| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,213,570 | Δ48 bp | coding (524‑571/1842 nt) | rpoD → | RNA polymerase, sigma 70 (sigma D) factor |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3213570 | 3213617 | 48 | 51 [0] | [0] 51 | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3213569 | 0 (0.000) | 47 (0.760) | 41/264 | 0.5 | 100% | coding (523/1842 nt) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| ? | NC_000913 | 3213618 = | 0 (0.000) | coding (572/1842 nt) | rpoD | RNA polymerase, sigma 70 (sigma D) factor | |||||
ACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3213420‑3213569‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTAACGCGTGACACCATCAAAGCGA > NC_000913/3213618‑3213758 ACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTAGCTGATGGGACAGTACGATCGTGTTGGAGCAGAAGAAAAGCGTCTGTCCGATCTGATAACGGGCTTTGTTGACGCGAACGCCGAAGca > 1:459230/1‑141 cGGATCAACCAGGTTCAATGCTACGTTGCTGCATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGA < 2:430862/142‑1 GGGATCAACCAGGTTCAATGCTCCGTAGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAAGAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCAGATCTGATCACCGGGTTTGCTGGCCGGAACGCAGGAGAAGA > 1:484824/1‑143 GATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATC < 1:285582/143‑1 TCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTG < 2:368314/143‑1 AACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCCGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAAGGCAGAAGAAGAGCTGGA > 2:556915/1‑143 AACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGA > 1:896674/1‑143 ACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGAC > 2:459399/1‑143 AGGTTCAGTGCGCCGTTGATGGATGACCGGAAGCGATCACCTAGCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGAT < 1:493687/143‑1 GGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACTCGAACGCAGAAGGAGTTCTGGTCGATG > 1:640548/1‑143 GTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGCAGCGCGTCGGTCCGATCTGATCACCGGCTTGGTCGACCCGAACGCAGCAGAAGAACGGGACCATGA > 2:995723/1‑143 GTTCAATGCTCCGGTGCTGAATATCCGGAAGCGAGCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGA < 1:1087137/143‑1 TGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGA > 2:314446/1‑143 CTCCGTTGCTGAATATCCGGACGCGATTACCTATCTGCCGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATG < 1:320789/143‑1 CGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCGGCACCATCTTATCTCCGTTTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAG < 1:555112/143‑1 gcTGCTGAATATCCGGGAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGA < 2:58575/141‑1 CTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGACGAAGATCTGGACGATGACGAAGATGAAGACGAA > 2:715382/1‑143 AATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAA > 1:801894/1‑143 ATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGCCTGTCCGATCTGATCACCGGCTACGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAAATGAAAACGAAGAAG > 2:911483/1‑143 TATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCATTGTTGGCCCGAACGCCGAAGAAGATCTCGACGATCACGAAGAAGAAGACCACGAAGA > 2:815376/1‑143 CCGGAAGCGATCACCTATCTGCGGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGAGCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGG < 2:942787/143‑1 GGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCG > 2:102486/1‑143 CGATCACCTATCTGCTGGAACAGGACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGAC < 1:631142/143‑1 CTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCG > 1:849265/1‑143 TCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGGTGGCGAGGACGACAGCGCCG > 2:5786/1‑143 TCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGAACGTGTCTTAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCG > 1:868433/1‑143 gTGCTGGAGCAGTACGATCGTGTTGATGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGTCGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGA < 2:988201/142‑1 TGGACCCGTAGGGTCGTGTTGCAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGAT < 2:318385/143‑1 TGGAACAGTACGATCGGGTTGAAGCAGAAGAAGGGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGAT < 2:102107/143‑1 GGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATG > 1:1111607/1‑143 GGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACAGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGCTG > 1:626054/1‑143 GAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGA < 1:941685/143‑1 GAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTGGACCCGAACGCAGAGGAAGATCTGGACGCTGACGAGCATGGAGACGAAGACAATGGCGAGGACGACAGCGCGGATagtga > 2:92092/1‑138 CGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGCAGAAGATGGCGCTGGCGACAGCGCCGATGATGACAACAGCA > 1:1151408/1‑143 CGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACAGGCTTTGTTGACCCGAACGCAGAAGACGACCTGGACGAAGACGACGATGACGACGAACCAGATGGCGACGACGACCGCGCCGACGACGACAACAGCA > 2:455329/1‑143 GATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCAT < 1:1174327/143‑1 TCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCG > 2:191596/1‑143 cggGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGA < 1:370692/140‑1 GTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCC > 1:158037/1‑143 AGAAGCGCGTCTGTCCGATGTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTC < 2:874619/143‑1 GCGTGTGTCCGATCGGATCACGGGCTTTGGGGACCCGAACGCGGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAGGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGTCCCGGAACTGGCTCGCGAAA < 2:148633/143‑1 GTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACCGCGCCGATGATGCCAACAGCCTCGACCCGGAACGGGCTCGCGAACAA > 2:238540/1‑143 CCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCG < 1:459399/143‑1 CTGATCACGGGCTTTGTGGATCCGAACGCAGAAGAAGAGCTGGAGGATGACGAAGATGAAGACGAAGAAGAGGGCAATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACT < 1:500614/143‑1 TGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTA > 2:171353/1‑143 ATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGGAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAAGTGGCTCGCGAAAAATTTGCGGAACTACG > 2:672976/1‑143 gGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTC < 1:1033498/142‑1 GGCTTTGTTGACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGAGCCGGAACTGGCTCGCGAACAATTTGCGGAACTACGCGCTCc > 1:408869/1‑142 ACCCGAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTA > 2:497803/1‑143 tAACGCAGAAGAATATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTAACGC < 1:1070243/142‑1 GAACGCAGAAGAAGATCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCCCGCGAAAACTTTGCGGAACTACGCGCTCAGCACGGTGTAACGC > 2:52352/1‑143 ACGCAGAAGAAGACCTGGACGAGGACGAAGACGAAGACGAAGAGGATGGCAATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTAACGCGT < 2:510549/143‑1 agtATCTTGGCGATGACGAAGATGAAGACGAAGAAGAGGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTAACGCGTGACACCATC < 2:338101/140‑1 acCTGGACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTAACGCGTGACACCATCAAA < 1:123797/141‑1 ATCTGGACGATGACGAAGACGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTAACGCGTGACACCATCAAA < 1:53114/143‑1 GGACGATGACGAAGATGAAGCCGAAAAAGATGGCGTTGACGACAGCGGCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTAACGCGTGACACCATCAAAGCGA < 2:1010059/143‑1 ACGGGATCAACCAGGTTCAATGCTCCGTTGCTGAATATCCGGAAGCGATCACCTATCTGCTGGAACAGTACGATCGTGTTGAAGCAGAAGAAGCGCGTCTGTCCGATCTGATCACCGGCTTTGTTGACCCGAACGCAGAAGAAGATCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3213420‑3213569‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagatctggACGATGACGAAGATGAAGACGAAGAAGATGGCGATGACGACAGCGCCGATGATGACAACAGCATCGACCCGGAACTGGCTCGCGAAAAATTTGCGGAACTACGCGCTCAGTACGTTGTAACGCGTGACACCATCAAAGCGA > NC_000913/3213618‑3213758 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |