New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 227052	41 (0.620)	6 (0.090)	4/272	9.2	13.3%	noncoding (1294/2904 nt)	rrlH	23S ribosomal RNA of rrnH operon
	?	NC_000913	2727910 =	NA (NA)					noncoding (1275/2904 nt)	rrlG	23S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGC  >  NC_000913/226910‑227128                                                                                                                                               |                                                                             ccGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGGGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTGACGATAAAGCGGGTGAAAGGCGCGCt                                                                              >  2:1083362/1‑143 (MQ=255)  cGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGGTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc                                                                             >  1:750620/1‑143 (MQ=37)   gAAGCTGCGGCAGCGACGCTTATGCGCAGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTACCAGAAGTGCGCATGATGACATAAGTGACGATAAAGCGGGCGAAAAGCCCGCTCg                                                                            >  2:1142389/1‑143 (MQ=11)       cTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGGGGTATGCTGGCGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCgg                                                                        >  1:869893/1‑143 (MQ=255)         gCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTGCTGGAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa                                                                      <  2:767790/143‑1 (MQ=255)         gCGGCAGCGACGCTGATGCGCTGTTGGGTAGGGGCGCGTTCTGTTAGGCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGTCCTACACCATGCTTATGTGGGTGTTAAGCCCGTTCGCCGGaa                                                                      <  2:259363/143‑1 (MQ=2)                  aCGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAggg                                                             <  1:613988/143‑1 (MQ=38)                       tATGCGTTGTGGGGTAGGGGAGCGTGCTGTAAGCCGGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCt                                                        <  2:740414/143‑1 (MQ=255)                       caTGCGTTGTTGGGTAGGGGGGCGTTCTGTAAGCCAGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCGGGCAGAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCt                                                        <  2:464808/142‑1 (MQ=11)                          gctttgttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTc                                                     <  1:786336/140‑1 (MQ=25)                          gCGTTGTTGGGTAGGGGCGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCAGCTCGCCGGAAGACCAAGGATCCCTGTc                                                     >  2:358641/1‑143 (MQ=255)                          gCGTTGTTGGGTAGGGGAGCCTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTATCGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTc                                                     <  1:216041/143‑1 (MQ=255)                            gttgttGGGTAGGGGAGCGTTCTGTAAGCCTGTGCAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCa                                                   >  1:849956/1‑143 (MQ=21)                             ttgttgCGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGCATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCaa                                                  <  1:512657/143‑1 (MQ=21)                              agttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGGGGGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGGCCAAc                                                 >  1:287768/2‑143 (MQ=255)                               gtcgggTAGGGGAGCGTTCTGTACGCCTGTGAAGGTGCACTGTGACGTACGCCGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCaaag                                                <  1:336687/140‑3 (MQ=11)                                ttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGt                                               >  1:1116798/1‑143 (MQ=35)                                          gAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc                                     >  1:611586/1‑143 (MQ=35)                                             cGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTGAATCGGGGCAgg                                  >  1:515658/1‑143 (MQ=25)                                                   gcaaGCCTGTGAAGGCGTACTGTGAGGGATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGt                            <  2:355816/141‑1 (MQ=12)                                                   gTACGCCCGTGACGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGt                            <  1:279227/143‑1 (MQ=255)                                                   gTAAGCCGGTGAAGGTGTACGGGGAGGTATGCTGGAGGTAGCAGAAGTGCGAATGCTGACATAAGCAACGATAATCCGGGTGACAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGt                            <  2:1004027/143‑1 (MQ=11)                                                    tAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTc                           <  1:420769/143‑1 (MQ=34)                                                       gcatgtgGAGGTGAACGATGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACACAAGCAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAAACCAAGGCTCCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAc                        <  2:83692/140‑1 (MQ=11)                                                       gCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGAATACGGAGTGCGAATGCTGACATAAGTACCGATAAAGCGGGAGAAAAGCCCGCGCGCCGGAGGTCCAAGGGTTCCTGTCGAACGGTAAGCGGGGCAGGGTGAGTCGAc                        >  2:22096/1‑143 (MQ=11)                                                         cTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATCAAGCGGACGAAAAGCCCGCTCGACGGCAGACCACGGGTCCCTCACCCACGCCAATCGCGGCAGGGAGAGTCGAccc                      >  2:672668/1‑143 (MQ=11)                                                             gAAGGTGTCCTGTGATGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTaa                  <  1:905737/143‑1 (MQ=17)                                                              aaGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAATTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAg                 <  1:934912/143‑1 (MQ=25)                                                                 gtgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGGGAGTCGACCCCTAAGGCg              >  2:852508/1‑143 (MQ=25)                                                                  tgtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGa             >  1:1111277/1‑143 (MQ=35)                                                                  tgtACGGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCACACGTCAACACGGGCAGGGAGAAGCGCCCCCTAAGGCGa             >  2:917653/1‑143 (MQ=11)                                                                   gtACTGTGAGGTATGCTGGAGTTATCAGAAGGGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAg            <  2:314086/143‑1 (MQ=21)                                                                   gtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGATACTCGGGGCAGGGCGAGTCGACCCCTAAGGCGAg            >  2:640284/1‑143 (MQ=255)                                                                   gtACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGAGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTACGGCgcg            >  2:559378/1‑141 (MQ=255)                                                                    tACTGCGAGGTATGCGGGAGGTGTCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAgg           <  2:1003027/143‑1 (MQ=16)                                                                     aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAACGCGCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGc          >  1:855006/1‑143 (MQ=17)                                                                     aCTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGc          <  2:1143497/143‑1 (MQ=32)                                                                       tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATAGGGGCAGGGTGAGTCGACCCGTAAGGCGAGGCCg        >  2:1091595/1‑143 (MQ=17)                                                                       tgtgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGCACAAGACCGACTTCAATCGGGGACGGGTGAGTCGAGCCCGAAGGAGAGGCCg        >  2:413017/1‑143 (MQ=11)                                                                         tgAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGaa      <  1:926728/143‑1 (MQ=32)                                                                          gAGGTATGCTGGAGGTACGAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCACGCTCGCCGGAAGACCAAGGGTTGCTGTCCAAGGTTAATCGGGGCTGGGTGAGTCGACCCCTAAGGCGAGGCCGaaa     <  1:282964/143‑1 (MQ=11)                                                                             gTATGTTGCAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGc  <  1:653032/143‑1 (MQ=14)                                                                                                                                               |                                                                             CCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTACTGTGAGGTATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGC  >  NC_000913/226910‑227128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.