| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,277,509 | A→G | 14.6% | E58G (GAG→GGG) | yhaV → | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,277,509 | 0 | A | G | 14.6% | 188.0 / 2.2 | 80 | E58G (GAG→GGG) | yhaV | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system |
| Reads supporting (aligned to +/- strand): ref base A (22/45); new base G (7/6); total (29/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.08e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACAAGGAAAGAAACTTGTCGCTGGCATGGACGTCAACATTGATGATGAGATTGGCGACGACGAATAATGGATTTTCCACAAAGGG‑TTAATGGT‑TGGGCGCTATATGCTCATCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAA > NC_000913/3277271‑3277742 | acaaGGAAAAAAACTTGTCGCTGGCATGGACGTCAACATTGTTGATGGGTTTGGGGACGACGAATAAGGGATTTTCCACAAAGGT‑TTAATGGT‑TGGGCGCTATATGCTCATCCCTGTTTTC‑AGGAAACCTACGACGTTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTgagga < 1:418140/239‑1 (MQ=255) aagggAAAGAAACTTGGCGTTGGAATGGACGTCAACATGTATGATGATTTTGGCGACGACGAATAATGGATTTCCCACAAAGGC‑TTAATGGT‑TGGGCATTATATCCTAACCCCTTTTTCA‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGAACCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTgaggag < 1:955974/236‑1 (MQ=255) ggCATGGACGTCAACATTGATGATGAGATTGGCGACGACGAATAATGGATTTTCCACAAAGGG‑TTAATGGT‑TGGGCGCTATATGCTCATCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAATCCATCAAAGGATTTAGGAGGATATACCGGGCAATCcatca > 1:47776/1‑239 (MQ=255) tGGACGTCAACATTGATGATGAGATTTGCGACGACGAATAATGGATTTTCCACAAAGGG‑TTAATGGT‑TGGGCGCTATATGCTCATCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCAtcatca < 1:804245/238‑1 (MQ=255) aaagagacaggatgaGATTGGCGACGACGAATAAGGGATTTTCCAAAAGGGG‑TTAAGGGT‑TGGGCCCTAAAGGCTCATCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑Att < 1:414169/229‑1 (MQ=255) gggttGGGGAGGACGATTAAGTGATTTTCCACAAAGGT‑TTAATGGT‑TGGGCCCTATGTGCTCATCCCTTTTTTC‑AGGAAACCTACGACGTTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAAAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAg < 1:693653/235‑1 (MQ=255) tGGCGACGACGAATAATGGATTTTCCACAAAGGG‑TTAATGGT‑TGGGCGCTATATGCTCATCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCCCAAAGTTATTGGCGGTAGTCCCTAAAAAGATTGAGGAGGCTATCACGGGCAATCCACCATCACCGCC‑ATTCCGTCATGGCAAGACGtt > 1:772907/1‑239 (MQ=255) tGGCGACGACGAATAATGGATTTTCCACAAAGGG‑TTAATGGT‑TGGGCGCTATATGCTCATCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGGGATTGAGGAGCATATCACGGTCAAACCATAATCACCCGC‑ATTCCGTCATGGCCAGTCggt > 1:696416/1‑237 (MQ=255) tGGCGACGACGAATAATGGATTTTCCACAAAGGG‑TTAATGGT‑TGGGCGCTATATGCTCATCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGACCATAAAAGGATTGAGGGGCATATCACGGGCAATACCTCATCACCAGC‑ATTCCGGCCAGGCaaagactt > 1:51602/1‑233 (MQ=255) cgacgacgaATAATGGATTTTCCACAAAGGG‑TTAATGGT‑TGGGCGCTATATGCTCATCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAAAGATTTAGGGGCATATCACGGGTAAACCCACATCACCCGCAATTCGGTCA‑GGCAAGtgagtag > 1:34176/1‑232 (MQ=255) gacgaATAATGGATTTTCCACAAAGGG‑TTAATGGT‑TGGGCGCTATATGCTCATCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCCTAAAGTGATTGAGGGGGCAATCACGGCCAAACCCGCAACACCGGC‑ATTTCCCCATGGCAAATGGTTAGGcctt > 1:817670/1‑236 (MQ=255) gacaaATAATGGATTTCCCACAAGGGG‑TTAATGGT‑TGGGGGTTATATGCTCACCCTTTTTTAC‑AGAAAACCTACGCGGTTTTAGTGGCCGAAGTCGGGACATTAAAGGAAAAAGATCCTGAAAATTATC‑AGAAAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGctct < 1:502701/239‑1 (MQ=255) acgaATAATGGATTTTCCACAAAGGG‑TTAATGGT‑TGGGCGCTATATGCTCATCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGGGATTTAGGGGCAAATACCGGTCAATCCATCCTCAACGGC‑CTTCCGTCATGGCAAGTCCTTTgggcctg > 1:262948/1‑234 (MQ=255) aataagGGATTTTCCAGAAAGGT‑TTAAGGGT‑GGGGCTGTATATGCGTATCACTGTTTGC‑AGGAACCCTCCGACACTTTAGTCGCCAAAGCCGAGACATTAAAGGGAAAGGACCGAAAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTAGTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGa < 1:43421/239‑1 (MQ=255) attatgttttttCCA‑AAAAGG‑TTTATGGTGTGTGCGCTATGTGCCCATCCTTTTTTCC‑GGGAACCCTGCGTCGCTTTAGTGGCCGAAGTCTATACATTAAAGGGAAAAGATCCTGAAAATAAGC‑AGAAAAACGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGa < 2:610958/230‑1 (MQ=255) ataatGGATTTTCCAAAAAGGG‑TTAATGGT‑TGGGCGCTATATGCCCATCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTGCCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAAAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGa < 1:970801/238‑1 (MQ=255) aatatGGTTTTTCCAAAAAGGGTTTAAGGGT‑TGGGCGTTATGTGCTCATCCCTGTTTCC‑AGGAAACCCACGCCGTTTTAGTTGCCGAAGTGGAAAATATAAAGGGAAAAGACCCGAAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGa < 2:614479/236‑1 (MQ=255) tttCCACAAAGGG‑TTAATGGT‑TGGGCGCTATATGCTCATCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAATGATTTAGGAGCATATCACGGGCAATCCCTCTTCCCCGGC‑CTTCCGTCATGGCAAGTCGTTAGGTGCCGGGGaaaaaaaaaa > 1:532005/1‑237 (MQ=255) ttccaacaAGGGT‑TTAATGTT‑GGGGCTCTATATGCCCACCCTTTTTTAC‑AGGAACCCTCGCACGTTTTAGTTGCAAAAGCCGAGACATAAAAGGGAAAAGCTCCGAAAAATTAAA‑AGAAAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATGCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGa < 2:34176/234‑1 (MQ=255) aaGGG‑TTAATGGT‑TGGGCGCTATATGCTCATCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCCTAAAGTGGTTTGGGGGGATATCACGGGCAATCCCACATTACCCGC‑ATTCCGTCATGGCAAGTGGTTAGGGCCTTGGGAAAAAAAAAACTGGTCAc > 1:498872/1‑239 (MQ=255) gggtGGGCGTTATAAGCTCATCCCTTTTTAC‑AGGAACCCTCCGCTCTTTTAGTTGCCGAAGTCAAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAATTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAAtt < 1:841365/236‑1 (MQ=255) gtgtgcccttttatCCTCAACCCGGTTTAC‑AGAAAACCTACGCAGCTTTAGTTGCCGAAGTCGAAACATTAAAGGGAAAAGATCCTGAAAATCATC‑AGAGAAAGTCCGCCCCAAAGTTAGTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAAtt < 1:157594/227‑1 (MQ=255) gtgttattTGCTCA‑CCCTGTTTTCAAGGAACCTTCCGACGTTTTAGTTGCCGAATGCGAGAAATTAAAGGGAAAGTACTCGAAAATTTATA‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATTACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTg < 1:513646/234‑1 (MQ=255) tttttgcttctCCCTGTTTGT‑AGAAAACCTACGACGTTTGAGGTGCCAAAGTAGACACATTAAAGGGAAAATATCCTAAAAATTAGA‑AAAAAAAAGCCGCCACAAAGTTATTGGCGGTAGTTCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGt < 2:934850/229‑1 (MQ=255) tataTGCTCATCCCTGTTTGC‑AGGAATCCTACGACGCTTTAGTTGCCGAAGACGAGACATTAAGGGAAAAAGATCCTGAAAATTAGG‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGt < 1:340337/239‑1 (MQ=255) tatGCTCATCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCCTAAAAGGATTTAGGAGCATATCCCGGTCAAACCATCATCAACCGC‑ATTCCCTCCTGGCCAATCGTTAGGGCCTGGGGAAAATAAAAACTGGTCACGGGGAAAATTTTGTGCTgtg > 1:480707/1‑235 (MQ=255) tCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAATGATTTAGGAGCATATCACGGGCCATCCATCATCACCCGC‑ATTCCCTCATGGCCAGTCGTTAGGGTCTGGGGAAAATAAAAACTGGTCCCGGGTAAAAATTGGTGCTGGTCGTTATCg > 1:756170/1‑237 (MQ=255) tCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAATCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGGTAGGCTCTGGGAAAAATAAAGACTTGACACGGGGAAAATTTGGGGATGGGCGGTATTGt > 1:854872/1‑238 (MQ=255) cccTGTTTTC‑AGGAAACCTACGGCCTTTTAGTTGCAGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAAAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCg < 1:851130/236‑1 (MQ=255) aGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTGCATAAAATGATTGAGGAGCACATCAAGGTGCATCCCCCAGCCCCGGC‑ATTCCGTCTTGGCAAATGGTTAGGGTCTGGGCAAAAAAAAAAATCGGCCCGGGGAAAAATTGGTGGGGGTGGTTTTCGTCTCTTCttt > 2:851130/1‑236 (MQ=255) aCCTACGTCGTTTTATTTGCCGATGTCGAGACATTAAGGTAAAAAGCTCATGAAAATTCAA‑AAAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTAAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAg < 2:265001/239‑1 (MQ=255) aCCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAAAGATTGAGGGGCCTATCACGGTCCAACCCTCATCACCGGC‑ATTCCGTCATTGCACATGGTTTGGCTCTGGGGAAAATAAAAACTGGTCCCGGGGAAAATTTTGTGCTGGTCGTTATCGTCTCTTTTTTCTTtttat > 1:595697/1‑238 (MQ=255) tACGAGGCTTAGGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑GGAAAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCGATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGa < 1:340188/239‑1 (MQ=255) gCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCa < 1:483727/148‑1 (MQ=255) ttATTTGCCGAAAGCGAACAATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAgaga < 1:386419/238‑1 (MQ=255) ttGCCAAAGTAGAGACATTAAAGGGAAAAGATCAGGAAAATTATA‑AGAAAAATGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGt < 1:318995/238‑1 (MQ=255) tGCCGAAGTCGAGACATTAAAGGGAAAAGCTCCGAAAATTTATA‑AGAAAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGtca < 1:39937/239‑1 (MQ=255) gcaaaaGTCGACACTATAAGGGAAAAAGATCCTGAAAATTAAC‑AAAAAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGtcat < 2:928017/235‑1 (MQ=255) gCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCCTAAAATGATTGGGGAGCAAATCCCGGTCAATTCATACTCACCCGC‑ATTCCGTCATGGCACATCGTTAAGCGCTGGGAAAAATAAAGACTGGACCCGGGTCAAATTTGGTGATGGTCGTTATACTCTCTCTTTTCGTTTTAGTGACAAAGAGAAAGtcat > 1:455312/1‑239 (MQ=255) ccGAAGGCGAGACATTAAAGGAAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTta < 1:875335/217‑1 (MQ=255) atgtgggaaCATAAAAGGGAAAAATTTCTGAAATTTAAC‑AGAAAAAGGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCAtt < 2:498872/231‑1 (MQ=255) aTTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGGCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCCCTGGGAAAAAAAAAGACTGGTCCCGGGGAAAATTTGGTGCTGGTCGTTATTGGCTCTTCTTTCGTTTTTGGGAAAAAGAGAAAGGCATCATTCTtggatgga > 1:141665/1‑239 (MQ=255) aaaGGGAAAAGCTCCTGAAAATTATC‑AGAAAAAAGCCGCCACAAAGGTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCAGATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGa < 1:121005/239‑1 (MQ=255) aaaGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAAAGATTGAGGAGCATATCACGGTCAAAACATCATCACCGGC‑ATTCCGTCATGGCAAGACGTTAGGCTTTGGGAAAAATAAAAACAGGTGACGGGGCAAAATTTGTGCTGGTCGTTATTGTCTCTTTTTTCGTTTTAGGGAAAAAAAGAAAGGCATAATTTTTGGGTGGGTGa > 1:982528/1‑239 (MQ=255) aaaGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCAATTAAAAGAATGAGGGGCCAATACCGGTCAATCCATCATCAACCGC‑ATTTCGTCATGGGGAGACGTATGGGCCTCGGGACAATAAAAACAGGTCACCGGTACACATTGTGACTGGTAGTTTACGTCACCTTCTTCTTTTTATGGAAAAAAAGAAAGCGATCATTCTAggagggtgag > 2:10785/1‑235 (MQ=255) aaaaaTATCCGTAAAATTATA‑AGAAAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGAATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGGTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCCCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGa < 2:854872/237‑1 (MQ=255) aaaaaaGCCTGAAAAATTTAAAGAAAAAACCCCCCACAAAGGTTTTGGCGGTTGTCCCTAAAGTGATTGAGGGGCATATCACGGTCAATCCAACATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGa < 2:528439/238‑1 (MQ=255) aaaaGATCCTGAAAATTATA‑AGAAAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGa < 1:905062/237‑1 (MQ=255) aaaGATCCTGAGAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGCGATTGAGGAGGATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTGGTTAGGCGCTGGGGAAAATAAAGAACGGGCCCGGGGAAAAATTTGGGACGGGCGGTATCGCATCTTTTTTTTGTATAGGGAAAAAAAAAAAAAGAATATTCTGggaggggagagaagaga > 2:575203/1‑228 (MQ=255) tCCTGAAAATTACA‑AGAGAAAGGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCAGCAGCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAaca < 1:860739/239‑1 (MQ=255) ctaaaaaTTATC‑AGAGAAAGGCCGCCACAAAGTTAGTGGCGGTAGGCCATAAAGTGATTGAGGAGAATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACAct < 1:1024166/236‑1 (MQ=255) gAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCcatcat < 2:929107/85‑1 (MQ=255) gAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAATGATTGAGGAGCATATCACGGTCAATCcatcat > 1:929107/1‑85 (MQ=255) agaaAAAAGCCGCCCAAAAGTTATTGGCGGTAGTCCATAAAGTGATGGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTAc < 2:756170/239‑1 (MQ=255) agaAAAGCCGCCACAAAGTTATTGGCGGTAGTCCCTAAAATGATTGAGGAGCATATCACGGGCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGAATGGTCACGGGGAAAAATTTGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTTGGGTGGATGAACGATGAAAAAACACCTCGAACCCACgg > 1:371216/1‑239 (MQ=255) cccaaaaGTTTTTTGGGGTATTCCATAAATTGATTGATGGGTATTTCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACa < 2:51602/235‑1 (MQ=255) cccaaaaGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACa < 2:262948/235‑1 (MQ=255) ccACAAAGTTATTGGCGTGTGTCCATAAAGTGAGTGAGGGGCCTATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGGCTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACa < 2:597068/239‑1 (MQ=255) cacaAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGGCAATCCAGCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACGGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACa < 1:1075032/238‑1 (MQ=255) caaaaGTTTTTGGGGGTAGTCCATAAAGTGTTTGAGGGGCATATCCCGGGTAAACCAACATCACCGGC‑ATGCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGa < 2:595697/237‑1 (MQ=255) aaGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGc < 1:474564/239‑1 (MQ=255) aGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGtca < 1:173375/177‑1 (MQ=255) ttATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTg < 1:478991/127‑1 (MQ=255) ttAATGGCGGTATTCCATAAAGTGAGTGAGGAGCATATCACGGTCAATCCAGCATCACCGGC‑AGTCCGTCATGGCAAGTCCTTAGGCTCAGGGAAAAATAAAGACTGGTCACGGGTAAAATTGGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTAc < 1:205988/219‑1 (MQ=255) tATTGGCCGTAGTCCATGAAGTGATTGATGAACATATCACGGTCAATCCCACATCACCTGC‑ATTCAGTCATGGCAGGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTGGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCAATCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCt < 1:983536/237‑1 (MQ=255) aTTGGAGGTAGGCCAAAAAGTGATTGAGGAGCATATCCCGGTCAATCCATCATCAACGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCtata < 2:772907/239‑1 (MQ=255) ggTAGGCCATAAAGTGATTGAGGAGCATATCCCGGTCAATCCATCATCCCCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTa < 1:690838/238‑1 (MQ=255) tAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTAtt < 1:381680/238‑1 (MQ=255) tCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATAACGGATTCAGc > 1:869973/1‑239 (MQ=255) ccATAAAGTGTTTGAGGGGCATATCCGGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCa < 2:869973/239‑1 (MQ=255) cATAAAGTGATTGAGGGGCATATGCCGGTCAATCCATCATCCCCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCa < 1:779348/238‑1 (MQ=255) tGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACa < 1:808298/209‑1 (MQ=255) tGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTa > 1:127306/1‑239 (MQ=255) aTTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAACAACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGAATTCAGCAAAATGTTaaa > 1:288665/1‑239 (MQ=255) aTTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTTTGCGCACCTACGGTAAAAAAACa > 2:1027025/1‑207 (MQ=255) aTTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAACCAGATGCCTATACCGCATTCAGCAAAATGTTaaa > 1:963354/1‑239 (MQ=255) aTTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGCATTCAGCAAAATGTTaaa > 1:823326/1‑239 (MQ=255) aTTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGACATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACa < 1:1027025/207‑1 (MQ=255) ttGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCtcttct > 2:70902/1‑123 (MQ=255) ttGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCtcttct < 1:70902/123‑1 (MQ=255) ttGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTaaaa > 1:197757/1‑239 (MQ=255) tGAGGAGCATATCACGGTCAAACCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTaaaaa < 1:134698/239‑1 (MQ=255) | ACAAGGAAAGAAACTTGTCGCTGGCATGGACGTCAACATTGATGATGAGATTGGCGACGACGAATAATGGATTTTCCACAAAGGG‑TTAATGGT‑TGGGCGCTATATGCTCATCCCTGTTTTC‑AGGAAACCTACGACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATC‑AGAGAAAAGCCGCCACAAAGTTATTGGCGGTAGTCCATAAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGC‑ATTCCGTCATGGCAAGTCGTTAGGCTCTGGGAAAAATAAAGACTGGTCACGGGTAAAATTTGGTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAA > NC_000913/3277271‑3277742 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |