293168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.