Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,661,665 C→G 13.4% R418G (CGT→GGT)  mdtF → anaerobic multidrug efflux transporter, ArcA‑regulated

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,661,6650CG13.4% 197.7 / 3.1 78R418G (CGT→GGT) mdtFanaerobic multidrug efflux transporter, ArcA‑regulated
Reads supporting (aligned to +/- strand):  ref base C (38/28);  new base G (8/4);  total (46/32)
Fisher's exact test for biased strand distribution p-value = 7.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AAGTTTTCAAAACACTGGTTGAGGCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCAT  >  NC_000913/3661429‑3661900
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                             
aaGTTTTCAAAACCCTGGTTGAGGCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCg                                                                                                                                                                                                                                              <  1:8560/238‑1 (MQ=255)
    tttCAAAATTCTGGTTGAGGGCTTGTACCTATTCTTCCGGGGTATTTTGCTGTTTG‑TGGAAAACTTCCGGTCATCACACATCCGGTCGATTGCCGATACC‑GTGGTGAGTCTAGGGACGTTTGCGATCTTGTGGGTGGGCGGTTGCAACATCAACACGTTTACTATGTTCGGGATGGTGCTGGCGATAGGTTTACTTGTGGAAGACTCCAGCGTGGTGGTGGAGAACTTCGAGCatgacg                                                                                                                                                                                                                                         <  2:194745/239‑4 (MQ=255)
    tttAAAAACCTTGGGTGAGGCTTTCATCCATGGCTTCCTTGGCATGTGTCTGTTTTGTGC‑GAATTTCCGGGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCa                                                                                                                                                                                                                                         <  2:9146/239‑1 (MQ=255)
       taaacctcTGGTTTGGGTTTTCACCCTATTTTTCCGTGTCATGTATCTGTTTT‑GGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTGGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTg                                                                                                                                                                                                                                      <  2:434074/232‑1 (MQ=38)
         aaaCCCTGGTTGAGGTTTTCCTCCCTGTTTTCGTGGGTATGGTTCTGTTTG‑TGCAGAATTTCCGTGCCCAAATCATCCCGACGATTGGCG‑TACCGGTGGTTATTCGCGGGACGTTTGCGGTCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCg                                                                                                                                                                                                                                    <  2:989807/239‑1 (MQ=37)
             acTGGTTGAGGCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTCTGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATTACGCCATCGTGGGGGTGGTGAAAGTCGGGCGGGTACTTGCGGGAg                                                                                                                                                                                                                                >  1:952875/1‑239 (MQ=255)
               tGGTTGAGGCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGGGGATGACGCCATCGTGGGGGGGGGGAACGTCGGGCGGGTCATTTGGGAGGAt                                                                                                                                                                                                                              >  1:148455/1‑239 (MQ=255)
                      ggCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGTTAGGGTTACTGGGGGATGCAGCCATCCTGGTGGTGGGGAACGTCGAGGGGGTCATTGGGGAAGAT‑AAGCTa                                                                                                                                                                                                                       >  1:90159/1‑238 (MQ=255)
                      ggCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGGGCTGGCGGTAGGGTTACTGGTGGATGACGCCATCGGGGTGGGGGGGAACGGCGGGGGGGTCATTGCGGAAGAT‑AAGCTa                                                                                                                                                                                                                       >  1:590110/1‑238 (MQ=255)
                      ggCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGGTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGGTAGGGTTACTGGTGGATGACGCCCTCGTGGGGGGGGGGGAGGGCGAGGGGGTCATTGCGGAAGaa‑aaaccac                                                                                                                                                                                                                      >  2:1041376/1‑234 (MQ=255)
                      ggCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGGTTCACCATCAACACGTTGACTATGTTCGGGAGGGTGCTGGCGATAGGGTTACTGGGGGATGACGCCATCGTGGTGGTGGGGAACGTCGAGGGTGTCATTGCGGAAGGT‑AAGCTa                                                                                                                                                                                                                       >  1:796058/1‑238 (MQ=255)
                           tcatcCTAGTCTTCCTGGTCATGTATCTGTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATGGGGTTACTGGTGGATGACGCCATCGTGGTGGGGGGGAACGTCGGGCGTGTCATTGCGGAAGAT‑AAGCTAcc‑gccc                                                                                                                                                                                                                >  1:498230/1‑238 (MQ=255)
                                        ccTGGTCATGTATCTGTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTTACTATGTTCGGGATGGGGCTGGCGATCGGGGTACTGGTGGATGACCCCCTCGTGGGGTGGGAGAACGTCGCGCGGGGCCTTTCGGGAGGT‑AAACTTCC‑CCCcaaggaaggcggcc                                                                                                                                                                                                   >  1:593189/1‑233 (MQ=255)
                                              cATGTATCTGTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGGGGGGAACGTCGAGGGGGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAACGACGCATAAAt                                                                                                                                                                                             >  1:108152/1‑239 (MQ=255)
                                                tGTATCTGTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTTACCATCAACACGGTGGCTTTGTTCGGGATGGTGCTGGCGATCGGGGTACTGGTGGGTGACGCCCTCGTGGTGGTGGGGAACGTCGAGCGGGTCATTTCGGGAGAT‑AAACGAAC‑GCCGAAGGAAAGGAAGCACaaaaag                                                                                                                                                                                           >  2:258982/1‑236 (MQ=255)
                                                 gTATCTGTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTACGATCTTGTCGGCGGTCGGTTTCACCATCAACACGATGACTATGTTCGGGATGGGGCTGGCGGTAGGGTTACTGGTGGATGACGCCATCGTGGGGGTGGAGAACGTCGAGCGTGGACTTGCGGAAGAT‑AAGCTACC‑GCCGAAGGGAGCGACGCATAAATCGa                                                                                                                                                                                          >  1:146049/1‑239 (MQ=255)
                                                  tATGTGTTTT‑TGCAGAATTTCAGTGCCACATTCATGCCGGCGTGTGGCG‑TGCCGGTGGTTATGCTCGGGACGTTGGCGATTTTGCCGGGGGTCGGTTTCACCATCAAGACGTTGACTATGTTCGGGATGGGGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGGGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGAt                                                                                                                                                                                         <  2:291427/239‑1 (MQ=255)
                                                  tATCTGTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGGTTCACCATCCACAAGTTTACTATGTTCGGGGTGGGGCCGGCGGTAGGGGTACTGGGGGATGAAGCCAACGGGGGGGGGGGGAAAGCGGGGGGGGTCCTTGGGGGAGAG‑AAAGTACCGGGGGAAGGAAGGGACGCAaaaacaag                                                                                                                                                                                          >  2:251392/1‑235 (MQ=255)
                                                  tATCTGTTTT‑TGCAGAATTTCCGTGCCACAATCACCCCGGCGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGAt                                                                                                                                                                                         <  1:597364/239‑1 (MQ=255)
                                                      tGTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGGGAACGTCGAGGGTGTCATTGCGG‑AGATAAAGCTACC‑CCCGCAGGAAGCGGCGCATAAAtttgtctct                                                                                                                                                                                     >  1:667258/1‑231 (MQ=39)
                                                       ttttt‑tGCAGAATTTCCGGGCCACAATCATCCCGACGCTTTCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGGT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGc                                                                                                                                                                                    <  1:809692/238‑1 (MQ=255)
                                                       gTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGGCGGTTTCACCATCAACACGTTGGCTTTGTTCGGGATGGTGCTGGGGATAGGGGTACTGGTGGATGACGCCCTCGGGGGGGGGGGGGACGGCGGGGGGGGCATTGCGGGAGATAAAGTCACC‑G‑CGAAGGAAGCGGGCCAAAAAACAATggggg                                                                                                                                                                                    >  2:597384/1‑238 (MQ=255)
                                                            ttggaaaaTTTCCGTGCCACATTTATCCCGACGTTTGGCG‑TACGTGTGGTTATTCTCGGGACGTTTGCGATCTTGTGGGCGGTCGGTTTCCCCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTAATGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGAt                                                                                                                                                                                <  2:1023858/233‑1 (MQ=39)
                                                                                                 ccG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGGTTCACCATCAACACGTTGACTATTTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGGGGTGGGGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGAGCCAACGTGCGCTGGGCGGGATTTCCGTTGGTCTTTc                                                                                                                                            >  1:636018/1‑238 (MQ=255)
                                                                                                   g‑TACCGGTGGTTCTCCTCGGGACGTTGGCGATCTTGTCGGCGGTCGGTTTCACCAGCAACACGTTGACTATGTTCGGGATGGGGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGc                                                                                                                                         <  1:143656/239‑1 (MQ=255)
                                                                                                   g‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGc                                                                                                                                         <  1:258982/239‑1 (MQ=255)
                                                                                                                  tttcGGGACGTTTGCGTTCTTGTCGGCGGTCGGTTTCCCCATCAACCGGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACGGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGa                                                                                                                           <  2:206391/237‑1 (MQ=255)
                                                                                                                  tctgGGGACTTTTGCGATCTGGGCGGCTGTCTGTTTCCCCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCTATAGGGTTACTGGTGGATTACGCCATCGTGGTGGTGGAGAACGTCGAGCGTTTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGa                                                                                                                           <  1:26685/239‑1 (MQ=255)
                                                                                                                  tctcGGGACGTTTGCGATTTTGGCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGa                                                                                                                           <  1:226876/239‑1 (MQ=255)
                                                                                                                    ccGGGACGGTTGGGGTCTTGTCGGGGGTCGGTTTACCCATCAACCCGTTGACTTTGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATg                                                                                                                         <  1:251392/238‑1 (MQ=39)
                                                                                                                     cGGGACGTGTGGGATTTTTGCGGGGGGCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATgg                                                                                                                        <  1:12236/239‑1 (MQ=255)
                                                                                                                        ggcGTTTGCGATTTTGGCGGCGGTCGGTTTCACCATCAACACGTTGACGGTGTTCGGGATGGTGCTGGGGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGcc                                                                                                                      <  1:623384/236‑1 (MQ=255)
                                                                                                                             ttGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATgggg                                                                                                                                                                                     <  1:347527/170‑1 (MQ=255)
                                                                                                                              tGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGGGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGGATTGCCGTTGTTCTTTCCGCAAGGTTTAGGCCGATGGCCTTTATGa                                                                                                               >  1:261742/1‑239 (MQ=255)
                                                                                                                               ggggttttGTCCGCGGTCGGTTTCACCTACAACACGTTGACGAGGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGGGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAg                                                                                                              <  1:376592/233‑1 (MQ=39)
                                                                                                                                  gtCTTGTCGGGGGTCGTTTTCCCCTTCACCATGTTGATTTGTTTGGGGGTGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGGGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCgg                                                                                                           <  2:489752/238‑1 (MQ=255)
                                                                                                                                    cTTGGCGGCGGTCGGTTTCACCAGCAACACGGTGACTAGGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTg                                                                                                         <  1:1034850/239‑1 (MQ=255)
                                                                                                                                     ttGTCGGCGGTCGGTTTCACCATCAAAACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGAAGCCATCGTGGTGGGGGGGAACGTCGGGCGGGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGGAGCGACGCATAAAACGATGGGGCAGAGCCAAAGGGCGCTGGTGGGGTGTGCCGTGGTTTTTTTCCGAGGGTTGTGGCCGAGGGCCTTTTTGGGCGGGGc                                                                                                        >  2:888788/1‑239 (MQ=255)
                                                                                                                                               tcggtTTCACCATCAACACGTTGACTATGTTCGGGGTGGTGCTGGCGGTAGGGTTACTGGTGGGTGACGCCCTCGTGGGGGGGGAGAACGTCGAGCGGGTCATTGCGGAAGAT‑AAGCTACC‑GCCGGAGGAAGCGACGCCTAAATCGTTTGGGCGAATCCCACGGGCGCTGGGGGGGTATGCCGGTGTTTTTTCCCCAGGGTTTATTCCCATGGCCTTTTTTAGGGGGGCAACCGGGgag                                                                                              >  2:65332/1‑239 (MQ=255)
                                                                                                                                                             aaCACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTCCCGTTGTTCTTTCCGCAGTGTTTTTGCCGATGGCCTTTATGAGCGGGGCAACCGGGGGGATCAACCGCCAGt                                                                                 >  2:589152/1‑238 (MQ=255)
                                                                                                                                                                   ttGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGGGCAACCGGGGAGATCTACCGCCAGTTTTCCa                                                                           >  1:973672/1‑238 (MQ=255)
                                                                                                                                                                            ttCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGc                                                                                                                                         <  2:157812/167‑1 (MQ=255)
                                                                                                                                                                            ttCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGc                                                                                                                                         >  1:157812/1‑167 (MQ=255)
                                                                                                                                                                                ggATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGTTGGCCTTTATGAGCGGTGCAACCGGGGAGATTTACCGCCGGTTCTCCATCAcccctgtccct                                                             >  2:209432/1‑229 (MQ=255)
                                                                                                                                                                                ggATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATACGCGTGGCAACCGGGGAGATCCACCGCCAATTGTCCATCACCCTGGTctcc                                                             >  2:456962/1‑239 (MQ=39)
                                                                                                                                                                                    ggTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCTTAAATCGCTGGGGCAGATCCAACGTCGTCGGGTCGGGATTGCCGTTGTTCTTTCCGCAGTGTTAATGCCGATGGCCTTAATGAGCGGTCAACCCGGGGAGATCTACCGCAAGTTTCCCATCACGCTGACttcctc                                                           >  2:244816/1‑237 (MQ=255)
                                                                                                                                                                                    ggTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGAGGGCCTTTATGCGCGTGGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCa                                                         >  1:640506/1‑239 (MQ=255)
                                                                                                                                                                                      tGCTGGCGATCGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTCTTGACGTTGTTCTTTCCGCCGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACGTGGGACATCTACCGCACGTTCTCCTCCACGCTGATCtcctccct                                                        >  2:700162/1‑236 (MQ=255)
                                                                                                                                                                                      tGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGAAGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTCCCGTTGTTCTTTCCCCAGGGTTTATGCCGATGGCCTTTATGGTCGGTGCCACCGGGGGAGTATACCGCCCGTTACCCCTCACCCCGATCTCCCCCagg                                                       >  2:564517/1‑237 (MQ=255)
                                                                                                                                                                                       gcgggCGATGGGGTTCCGGGTGGATGACGCCATCGTGGCGGGGGAAAACGTGGGGCGTTTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGAGGGGGCAGATCCAAGGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCAtg                                                       <  1:726452/235‑1 (MQ=255)
                                                                                                                                                                                          ggCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGTTGGCCTTTATGAGCGGTGCAACCGGGGAGGTCACACGCCAGTTTTCCACCCCCCGAATCTCCTCCAggcg                                                     >  2:378371/1‑236 (MQ=255)
                                                                                                                                                                                            cGATGGGGTTACGGGTGGATGCCGCCATGGGGGGGGTGGAGAACGTCGAGGGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGGTGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATgctgct                                                  <  1:221426/238‑1 (MQ=255)
                                                                                                                                                                                                aGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCACCGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCACCCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCGGCTTTCat                                             >  1:238918/1‑238 (MQ=255)
                                                                                                                                                                                                  ggTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGa                                                                                                                           <  1:202728/159‑1 (MQ=255)
                                                                                                                                                                                                       cgggtgggtgACGCAATCGGGGGGGTGGAAACCGTCGAGGGTGTCATGGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGGGACGCATAAATCGATGGGGCAGATCCAACGGGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTtgt                                      <  1:65332/237‑1 (MQ=255)
                                                                                                                                                                                                            ggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGAt                                                                                                                                                                                         >  2:809721/1‑87 (MQ=255)
                                                                                                                                                                                                            ggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGAt                                                                                                                                                                                         <  1:809721/87‑1 (MQ=255)
                                                                                                                                                                                                            ggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGCTGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGGTCTCCTCCATGCTGCTTTCGGTATTTTGGGCaa                                 >  1:345970/1‑239 (MQ=255)
                                                                                                                                                                                                            ggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGGGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTTTGGCaa                                 >  1:393910/1‑239 (MQ=255)
                                                                                                                                                                                                            ggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCaa                                 >  1:98565/1‑239 (MQ=255)
                                                                                                                                                                                                            ggATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGCCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCCGTTCCCCATCCCGCTGATCGCCCCCCACCTGCTTTACGTAGTTGTGGCaa                                 >  2:639031/1‑239 (MQ=255)
                                                                                                                                                                                                             gATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGGGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAAt                                >  1:83824/1‑239 (MQ=255)
                                                                                                                                                                                                              ttgccGCCATCGGGGTGGGGGAAACGGTCGGGGGTTCCATTGGGGAAGTA‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAAt                                <  1:589152/234‑1 (MQ=255)
                                                                                                                                                                                                                  cGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTCCC‑GCCGAAGGACGCGACGCATAACTCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGGGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCACTCTGCTTTCCGTATTTGTGGCACTGAGca                           >  2:101710/1‑238 (MQ=255)
                                                                                                                                                                                                                  cGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGTAGATCTACCGCCAGTTCTCCATCACGCTGAGCTCTTCCAGGCTGCTTTCCGTATTTTGGGCaactgtct                           >  1:282194/1‑233 (MQ=255)
                                                                                                                                                                                                                  cGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTCCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGcc                           >  1:285692/1‑239 (MQ=255)
                                                                                                                                                                                                                   cccATGGTGGTGGTGGAGAACGTCGGGCGTGTCATTGCGAAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCt                          <  1:195895/238‑1 (MQ=255)
                                                                                                                                                                                                                   cccATGGTGGGGGTGGAGACCGTCGAGCGTGTCATGGCGGAAGAG‑AAGCTACC‑GCGGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCt                          <  1:564517/238‑1 (MQ=255)
                                                                                                                                                                                                                    ccATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGGGGAACCTGGGGGATCTACCGCCAGTTACCCATCACGCTGATTTCCTCCATGCTGCTTTCAGTATTTGTGGCAATAAGCCt                          >  1:1049237/1‑238 (MQ=255)
                                                                                                                                                                                                                     cATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCCCCGGGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGGGATTTACCGCCCGTTTTCCATCACCCTTATCCCCCCCACGCTGCTTTCAGTATTTTGGGCAATCAGccgg                         >  2:331427/1‑236 (MQ=255)
                                                                                                                                                                                                                            gtggtggAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGAtctc                                                              >  1:198584/1‑194 (MQ=255)
                                                                                                                                                                                                                              ggtggAGAACGTCAGGGGGTTCATTGGGGAAGAT‑AGCCTCCC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACccctgcc                <  1:717586/238‑1 (MQ=255)
                                                                                                                                                                                                                               gtggAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCCCCCCGATCTCCTCCATCCTGATTTCCGTATTTGGGGCAATGAGCCTGACccctgc                 >  2:901280/1‑236 (MQ=255)
                                                                                                                                                                                                                                tggAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATgggg                                                                                                                                                                                     <  2:868372/71‑1 (MQ=255)
                                                                                                                                                                                                                                tggAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATgggg                                                                                                                                                                                     >  1:868372/1‑71 (MQ=255)
                                                                                                                                                                                                                                   agaACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGAAAGCGACGCCTAAATCGATGGGGCCGCTCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGCGTTTCTGCCGATGGCCTTCATGAGCGGTGCACCCGGGGAGATCTACCACCCGTTCACCCTCACGCTGATTTTCCCCCCGCCGCTTTCAGTATTTGTGCCACTAAACTTCACccccgcccaagc           >  2:247373/1‑234 (MQ=255)
                                                                                                                                                                                                                                         tCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCACTCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACccctgcccttggggccccc    >  2:772494/1‑229 (MQ=255)
                                                                                                                                                                                                                                            aGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCTTCCATGCTGCTTTCAGAATTTTTGGCAATGAGCCTGACCCCTGCCCTTTGCGccacctg  >  1:658637/1‑236 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                             
AAGTTTTCAAAACACTGGTTGAGGCTATCATCCTAGTCTTCCTGGTCATGTATCTGTTTT‑TGCAGAATTTCCGTGCCACAATCATCCCGACGATTGCCG‑TACCGGTGGTTATTCTCGGGACGTTTGCGATCTTGTCGGCGGTCGGTTTCACCATCAACACGTTGACTATGTTCGGGATGGTGCTGGCGATAGGGTTACTGGTGGATGACGCCATCGTGGTGGTGGAGAACGTCGAGCGTGTCATTGCGGAAGAT‑AAGCTACC‑GCCGAAGGAAGCGACGCATAAATCGATGGGGCAGATCCAACGTGCGCTGGTCGGTATTGCCGTTGTTCTTTCCGCAGTGTTTATGCCGATGGCCTTTATGAGCGGTGCAACCGGGGAGATCTACCGCCAGTTCTCCATCACGCTGATCTCCTCCATGCTGCTTTCAGTATTTGTGGCAATGAGCCTGACCCCTGCCCTGTGCGCCACCAT  >  NC_000913/3661429‑3661900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑