Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	458,790	IS186 (–) +6 bp :: Δ1 bp	intergenic (+90/‑93)	clpX → / → lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	458790 =	0 (0.000)	45 (0.690)	36/278	1.0	100%	intergenic (+90/‑98)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	608008 =	NA (NA)					noncoding (2/1345 nt)	IS186	repeat region
*	?	NC_000913	= 458795	0 (0.000)	75 (1.160)	61/276	0.0	100%	intergenic (+95/‑93)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	= 609351	NA (NA)					noncoding (1345/1345 nt)	IS186	repeat region

ATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAAT  >  NC_000913/607866‑608145                                                                                                                                               |                                                                                                                                          aTAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATc                                                                                                                                           <  2:445486/143‑1 (MQ=255) aTAGTGCTGTGTTTAACGGTGATGGGAGTTACACTTCTGGTCGGAGACTAGCTGAGTGAGATTACGGTGAAAGAACGTAATATTGAGTATTAGGCTGTTCTCGATTACGAACCGAAGAAGTAGTGGTTGTGCAGGGAGTAATc                                                                                                                                           >  2:682397/1‑143 (MQ=255)            tttAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGGAGGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGACGTAGACGCTGTGCGGGGAGTCATGCCATACACGCt                                                                                                                                >  2:74866/1‑143 (MQ=255)            tttAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCt                                                                                                                                >  1:1050166/1‑143 (MQ=255)                  ggTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTa                                                                                                                          <  1:1158955/143‑1 (MQ=255)                    tGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAg                                                                                                                        <  1:1021158/143‑1 (MQ=255)                      cTGGGGTTTACGCGTCGGGCTGGAGACTCGCTGTGTGAGTTTTCGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAggg                                                                                                                      <  2:311601/143‑1 (MQ=255)                          gATTTACGATTCTGGTCGGAGACTCGCTGTGTGAGATTACGGTGAAGAAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTtgt                                                                                                                  <  1:96274/143‑1 (MQ=255)                           acttACGCTCCTGGTCGGAGACTCGCTTGGTGAGTTTCCGGGGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTATGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTtgtg                                                                                                                 <  1:159310/141‑1 (MQ=39)                            tctACGCGTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTgg                                                                                                                <  1:314131/141‑1 (MQ=255)                               aCGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGtgt                                                                                                             >  1:736857/1‑141 (MQ=255)                                 gCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa                                                                                                           >  1:681701/1‑143 (MQ=255)                                  cTTGTGGTCGGAGACTGTGTGTGGGACTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCGTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc                                                                                                          <  2:545258/143‑1 (MQ=38)                                    tCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGc                                                                                                        >  1:488748/1‑143 (MQ=255)                                           ggAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGGGTGATCGCGTGCGCTCTAACTTAAGGGTTGTGGAAAAAAACCTGatat                                                                                                 >  1:76356/1‑143 (MQ=255)                                            gagaCTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTATGCCTGAtgtg                                                                                                >  2:953950/1‑143 (MQ=255)                                                 tCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa                                                                                           >  1:154749/1‑143 (MQ=255)                                                    cTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCCTGATATGATTTAACg                                                                                        >  2:1067178/1‑143 (MQ=255)                                                      gtgtgAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCAGGGAGTAATCCCATCAGCGCTAACTTACGGGTTGTGGTATTACGCCTGATATGATTTAACGTg                                                                                      >  2:1142923/1‑143 (MQ=255)                                                       tgtgATTTTGCGGTGAAGGAACGGAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGc                                                                                     <  2:273185/143‑1 (MQ=255)                                                             tttACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa                                                                               >  1:94342/1‑143 (MQ=255)                                                               tACGCTGAACGAACGTAATATTCAGTTCAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt                                                                             <  1:1047079/143‑1 (MQ=255)                                                                 cGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTa                                                                           <  1:209832/143‑1 (MQ=255)                                                                  ggTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTAGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCGTGCTAGGACTTAACGTCCCACTGAATTat                                                                          >  1:774090/1‑142 (MQ=37)                                                                     ggaGGAACGTAGTATGGAGTGTAGGGCTGGTGTCGCTTACGAACCGAAGAAGTAGCCGTTGGGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCATGACGTGATTTAGTGTGCCGATGAATTActct                                                                       <  2:729264/141‑1 (MQ=21)                                                                     gAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTACATCGCGAGCGTGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActat                                                                       >  1:223896/1‑141 (MQ=21)                                                                         gAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACg                                                                   >  1:313793/1‑143 (MQ=255)                                                                           aCGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGAt                                                                 >  1:621781/1‑143 (MQ=255)                                                                             gTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTTTTACGCCTGATGTGATTTAACGTGCCGATGAATTACTCTCACGATaa                                                               >  1:67959/1‑143 (MQ=255)                                                                              tAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAc                                                              <  2:449095/143‑1 (MQ=255)                                                                              caaTATTGAGTGTGAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAAc                                                              <  2:71126/142‑1 (MQ=255)                                                                               aaTAGTGAGTTTAAGGCTGTTCTCGCTTACGAAACGAAGAAGTAGCCGTAGTGCGGGGAGTAATCCCATCAGAGCCAACTTAAGGGTTGTGGTATTACGCATCAAACAATCTAACGGGCCGAGAAAGTACTCGCACGATAACt                                                             >  2:311431/1‑143 (MQ=21)                                                                                acatTGAGTGTAAGGCTGTGCCCGCTCACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATACGCGCGAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTg                                                            <  1:398397/141‑1 (MQ=21)                                                                                  atTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGt                                                          >  1:903155/1‑143 (MQ=255)                                                                                  atTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCCCGCTAACCggc                                                          >  2:829681/1‑142 (MQ=255)                                                                                   ttGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATCAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGta                                                         >  1:944418/1‑142 (MQ=255)                                                                                   ttGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTc                                                         >  1:890491/1‑143 (MQ=255)                                                                                     gAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAg                                                       >  1:834290/1‑143 (MQ=255)                                                                                        tttAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCaa                                                    >  1:650677/1‑143 (MQ=255)                                                                                             ggCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTg                                               >  1:945209/1‑143 (MQ=255)                                                                                             ggCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTg                                               <  1:914738/143‑1 (MQ=255)                                                                                              gCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCCCGTTAACTGGTCAGCAAATccag                                              >  1:440685/1‑140 (MQ=255)                                                                                               cTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGc                                             <  2:94342/143‑1 (MQ=255)                                                                                                       gcgtACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAAGTGAGGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTg                                     <  2:522722/140‑1 (MQ=255)                                                                                                       gCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTg                                     <  1:180733/143‑1 (MQ=255)                                                                                                         ttACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCTATCTTGGt                                   >  1:1192738/1‑143 (MQ=255)                                                                                                         ttACGAACCGAAGAAGTAGCCGTGGTGCGGGGAGTAACCCCATAAGCGCTAACTTAAGGGTTGTGGGATTGCGCCGGATAGGATTTAACGTGCCGATGAAGTACTCTCACGATACATGGGCGGAAAATCTGGCCGATAATggc                                   >  2:392639/1‑142 (MQ=17)                                                                                                         ttACGAACCGAAGAAGCAGCCGCTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGCACGTGGTATTACACCTGCTATCATTTAACGTGCCGACGAACTACCGTCACGCTAACTCGTCAGCAAATCTGTCCCatgccggt                                   >  2:387958/1‑137 (MQ=17)                                                                                                           accaaCCGGAGAAGTGGGCGTTGTGCGGGGAGTAACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTaa                                 <  2:332770/140‑1 (MQ=14)                                                                                                              aaCCGAAGGAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATAGGATTACGCGTGCTTATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGcc                              <  2:1168381/143‑1 (MQ=17)                                                                                                                 cGAAGAAGTAGCCGTGGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCga                           <  2:263030/143‑1 (MQ=255)                                                                                                                      aagTAGCCGTGGTGCGGGGAGTAATCCCATCAGCGCTAACGTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAAc                      <  2:352679/143‑1 (MQ=255)                                                                                                                        ttAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCTATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTg                    <  2:508720/142‑1 (MQ=255)                                                                                                                        gTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGTTGTGTTTGATGCACAAAAAATGGTAACCAATTCTGGCCCATATTGGTAAGCCCAAAGAACTg                    >  1:550663/1‑143 (MQ=17)                                                                                                                        gTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACATGCCGATGAATTACTCTCACGAGAACTGGTCAGCAATTCTGGCCCAGCTTGGTAAGCCCGAAGGACTg                    >  1:610572/1‑143 (MQ=14)                                                                                                                        gTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTg                    <  1:319365/143‑1 (MQ=255)                                                                                                                           gCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGAt                 >  1:1168680/1‑143 (MQ=255)                                                                                                                            ccGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATCGGTACGCCCGAAGAACTGGATa                >  1:1107490/1‑143 (MQ=255)                                                                                                                             cGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGCTTTAACGTGCCGATGAATTACTCTCACGATAACTGGCCAGCAATTCTGGCCCATATTGGTAAGCCCGAATAACCGGCTAc               >  2:828196/1‑143 (MQ=14)                                                                                                                             cGTAGTGCGGGGAGGAATCCCATAAGCGCTAACTTAAGGGTTGTGGCATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATAc               <  1:648093/143‑1 (MQ=255)                                                                                                                                tgtgCGGGGAGTAATCCCGTAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTc            <  1:856550/143‑1 (MQ=255)                                                                                                                                    gggggAGTGAGCTCATAAGGGTTAAGTTGCGGGTTGTGGTATTACGCCTGATATGATTTAGCGTGTCGCAGATTGGCGGCCCAGATAGCGGTTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCa        <  2:850764/142‑1 (MQ=2)                                                                                                                                      gggAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGCAGAACTGGATACTTCGGCACg      >  1:307194/1‑143 (MQ=25)                                                                                                                                          gTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTCAGCCCGAAGAACTGGATACTTCGGCACGTAAt  <  2:1050166/143‑1 (MQ=17)                                                                                                                                               |                                                                                                                                          ATAGTGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACTCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAAT  >  NC_000913/607866‑608145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.