| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 4 (0.080) | 36 (0.860) | 30/252 | 0.4 | 86.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 8 (0.190) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
GGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA > NC_000913/1209480‑1209759 | cgATAAGCCGCGGCCAGTTCCGTGTCTGCTCCACCAGCAGCAGCGGCACCATGGCATTGCAGCCCGTCTGTTCGCGGAGCGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAGGtt < 2:641645/142‑1 (MQ=255) ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGATTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaa > 1:183203/1‑143 (MQ=255) tgcggcagtccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaaa < 2:817907‑M2/12‑1 (MQ=255) gcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATga‑a < 1:110596‑M2/16‑1 (MQ=255) gcattacaccaccaccgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATga‑a < 1:18579‑M2/16‑1 (MQ=255) ccacccccactgaatggttactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaacgaaCGTTTCTGAAAATGA‑GGAAAt > 2:456881‑M2/123‑143 (MQ=255) gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACACACGTTTATAAAACTGA‑AGAAATcaca > 2:697084/1‑143 (MQ=255) ccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGC‑AGAAATAACa > 1:414835‑M2/119‑143 (MQ=255) cccactgaatgattactgtttgctccataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACaa < 2:407301‑M2/26‑1 (MQ=255) cccactgaatgattactcattgctcaataccaccaatcataaccggtatggctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACaa < 1:756528‑M2/26‑1 (MQ=255) cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTTGCTGAAGGCCACGGAACCGGGACACCAACAGGTACTGCAGAGCCTTCTCCCACACCAACGTTTATGAACATGA‑AGAAATAACAAACAAATGGcctc > 2:417454/1‑143 (MQ=255) cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGCTTGTGAAAATAA‑GGATAGAACAAGCAAAGGGcatc > 2:405925/1‑143 (MQ=255) ggattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgcagccgttgcttcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTc < 2:377676‑M2/42‑1 (MQ=255) attgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCt > 1:370365‑M2/100‑143 (MQ=255) tcccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAcc < 1:373971‑M2/53‑1 (MQ=255) taccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgatgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAAGGGCATCATTCCTGCTTttagc > 1:769478‑M2/91‑141 (MQ=255) taccaccaagcagaaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAcc < 1:832205‑M2/53‑1 (MQ=255) acccatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 2:88494‑M2/57‑1 (MQ=255) tttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGA‑AGAAATAACAAGCACATGGCATCATTCCTGCTTTTACCAGGGGGa > 1:552278/1‑143 (MQ=255) aagcacaaccggcagagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa < 1:52290‑M2/60‑1 (MQ=255) atcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAt < 2:618836‑M2/61‑1 (MQ=255) ccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgccttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaacgt > 1:306929‑M2/76‑141 (MQ=255) cggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcatagagtgttgctcattctcccaaaccaaCGTTTATGAGAATGA‑CGAAATAACACGCAAATGGCATCCGTCCAGCGTTTACAAGGGGGAGTTAACATg > 2:58545‑M2/75‑143 (MQ=255) tagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAt < 2:707125‑M2/74‑1 (MQ=255) ggCGGAGTGGCTGAAGGCCACGGAACCGTGACCCCAACTTGTAATGCAGAGCCTGCTCCCAAACCAACGTTTATACAAATAA‑AGAAATAATAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTg < 1:396060/143‑1 (MQ=255) gctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAATATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTg < 1:457446‑M2/76‑1 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGCACTAACAACCAAATGGCATCATTCCGGCTTTTACCAGACGACTGGAACATGCTTAttgcc > 2:173478‑M2/66‑141 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc > 2:434241‑M2/66‑143 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctaccaaacaaaCGATTATGAAAATGA‑AGAAATAACAAGCAAATGGCACCATTCCTGCTTTTACCAGGGGGATTCACAATGCTTAttgac > 2:341992‑M2/66‑141 (MQ=255) atgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATCTAACATGCGTActggat > 2:462881‑M2/65‑141 (MQ=255) cggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATACCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcg > 1:326597‑M2/58‑143 (MQ=255) tgcgtcctaaggtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGt < 1:649585‑M2/89‑1 (MQ=255) cgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAt > 2:191282‑M2/53‑143 (MQ=255) cctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCGTTTACCAGGGGGATTTAACATGCTTATTGGCTCTGTGCGagtctccg > 2:451822‑M2/50‑141 (MQ=255) ctaatgtggccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGCGATTTAACATGCTTATTGGCTATGTACGCGTATcaac < 2:589266‑M2/95‑1 (MQ=255) aatgtagccgttgctgcattgagttttgctccttctcccaaaccacCGTTTATGACAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACCCGAAtcaacac > 2:632029‑M2/47‑142 (MQ=255) agccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 1:466558‑M2/102‑1 (MQ=255) ccgttgctgtattgagttgtgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa < 2:585441‑M2/104‑1 (MQ=255) ccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa > 1:594418‑M2/40‑143 (MQ=255) ccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAATTAACATGCTTATTGGCTATGTACGCGGATCAAAAAATGACCa > 2:250954‑M2/40‑143 (MQ=255) gctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACAAGGGGAATTTAACATGCTTATTGGCTATGTACACGTATCAAGAAATAACCAGAaca > 2:434090‑M2/35‑143 (MQ=255) tgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGACcaca > 1:147213‑M2/33‑143 (MQ=255) aTGCAGAGCCTTCTCCCAAACCAACGGGAAT‑ATAATAATTTAAATAACAAGCAAATGGCATCATTCATGGTTTTAGCTAAAAATGATGACATGCTTATTGGCTATTTTCGCGTTTCGACAAAGGACCATAACACAGATCTACa > 2:651497/1‑143 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCTTATCAACAAATGACCAGAACACAGATCTACAACGTaa > 1:663563‑M2/19‑143 (MQ=255) tcccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATCACCAGAACACAGCTCTACAACGTAATGCGCTg > 2:346764‑M2/12‑143 (MQ=255) cccaaaccaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTACCATGCTTATTGACTATGTACGCGTATCCACAAATGCCCAGAACACAGATCTACCACgtaatgctccga > 1:856523‑M2/11‑138 (MQ=255) accaaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACtgt < 1:179286‑M2/138‑1 (MQ=255) caaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGAATCAACAAATGACCAGAACACAGATCTACAACGtagtgagctgagctcggc > 2:615863‑M2/4‑139 (MQ=255) aaCGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCAGTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCa < 1:375970‑M2/141‑1 (MQ=255) | GGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGA‑AGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA > NC_000913/1209480‑1209759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |