| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,277,500 | T→G | 17.7% | V55G (GTG→GGG) | yhaV → | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,277,500 | 0 | T | G | 17.7% | 146.4 / 6.7 | 76 | V55G (GTG→GGG) | yhaV | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system |
| Reads supporting (aligned to +/- strand): ref base T (11/46); new base G (9/5); total (25/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.85e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAACAAGGAAAGAAACTTGTCGCTGGCAT‑GGACGTCAACATTGATGATGAGATTGGCGACGACGAATAATGGATTTTCCACAAAGGGTTAA‑TGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCA > NC_000913/3277269‑3277730 | caacaaGGAAAAAAACTTGTCGCTGGCAT‑GGACCTCAAAATTGATGATGAGGTTGGGGACGACAAATAATGGTTTTTCCACAAAGGGTTAA‑TGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGTTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTgag < 2:837743/239‑1 (MQ=255)caacaaGAAAAAAATATTGTCGTGGACTG‑GGACTTCAACATGGATGAGGAGAGTGGCGACGAAGAATAATGGTTTTTCCACAAAGGGTTAA‑TGGTGGGGTTTTTTATGCTCATCCCTGTTTTCAGGAAACCAAC‑TACGCTTTAGTTGCCGAAGTGGAAACATAAAAGGGAAAAGATCCTAAAAATTATCAGAAAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTgag < 2:469887/239‑1 (MQ=255)caaaaaGGAAAAAAACTTGTCTCTGGAAT‑GGACGTCAACAGTGAGGATGAGATTGGCGACGACGAATAATGGATTTTCCACAAAGGGTTAA‑TGGTGGGGCGCTATAGGCTCACCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGAAATTAAAGGGAAAAGACCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTgag < 2:866713/239‑1 (MQ=255)aaacaaGGAAAGAAATTTGTCGCGGGAGA‑GGACGACAACATTGAGGAGTAGTTTGGCGACCAGAAATAAGTGATTTTCCAAAAAGGTTTAA‑TGGTTGGGCGTTATATGCCCATCCCTGTTTCAAGGAAACCTCC‑GACGCTTTAGTTGCCGAAGTGGATACATAAAAGGAAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTgag < 2:612668/238‑1 (MQ=255) aaGGAAAGAACCTTTCCGCTGGCAG‑GGACCTAAAAATTGGTGGAGAGATTGGCGACGAAGAATAATGGATTTTCCACAAAGGGTTAA‑GGGTTGGGCGATATATGCTCACCCCTGTTTCCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATAAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGc < 2:1015247/239‑1 (MQ=255) ggAAAGAAACTTGTCGCTGGCAT‑GGACGTCAACATTGATGATGAGATTGGCGACGACGAATAATGGATTTTCCACAAAGGGTTAA‑TGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGAtttgaggggat > 1:660743/1‑230 (MQ=255) gaaaCTTGTCGCTGGCAT‑GGACGTCAACATTGATGATGAGATAGGCGACGACGAATAATGGATTTTCCACAAAGGGTTAA‑TAGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAACGGGAAAAGATCCTGCAAATTATCCGAGACAAGCCG‑CCCCAAACTTATTGGCGGCAGGCCAT‑CAAATGATTgagtagacatttcc > 1:971723/1‑231 (MQ=255) cttgtgctgggCAT‑GGACGTAAAAATGGATGATGAGATTGGCGACGACGAATAATGGATTTTCCACAAAGGGTTAA‑TGGTTGGGCGTTATATGCTCATCCCTGTTTTCAGGAACCCTAC‑GACCCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTc < 1:575341/230‑1 (MQ=255) gggCTGGGATGGGACTTCAACTGTGATGGTGGGGTGGGCGCCAAAGAATAAGGGATTTTCCACAAAGGGTTAA‑TGGTTGGGCGTTATATGCTCATCCCTGTTTGAAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGAAATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAAt < 2:221934/237‑1 (MQ=255) t‑GGGCGTAAACATGGATGATGTGTTTGGCGACGACAAAAAATGGATTTTCCACAAGGGGTTAA‑TGGTTGGGCGCTAAATGCTCAGCCCTGTTTACAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATAAAAGGGAAAAGATCCTGAAAATTATCAGAAAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCAc < 2:732899/239‑1 (MQ=255) caaattttatgatgcAATTGGCGACGACGAATAATGGATTTTCCAAAAAGGGTTAA‑TGGTGGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAATTCGAGACATTAAAGGGAAAAGTCCCTGAAAATTATCAGAAAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCAtt < 1:113648/231‑1 (MQ=255) cAACATTGATGATGAGATTGGCGACGACGAATAATGGATTTTCCACAAAGGGTTAA‑TGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAACCCG‑CCACAAAGTTATTGTCGGTAGTCCAT‑AACAAGATTTAGGGGCAATACACGGTCAATCCACCATCACCTGcct > 1:952034/1‑236 (MQ=255) tgaGATTGGAGACGGCGAATAAGGGATTTTCCACAAGGGGTTAA‑TGGTTGGGCGCTATAGGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGTTTTAGTTGCCGAAGGCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCa < 1:738924/238‑1 (MQ=255) gatagtGGCGACGACGAATAATGGATTTTCCACAAAGGGTTAA‑TGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAg < 1:589002/234‑1 (MQ=255) gagaTTGGCGACAACAAAAAAGGGATTTACCACAAGGGGTTAA‑TGTTTGGGCGTTATATGCCCATCCCTGTTTACAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGGCGAGACATTAAAGGGAAAAGATCCTAAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAg < 1:680850/239‑1 (MQ=255) tGGCGACGACGAATAATGGATTTTCCACAAAGGGTTAA‑TGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAA‑AAAAGGCTTGAGGAGCCAATAAAGGTCAATACATCATCAACGGCATTTCGCCATGGCAAGTCGtt > 1:331828/1‑239 (MQ=255) tctacgaATTATGTTTTTTCCAAAAAGGGTTAA‑GGGTTGGGCGTTATTTGCTCATCCCGTTTTTAAGGAAACCTAC‑CACGCTTTAGTTGCCGAAGTCGAGACATAAAAGGGAAAAGATCCTGAAAATTAGCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGct < 2:716838/236‑1 (MQ=255) cgacgaATAATGGATTTTCCACAAAGGGTTAA‑TGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGGAGTCCCTAAAAGGGTTTGGGGGGCA‑ATACCGGGCAATCCATCATCACCGGGCTTTCCCAATGGCAAATGGTT‑Aggg > 1:215978/1‑236 (MQ=255) atatggttttttCCAAAAGGGGTTAA‑TGGTGGGGGCTTATAGGCCCATCCCTGTTTCAAGGAAACCTAC‑CACGTTTTAGTTGCCGAAGGCGGGACATTAAAGGGAAAAGCGCCGGAAAATGATCAGAAAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGa < 2:476774/230‑1 (MQ=255) atagtttaTTTTCCACAAGGGGTATA‑TGTTGGGGGGTTTTGGTCTCATCCGTTTTTAGAAAAACACTAC‑GGCGTTTTTGTTGCCAAAGCAGAAAAATGAAAGGAAAAAGACCGTAAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCAGCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGa < 2:384585/231‑1 (MQ=255) ataatGGATTTTCCCAAAAGGGTTAA‑TGGTTGGGCCTTATATGCTCACCCCTTTTTTCAGGAAACCTAC‑GATGCTTTAGTTGCCAAAGTCGAGACATTAAAGGGAAAAGTTCCTAAAAATTATCAGAAAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGa < 1:1076625/238‑1 (MQ=255) aatGGATTTTCCAAAAAGGGTTAA‑GGGTTGGGCGCTATATGCTCATCCTTGTTTTCAGGAACCCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCcatcat < 1:543344/197‑1 (MQ=255) ttttCCACAAAGGGTTAA‑TGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAAGGAATTAGGAGCCTAATAATGGCAATCCATCATCACCGGCATTCCGTCATGGCCAGGCGGT‑AGGCCCTGGGGAAAAATaaa > 1:118317/1‑239 (MQ=255) ataggagaaaGGGTTAA‑TGGTGGGGCGTTTTATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCGAAAGTCGAGAAATTAAAGGAAAAAGATCCTGAAAATTATAAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGa < 1:661832/232‑1 (MQ=255) tCCACAAAGGGTTAA‑TGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGACCCT‑AAAGGATTTGAAGAGAATATAATGGGCAATCCATCAACACCTGCATTCCTGCATTGCCAGTCGGT‑AGGCTCT‑GGGGAAAATaaaaaac > 1:44050/1‑235 (MQ=255) aaaGGGGTAAGTGGTTGGGGACTATTGCCCCATCCCT‑TTTTGAAGAAAACTACGGGCGTTTTAGGTGCCGAAGTCCAGCCATTAAGGGGAAAAGACCCTGAAAATTATCGGAAAAACGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑Tc < 2:659671/239‑1 (MQ=255) ggTTAA‑TGGTTGGGCGTTATATGCTCATCCCTTTTTACAGGAAACCTCC‑GACGTTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGt < 2:193355/168‑1 (MQ=255) tGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGGGATTGAGGAGCATATCACGGTCAATCcatca > 1:193355/1‑168 (MQ=255) tGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGGAGTCCAT‑AAAGAAATTTAGGAGCAAAACACAGGCAAACCATCATCACCCGCATTCCCTTCAGGCAAGGCGTT‑TGGGTCC‑GGGGAAAATAAAAACAGGTTCACAGGAAAAATTTg > 1:23267/1‑239 (MQ=255) gggCGCTATATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCCT‑AAAGAGATTGAGGAGCATATTACGGTTAATCCATCATCACCGGGATTCCGTCATTGCAAGACTTT‑AGGGTCT‑GGGAAAAATAAAGACTGG‑GCACCGGGAAAATTTTGt > 1:105750/1‑239 (MQ=255) gggCGCTATATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAATGATTGAGGAGCATATAACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATTAAAACTGG‑GCACGGGGAAAATTTggg > 1:217870/1‑238 (MQ=255) tataTGCTCATCCCTGTTTTCAGGAACCCTAC‑GACGTTTTAGTTGCCGAAGTCGAAACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGa < 1:525664/211‑1 (MQ=255) tataTGCTCACCCCTGTTTTGAGGAAACCTCC‑GCCGTTTTAGTGGCGAAAGTCGAGAAATTAAAGGGAAAAGATCCTGAAAATTATCAGAAAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTgg < 1:930374/238‑1 (MQ=255) tcacctcttttttCAGGAAACTACC‑GCAGTTTTAGTTCCAGAAGACAAGACATTAAAGGAAAAAGATCCAGAAAATTACAATACAAACGCCG‑CCCCAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATc < 2:707822/230‑1 (MQ=255) tCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGGCCAT‑AAAATGATTGAGGGGCACATCACGGTCAATCCCTCCTCACCCGCATTCCGCCAAGGCAAGTCGTTAAGACCCT‑GGG‑AAAATAAAGACTGG‑GCACGGGGAAAAATTGGGGTCGGT‑CGGTATc > 1:274357/1‑239 (MQ=255) tCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGAGATTGAGGAGCATATCCCGGTCCATCCATCATCACCGGCATTCCGTCATGGCAAGGAGGT‑AGGCTCT‑GGGTAAAATAAAGACTGG‑TCCCGGGGAAAATTTGTTGCTGGT‑CGttttat > 1:785717/1‑233 (MQ=255) tGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAAGGATTTAGGGGAAAATCACGGTCAAACCATCATCACCGGCCTTCCGTCATGGCAAAACGGT‑AGGCTCT‑GGGAAAAAAAAAAACAGG‑GCACGGGGAAAATTTGGGGCTGGG‑GGTTATCGTCcctt > 1:947182/1‑239 (MQ=255) gTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCCT‑AAAAGGATTTAGGAGACTATCACGGGCAATCCCTAATCACCGGCACTTCGTCATTGCAAATGGGT‑AGGCGCT‑GGGGAAAAAAAAAACTGG‑TGACGGGGAAAAATTGGTGTTGGT‑CGtttttcgctcttt > 2:971771/1‑228 (MQ=255) agaaaaCCTCC‑GACGCTTTAGTTGCCGAAGTCGAGAAATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGt < 1:1012267/236‑1 (MQ=255) aaCCTAC‑GACGCTTTAGTTGCCGAAGGCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAAAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTta < 1:389903/237‑1 (MQ=255) tttAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCCT‑AAAGTGATTTTGGGGCAAATCACGGGCAATCCATCATTACCCGCCTTCCGTCATGGCACGTCGTT‑GGGGTCT‑GGGGAAAAAAACAAATAG‑GCACGGGGAAAATTTTGGGCTGGTGGGTTAT‑GTCTCTTCTTTTTTTAT‑AGAGaaaaaagaa > 2:1005752/1‑235 (MQ=255) tttAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCCT‑AAAAGGGTTGGGGGGCATATACCGGTCCATCCATCATCACCGGCAATCCCTCATGGCAAGACGTT‑AGACTCT‑GGGGAAAATAAAAAATGG‑ATCCGGGGAAAATTTTGTGGTGGG‑CGTTATTTTCTCTTTTTTTGCTATGAGTaaaaaaaaa > 2:370956/1‑236 (MQ=255) tttAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGAGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCCAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑GCACGGGGAAAATTTGGGGCTGGT‑CGTTATCGTCCCTTTTTTCGTTAT‑AGTTaaaaaaaaa > 1:228469/1‑235 (MQ=255) tAGTTGCAGAAGTCGAGACATAAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGaaa < 1:309135/239‑1 (MQ=255) gtGCCAAAGCCGAAACTGTAAAGGGAAAAGAACCTAAAAATTACCAGAAAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAA‑TTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGtca < 1:289748/238‑1 (MQ=255) gCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAATGATTGAGGAGCATATCACGGTCAAACCATCATCACCGGCATTCCGTCATGGCAAAGCGGT‑AGGCTCT‑GGGAAAAATAAAGACTTG‑TCCCGGGGAAAATTTTGGGCTGGT‑GGTGTTCGTCTCTTCTTTTTTTTT‑AGGGAAAAAAAGaaaagcat > 1:1074119/1‑234 (MQ=255) aagtggaaaatttAAAGGGAAAAGTCTCTGAAATTTATCAGAAAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCAtt < 2:215978/228‑1 (MQ=255) cgggaaaTTAAAGGAAAAAGGTCCAAAAAATTAAAGAAAAAAAGCCG‑CCACAAAGTTATTGGGGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTgg < 2:947182/233‑1 (MQ=255) aataTTAAAGGGAAAATATCCTAAAAATTTTAAGAGAAAGGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGgga < 2:32470/235‑1 (MQ=255) aaaGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGGCCAT‑AAAGTGATTGAGGAGCATATCAAGGTCAATCCATCATCACCAGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑GCACGGGGAAAATTTGGTGGTGGT‑GGTTATTGGCTCTTTTTTTGTTAT‑AGGGAAAAAAAGAAAATAATAATTATggggaggggga > 2:298402/1‑231 (MQ=255) aGGTAAAAGTACCTGAAAATTCTCAAAAAAATGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAAc < 1:232394/239‑1 (MQ=255) aGGAAAAATATCCAAAAAATTAACAGAAAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAAc < 2:1074119/239‑1 (MQ=255) aGGAAAAAGATCCTGAAAATTATAAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAAc < 1:57618/239‑1 (MQ=255) aGGAAAAAGATCCAAAAAATTAACAGAAAAAAGCCG‑CCACAAAGTTTATGGCGGTTGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAAc < 2:118317/239‑1 (MQ=255) atctaaaaatTTTTCAGAGAAACGCCC‑CCACAAAGTTATTGGCGGTAGTCAAA‑AAAGTTATGGGGGAGCATCTTACGGTCAAGCCATCAACGCCGGCATTCCGTCATGGCAAGTCGTT‑AGGCGCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAac < 2:815187/233‑1 (MQ=255) aTCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCAAATCACGGGCAATCCATCATCACCGGGATTCCGTCATGGGAAGGCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGGGCTGGG‑CGTTATCGGCTCTTCTTTCGTTAT‑ATTGAAAAAGAGAAAATCATCATTCTTGGATGGATCAACGATGaaaaa > 1:114907/1‑238 (MQ=255) cTGAAAATTAACAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGGCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACAct < 1:720264/239‑1 (MQ=255) aaaaTCAGCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATACCACGGTCAAGCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTg < 1:53758/239‑1 (MQ=255) attggaaaaaaGCCG‑CCTCAAAGTTATGGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCCCGGTACATCCAGCATCACCGGCACTCCGTCATGGCAAGGCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTGCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCAcc < 2:752446/232‑1 (MQ=255) agaaAAAAGCCG‑CCAAAAAGTTATTTGCGGTATTCCAT‑AAATGGATTGAAGCGCATATCCCGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGGCTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTAc < 1:425076/239‑1 (MQ=255) aaaaaCCCC‑CCAAAAAGTTATTGGCGGGAGTCCAT‑AAAGTGATTTAGGAGCATAACCCGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTAc < 2:897907/235‑1 (MQ=255) aaaaGCCCCCCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTAc < 2:1044102/236‑1 (MQ=255) aaGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAATGATTGAGGGGCATATCACGGTCAATCCATCATCACCGGCCTTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAAAAAAAACTGG‑TCACGGGGAAAATTTGGTGCTGGG‑CGGTATCGTCTCTTCTTTCGTTAT‑AGGGAAAAAGAGAAAATCATCATTCTGGGGTGGATGAAACATGAAAAAACCTTGCGCCCCTCCGGTaaa > 1:1003045/1‑239 (MQ=255) cggccaaaaGGTTTTGCCGGGTGTCCAT‑AAAGGTAATGAGGGGCTAATCACGGGCAAGCCCTCATTCACGGCATTCCGTCATGGGAAGTCCTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACCGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaa < 1:425868/231‑1 (MQ=255) gcacaAAGTTTTTGGGGGTAGTCCAA‑AAAGTTATTTGGGAGCATTGCACGGTCAAGCCATCATCACCGGCATTCCGTCATGGCAAGGCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACa < 2:592831/238‑1 (MQ=255) cctcaAATTTTTTGGCGGTATTCCAA‑AAAGTACTTGAGGAACATTACAGGGTACATCCAACATCAACGGCATACCGGCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACa < 2:705727/236‑1 (MQ=255) ccccaAAGTTATTGGCGGTAGTCCAT‑AAAGTGAATGAGGGGCATATCACGGTCAATCCATCAGCACCGGCATTCCGGCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACa < 2:873103/236‑1 (MQ=255) ccACAAAGTTATTGGCGGTAGTGCAT‑AAAAGAGTTTAGGGGGATATCACGGTCAATCCCTCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGGTCT‑GGGGAAAAAAAAGAATGG‑TCACGGGGAAAATTTTGTGCTGGT‑CGTTATCGTCTCTTCTTTTGTTAT‑AGTGAAAAAAAGAAAAGAATCATTTTGTGGTGGATGAACGATAGAAAAACTCTTGGCCCCTAAGGGgaaaaaaaa > 2:1081596/1‑237 (MQ=255) ccACAAAGTTATTGGCGGTAGTCCAT‑AAAATGATTGAGGGGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCCAATCGTT‑AGGCTCT‑GGGGAAAATAAAAACTGG‑GCACCGGGAAAAATTGGTGCTGGG‑AGTTTACGTTCCTTTTTTTGTTAT‑AGTGAAAAAGAGAAAATCATCATTTTGGGATGGGTGAACGTTGAAAACAATCTGCGGACCCACGGTaaaaaaaac > 1:222981/1‑237 (MQ=255) cacaAAGTTAATGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCAACATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACa < 1:38279/238‑1 (MQ=255) tttGGCGGTTGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATGTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCtata < 2:429885/238‑1 (MQ=255) aTTGGCGTTAGGCCAT‑AAAGGGATTGAGGGGCATATACCGGTCAATCCATCATCACCGGACTTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGCCGGG‑TCACGGGTAAAAGTGGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCtata < 2:249127/239‑1 (MQ=255) aTTGGCGGTAGTCCAT‑AAAGGGATTGAGGAGCATTGCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCtata < 1:319912/239‑1 (MQ=255) ttGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAAATTGGGGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAAAGAAAGTCATCATTTTGGGATGGATGAACGATGAAAAAACTCTTCGCACCTACGGTAAAAAAACAAATGCCtcta > 1:109962/1‑238 (MQ=255) ggTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTa < 1:370956/238‑1 (MQ=255) ccAT‑AAAGGGATGGAGGAGGATTTCACGGGTAAGCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACGGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCa < 2:952034/239‑1 (MQ=255) | CAACAAGGAAAGAAACTTGTCGCTGGCAT‑GGACGTCAACATTGATGATGAGATTGGCGACGACGAATAATGGATTTTCCACAAAGGGTTAA‑TGGTTGGGCGCTATATGCTCATCCCTGTTTTCAGGAAACCTAC‑GACGCTTTAGTTGCCGAAGTCGAGACATTAAAGGGAAAAGATCCTGAAAATTATCAGAGAAAAGCCG‑CCACAAAGTTATTGGCGGTAGTCCAT‑AAAGTGATTGAGGAGCATATCACGGTCAATCCATCATCACCGGCATTCCGTCATGGCAAGTCGTT‑AGGCTCT‑GGGAAAAATAAAGACTGG‑TCACGGGTAAAATTTGGTGCTGGT‑CGTTATCGTCTCTTCTTTCGTTAT‑AGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCA > NC_000913/3277269‑3277730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |