New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	781369 =	41 (0.870)	7 (0.150) +GAG	4/278	6.6	16.0%	noncoding (1/76 nt)	lysZ	tRNA‑Lys
	?	NC_000913	= 2521006	34 (0.720)					noncoding (76/76 nt)	valU	tRNA‑Val
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAA  >  NC_000913/2520867‑2521143                                                                                                                                            |                                                                                                                                          aaTTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAact                                                                                                                                        >  1:640485/1‑143 (MQ=255)           gAAAATGCGTTGACGCAGTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTa                                                                                                                              <  2:645541/143‑1 (MQ=255)            aaaaTGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAg                                                                                                                             <  1:710524/143‑1 (MQ=255)                tGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGtctc                                                                                                                         <  1:10422/143‑1 (MQ=255)                 gCGTCGACTCATTCTGGAACCGCCCTAGAATGCGACCCCACACAGCGGGGGTGATCAGCGCAGCTGGGCGAGCACCTCCCTTACAAGGAGCGGGTGGGCTGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTcc                                                                                                                        <  1:123903/143‑1 (MQ=18)                    ttGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTCCTTTCTGTCGCCTccgcc                                                                                                                     >  1:779457/1‑143 (MQ=21)                         tCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTACTTTCTGTCGTCTCCGCCGTGTa                                                                                                                >  1:75695/1‑143 (MQ=255)                         tCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTa                                                                                                                >  1:486588/1‑143 (MQ=255)                         tCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTa                                                                                                                >  1:475186/1‑143 (MQ=255)                         tCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACCTTCTGTAGTCTCCGCCgtgtc                                                                                                                >  1:67060/1‑142 (MQ=255)                         tCATTTTGAACTCTCCCTATAATGCGACTACACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGCCGGCGGTTCGATCCCGTCATCACCCCCCAACTACTTTATGTAGTCTCCGCCGTGTa                                                                                                                >  1:789047/1‑143 (MQ=255)                           aTTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGc                                                                                                              >  1:304739/1‑143 (MQ=255)                                     ctcCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTga                                                                                                    <  1:383777/143‑1 (MQ=255)                                                    cccgagacaGCGGGTGTGATGAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTGTGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAg                                                                                     <  2:126500/137‑1 (MQ=25)                                                       cacacaGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCGCGTAATAACACACAAACTAATTTATGTAGTCTTCAACGTGAAGCAAGAAATTGAGAAGTGGGAGATTacata                                                                                  >  1:422872/1‑139 (MQ=21)                                                       cacacaGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTCTGTAGTCTCCTCCGTGTAGCAGGAAACTGAGAAGTGGGTGATTAGCTc                                                                                  >  1:611367/1‑143 (MQ=255)                                                          acaGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGCAATTGAGAAGTGGGTGATTGGCTCAGc                                                                               >  1:401616/1‑143 (MQ=255)                                                             gCGGTGGGGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTgg                                                                            <  2:262270/143‑1 (MQ=255)                                                               ggggggGATTAGCTCGGCTGGGACAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTTTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGga                                                                          <  2:270194/143‑1 (MQ=255)                                                               gggggTGATTAGCTCAGCTGGGAGAGCCCCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGga                                                                          <  1:80287/143‑1 (MQ=255)                                                                 gggTGATTAGCTCAGCTGGGAGACCCACTCCATTATGGGTTGGTTGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGgaga                                                                        <  1:808832/143‑1 (MQ=37)                                                                   gttaTTACCCCAGCTGGGACCGCACCTCCGTTTCAAGGAGGGGGTCGGCCGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGc                                                                      <  1:27321/140‑1 (MQ=37)                                                                            tCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTCTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCtt                                                             >  1:283080/1‑143 (MQ=255)                                                                                     cgaccaccacCCGTACAAGGAGGGGGCCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTGATGTAGGCGGCGCCGTGTAGGAAGAGATTGGGGAGCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAaggagg                                                    <  1:160488/139‑1 (MQ=25)                                                                                            cTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGACTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTcgg                                             >  1:643717/1‑143 (MQ=255)                                                                                                 cgccAAGCAGCGGGTCGGCGGTGCGATCCCGTCAGAACCCGCCAACTAGTTTATGTACTCCCCGCCCTGTAGCAAGAAATTGAGACGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGtt                                        <  1:360944/140‑1 (MQ=21)                                                                                                     aaGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTACTGTCGGTAGCCTCCGCCGTGCAGCCAGAAATGCAGCGGGGGGGGATTGGCTCTGCTGGGAGAGCACGACCCTGGCGGGGGGCGGGTCGGCGGGACGAt                                    >  2:726194/1‑143 (MQ=12)                                                                                                             ggTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCCAGAAATTGAGAAGTGGGGGATTAGCCCAGCTGGGAGAGCACCTCCCTTACACGGAGGGGGGCGGCGGGGCGATCCCGgcat                            >  2:265003/1‑143 (MQ=37)                                                                                                               tCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTCTGTAGTCTCCGCGGTATAGCAAGAGACTGCGAAGCGCGTGATTAGCTCAGCTGGGAGAGCACCTACCGTACAGGGAGGAGATCGCCGGACAGACCCCGgcatcc                          >  2:77977/1‑142 (MQ=19)                                                                                                                 ggcggTTCGATCCCGTCAGTACTGCCCTACTACTTTATGTAGCCTCCGCGGTGTAGCAAGAAATTGAGCAGTGGGTGATTAGTTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATcacc                        <  1:552066/143‑1 (MQ=18)                                                                                                                  gcggTTCGATCCCGTCATCACCCACCACCTCCTTTAGGTAGCCTCCGCCGTGTAGCAATACACTGTGAAGTGGGTGATTAGCGGCGCTGGGAGAGCACCTCCCTCACAAGTAGGGGATCGGCCGATCGGCCCCCTCATcaccc                       >  2:389413/1‑143 (MQ=16)                                                                                                                             ccGTCATCACCCGCCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTtctc            <  1:680397/143‑1 (MQ=255)                                                                                                                                  atcaCCCACCATCTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAg       <  1:833199/143‑1 (MQ=255)                                                                                                                                       ccaccaACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTcaa  >  1:457844/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                          AATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAAA  >  NC_000913/2520867‑2521143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.