Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 3,388,176 | A→G | 14.1% | S5P (TCC→CCC) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,388,176 | 0 | A | G | 14.1% | 190.9 / 3.8 | 77 | S5P (TCC→CCC) | aaeB | p‑hydroxybenzoic acid efflux system component |
Reads supporting (aligned to +/- strand): ref base A (13/51); new base G (8/4); total (22/55) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.50e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 |
CCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCAAGGTTAGAGTCTATAGTCGCCATCCCTTTGTCGTCACGCGT > NC_000913/3387947‑3388412 | ccGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATa < 1:474482/237‑1 (MQ=255) cGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCCG‑GTTTCCCGCCAAACGCAAATTGT‑GGGTTGCA‑AT‑G‑GGGAAAAAAcc > 1:70298/1‑238 (MQ=255) cGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGGCGCCCG‑GTTTACCGCCAAGCGCAAATGTTGGGTTAG‑A‑AT‑C‑GGGACAATAccc > 1:1068908/1‑239 (MQ=255) gaaaTACAGCCAATAAATGTTCCGGTGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCCCCTCCCGCAGCAAAGGCCGGACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAt < 2:285007/237‑1 (MQ=255) aaaTACAGCCAATAAATGGGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAt < 1:525686/237‑1 (MQ=255) accagcAATAAATGGCCCAATGATGCGCAAAACGCCACGATAGCTAATAGCGCCAGAATCCCGTTCACCCCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGa < 2:728986/234‑1 (MQ=255) tAAAGGTGCCGATGATGCGCAAAAAGCCACGTGAGCGAATAGCGCCAAAATTCGGTTCACCGCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCaa < 2:905185/239‑1 (MQ=255) aTGGGCCTAGGATGCGCAAAAAGCCACGATAGCGAATGGCCCCAGAATCCGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACt < 2:1025499/239‑1 (MQ=255) gCCGATGATGCCCAAAAAGCCAGGAGAGCGAATAGCCCCAGAAAACGGTTCACCTCCCGCGGCAAAGGCCGTACCGGCGGCAACAAACGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACg < 2:323069/239‑1 (MQ=255) ccGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGCACAATGGTGATCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCC‑AT‑G‑GAGAAAAGACCCAT‑C‑GTGACTAACCAAAATCaacc > 1:125249/1‑236 (MQ=255) atgatgCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCCGCCGGGAGTGAAAGCCAACAAACAGCGCCAGGACAATGGCGGGCCCCCG‑TTTTATCCCCAAAAGGAGATGTT‑GGTGTGCA‑AT‑G‑GGGGAAAAACACAC‑A‑CCGATTAACCaaaaacccccaag > 2:138442/1‑229 (MQ=255) cAAAAAGCCACCAGAGCGAATAGCGCCAGAATCCGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGc < 2:520678/239‑1 (MQ=255) aaagGCCACGGAAGCGAAGGGCCCCAAAATACGGTTCGCCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCTGTACCGCCCAGCGTGGCGTTTCCGGCTGGAAGTGAAAGCCAATAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCa < 2:309397/239‑1 (MQ=255) aaaaGCCAAGGAAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCa < 1:545308/239‑1 (MQ=255) gatgggtaaTAGCCCCAGAATGCGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGACGCTGTCAGTACCGGCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGga < 1:944194/232‑1 (MQ=255) gATTGCGAACAGCCCCAGAATCCCGTTCCCCTCCCGCAGCAAAGGCCGTCCCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGga < 2:355386/239‑1 (MQ=255) cGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGGCGCCCGATTTTCCCCCAACCCGAAAAT‑TT‑GGTTTGCG‑AT‑G‑GGGAAAAAACCCAC‑C‑GGGGTTAACAAAAATCACCCAGGCGAAGGGGCATTTTACgggaaaaa > 2:811268/1‑233 (MQ=255) cGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGGCGCCAG‑TTTTTTCCCCCAAAGAATATGTT‑GGTTAGCACAT‑G‑G‑GAAAATACCCCA‑C‑TTGATTTACCAAACTCCCGCAGGGGATGGGCCACTTTACGGAAGAAc > 1:143474/1‑239 (MQ=255) cgcCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGGGGCCTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTGACCAG‑TTTTATCGCCAACGGGAAATGAT‑TGTTAGAA‑ATAGTGAGAATAAACCTCT‑C‑GTG‑TAAACCAAACCCACACA‑GAGACGGGCCCATTTATGgaaaaaaacaaaac > 2:99040/1‑231 (MQ=255) ccAGAATACGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCCG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GGGAAAATACCCAT‑C‑GGGATTAACCCAACTCAACCAGGCGAGTGGGCATTTTTCGGAAGAAAGAAACCTg > 1:638336/1‑238 (MQ=255) tccGGTTCCCCTCCCGCAGGAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGACAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTtcg < 1:752009/237‑1 (MQ=255) cACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCCG‑GTTTACCCCAAAACGAATAAGTT‑GGGTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCCAAACCCCCCAAGCGATGGGCCATTTTTCGGAAGAAAGAAACCTGGCTTTCTTcgcggt > 1:744543/1‑237 (MQ=255) ccaAAGGCCCGACCGGGGCAAACAAGCGCCGCGTTCAGTACCGCCCAGGGGGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCa < 2:293681/238‑1 (MQ=255) ccGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGac < 1:709126/237‑1 (MQ=255) ccGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGac < 1:916284/237‑1 (MQ=255) ccGTACCGGCGGCAAAAATCGCCCCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGac < 1:486635/237‑1 (MQ=255) cGTCCCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGaccac < 1:872682/239‑1 (MQ=255) cGTCCCGGCGGCAACAATCGCCGCTGGCAGGACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGaccac < 1:493265/239‑1 (MQ=255) cGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGTAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGaccac < 1:731711/239‑1 (MQ=255) cccGGGGGAAACAATCGCCGCTGGCAGTCCCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACcaccac < 2:129507/238‑1 (MQ=255) cccGGCGGCAACAATCGGCGCTGTCAGTACCGCCCAGCGTGGCGTTGCCAGCTGGAAGTTAAAGCCAACAAACAGCGGCAGGACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACcaccac < 2:166017/238‑1 (MQ=255) aCCGGGGGCAACCAACGCCGGTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACcaccac < 1:994842/239‑1 (MQ=255) aCCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACcaccac < 1:22940/239‑1 (MQ=255) ccGGCGGCAACAATCGCCGCTGTCAGTTCCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACcaccac < 1:907201/238‑1 (MQ=255) ccgctgctcgTACCCCCCAGCGTGTGGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGGGCCAGTACAATGGCGGGCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCg < 2:492368/230‑1 (MQ=255) acagtGTCAGTCCCGCCCCGGGTGGCGTTTCCCGCTGGAAGTGAACGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGccc < 2:364/234‑1 (MQ=255) ggcAGTACCGCCCGGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGGCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGc < 1:203800/237‑1 (MQ=255) tACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACcaccac < 1:1063685/212‑1 (MQ=255) cGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGacc < 1:820796/204‑1 (MQ=255) cccAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGGTAGCA‑AT‑G‑GGGAAAATACCCAT‑C‑GGGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCCATGACCACCACTGTAGCAATGGTGCCCCCAGGcccagttcgt > 1:364/1‑230 (MQ=255) cccAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGGT‑GGGTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTtct < 2:516745/239‑1 (MQ=255) ccAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑GTTTACCGCAAAACGAATATGTT‑GGGTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAAACAAACTCCAGCAAGCGGGGGGCCCTTTTTAGGAAGAAACAACCCTGGCCTTTGTCCCGAACTTGTTTT‑CCCTGGGCCCCCACTTCAACGAGGGTGCCCCCAGCCCAGATGGtctc > 2:324411/1‑239 (MQ=255) aGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GGGAAAAAACCCAt > 2:965512/1‑112 (MQ=255) aGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAt < 1:965512/112‑1 (MQ=255) ccAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑CTTTACCCCAAAGCGAATATGTT‑GGTTAGGC‑AT‑T‑GAGAAAATAACCATCC‑GTG‑TTAACCACACCCACGCCGGCGATGGGCCCTTTTTCGGCAAAGCGAATCCCTGCGTTCTTCTCAACCTTGTTTG‑CCTGTGCCCACCACCCAAACAGGGGTTCCCGCCGCGCAGAAGTTCCCTTGCCGGtttgctg > 2:641788/1‑234 (MQ=255) gCTGGAAGTGAAAGCCAACAAACAGCGCCAGTCCAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCCCGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGAc < 1:251390/239‑1 (MQ=255) gAAAACCAACAAACCGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACTGCAAAGCGAATATGCT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGTGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACg < 1:1074152/237‑1 (MQ=255) aaacaGCGCCCTTACAATGGGGGGCGCCAG‑TTTTACCTCAAAGCGAATATGTG‑GGTTAGCA‑AT‑G‑GAAAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCCCCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑Cg < 2:629506/239‑1 (MQ=255) aaacaGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑Cg < 1:138442/239‑1 (MQ=255) cccAGTACAATGGCGGTCGCCAG‑TTTTAACGCAAAGGGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCCT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTgcg < 1:1081066/236‑1 (MQ=255) tACAATGGCGGTCGCCAG‑TTTTTCCCCAAAACGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCCAACTCACGCCGGCGATGGGCCATTTTACGGGAGAACGAATACTGGCTTTCGTCGCACGCTTTTTTG‑CCCGGGAACCCCCCCTTTGCAGGGGTGGCCCCCGGCCCAATGTTCTCTTTCGGGTTTTGCGAGCCGAAAGCGACCCGGAAAAGCGTTgccgacac > 2:910544/1‑233 (MQ=255) aCAATGGGGGTCGCCAG‑GTTTACCGAAAAGCGAAAAGTTT‑GGTTAGCA‑AT‑G‑GGGAAAATCCCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGc < 2:614655/239‑1 (MQ=255) cAATGGCGGTGGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AG‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCa < 1:288642/239‑1 (MQ=255) cAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGGT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCa < 1:641788/239‑1 (MQ=255) cAAAGGCGGTCCCCCA‑GTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATCCCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCa < 1:749217/239‑1 (MQ=255) aTGGCGGGAGCAAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATCCCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCAcc < 1:715316/239‑1 (MQ=255) gTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCCTTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCCGATGTTCTCTTTCTGGTTGT‑CGAGACGAATACGAACCGGGACA‑CGTTTGGCAAGACGCAccccctca > 2:222346/1‑234 (MQ=255) gTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGATCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCa > 1:148484/1‑239 (MQ=255) gTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGGGACGAATACGCACCGGAAAA‑CCGTGCGCAAGACGCACCCATTCa > 1:964215/1‑239 (MQ=255) gTCGCCAG‑GTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GGGAAAATACCCAT‑C‑GTGATTAACCAAAATCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTGCCCAGGGA‑CACCCCAGTAGCAGTGGTTCCCGCGGGCCACAGTTTCTCTTTGTGGTTTT‑GCGGGGGAATACGAAACCGGACA‑CGTTGTGGAAGACGAGCCCaagca > 2:974534/1‑235 (MQ=255) gcGCCAG‑TTTTACCCGAAAGCGAATCTGTT‑GGGTAGAA‑AT‑G‑GAGAAAATTCCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTCACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCa < 1:525353/237‑1 (MQ=255) ctg‑TTTTGCCGCAAAGCGAATATTGT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAG‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCAAGGtt < 2:1003833/237‑1 (MQ=255) ccg‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GGTATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTTGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCAAGGtt < 2:226783/237‑1 (MQ=255) cAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAG‑C‑GTGATTAACCAAACTCTCGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCAAGGt < 1:1003603/238‑1 (MQ=255) cAG‑TTTTACCCCAAAGCAAAATTGTT‑GGTTAGGA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCAAGGtt < 2:785235/239‑1 (MQ=255) g‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGAccacca < 2:281568/140‑1 (MQ=255) g‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGAccacca > 1:281568/1‑140 (MQ=255) tttCCCGCAAAGCGAATATGTT‑GGGTAGGA‑AT‑G‑GAGAAAATTCCCAG‑C‑GTGATTAACCAAACCCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCAAGGTTa < 1:112126/236‑1 (MQ=255) tttACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCAAGGTTa < 1:699562/236‑1 (MQ=255) tttACCGCAAAGCGAATATGGT‑GGGTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGGGACCGCCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCAAGGTTa < 1:50227/236‑1 (MQ=255) gCAAAGGGAATATGTT‑TGTTGGAA‑AT‑G‑GGAAAAATCCCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAAGCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCAAGGTTAGAGTCtata < 2:143474/239‑1 (MQ=255) ggTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGCCGAATACGAACCGGAACA‑CGTTGCGCAGGACGCACCCATTACAGGTTAGAGTCTAGAGTCCCCAACCCTTTg > 1:1055980/1‑238 (MQ=255) ggTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCAAGGTTAGAGTCTATAGTCGCCATCCCTTTg > 1:17277/1‑238 (MQ=255) tgCA‑AT‑G‑GGGAAAATACCCCG‑CGGTGA‑TAATCAAGCTCCAGCGGGGTGTGGGCCATTTTACGGAAGAACGAATCCTGGCTTGCGTCGCGATCTTGTTTG‑CCAGTGACCACCCCTGTTGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCAAGGTTAGAGTCTATAGTCGCCATCCCTTTgtcgt < 2:929784/237‑1 (MQ=255) aT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGCCCAGAGTTTCTCTTGCTGGATGT‑CGAGACGAGTAGCATCCGGAAAC‑CGTTGCGCAAGCCGCCCCCTTTCAAGGTTATAGACCATAGACCGAACCCCTTTgtcggacccc > 2:763497/1‑233 (MQ=255) t‑G‑GGGAAAATGCCCAG‑T‑GTGATTAACCAAACTCACGCGGGGGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCAAGGTTAGAGTCTATAGTCGCCATCCCTTTGTCGTCAcgcg < 2:223231/239‑1 (MQ=255) t‑G‑GAGAAAATTCCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCAAGGTTAGAGTCTATAGTCGCCATCCCTTTGTCGTCAcgcg < 1:324411/239‑1 (MQ=255) gagaAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCAAGGTTAGAGTCTATAGTCGCCATCCCTTTGTCGTCACGCGt > 2:200369/1‑238 (MQ=255) | CCGGCAATACAGCCAATAAATGTGCCGATGATGCGCAAAAAGCCACGATAGCGAATAGCGCCAGAATACGGTTCACCTCCCGCAGCAAAGGCCGTACCGGCGGCAACAATCGCCGCTGTCAGTACCGCCCAGCGTGGCGTTTCCAGCTGGAAGTGAAAGCCAACAAACAGCGCCAGTACAATGGCGGTCGCCAG‑TTTTACCGCAAAGCGAATATGTT‑GGTTAGCA‑AT‑G‑GAGAAAATACCCAT‑C‑GTGATTAACCAAACTCACGCAGGCGATGGGCCATTTTACGGAAGAACGAATCCTGGCTTTCGTCGCGATCTTGTTTG‑CCAGTGACCACCACTGTAGCAGTGGTGCCCGCAGGCCAGATGTTCTCTTGCTGGTTGT‑CGAGACGAATACGAACCGGAACA‑CGTTGCGCAAGACGCACCCATTCAAGGTTAGAGTCTATAGTCGCCATCCCTTTGTCGTCACGCGT > NC_000913/3387947‑3388412 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |