Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)62 (0.970) 57/284 0.1 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 1293032 =0 (0.000)69 (1.080) 54/284 0.1 100% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 128 total aligned reads displayed.

CAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCT  >  NC_000913/1292899‑1293181
                                                                                                                                            |                                                                                                                                              
tccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgctgcc                                                                                                                                              <  1:1119430‑M1/10‑1 (MQ=255)
tccggcggtgctgttgccggtacgcacgaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgccgcc                                                                                                                                              >  1:210525‑M1/134‑143 (MQ=255)
cAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAGGGAATTCAAAATTGTTCTTTATTTTGTGCCGgg                                                                                                                                              <  1:313184‑M2/143‑3 (MQ=255)
  cggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggcgggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggccgcatcacaTTCTGCCGCCaa                                                                                                                                            <  2:421855‑M1/12‑1 (MQ=255)
    aTTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGGTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaat                                                                                                                                          >  2:797592‑M2/1‑137 (MQ=255)
      tttAAGTGCTTCGCTCATTGTAGTAATCTCAAACTCTGAGTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatga                                                                                                                                        >  2:69228‑M2/1‑135 (MQ=255)
      ggtgcttttccccttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaataaa                                                                                                                                        >  1:1100565‑M1/128‑143 (MQ=255)
       gtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaataaat                                                                                                                                       >  1:60574‑M1/127‑143 (MQ=255)
        tAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgact                                                                                                                                      <  1:160869‑M2/143‑11 (MQ=255)
         atgtgGTTCGCGCATTGTAGTAATCTCTATTTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactc                                                                                                                                     >  2:538277‑M2/3‑132 (MQ=255)
          aGTGCTTTGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcc                                                                                                                                    >  2:1082058‑M2/1‑131 (MQ=255)
            tttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCtt                                                                                                                                  <  1:603238‑M1/22‑1 (MQ=255)
            tGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaa                                                                                                                                  >  2:977494‑M2/1‑129 (MQ=255)
             ttgccgtgacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCttt                                                                                                                                 >  1:272273‑M1/121‑143 (MQ=255)
             gCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCACGAGCCAGGAATGTAAGGAATTCAGAGTTGTTCTTTATTTTGTGCTGggtaatgactcgaag                                                                                                                                 <  1:131355‑M2/143‑16 (MQ=255)
              cTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGACTGTAAGGAATTCAAAATTGTTCTTTATCTTGTGCCGgataatgactccaact                                                                                                                                <  2:208409‑M2/143‑17 (MQ=255)
                  gCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttatt                                                                                                                            >  2:565458‑M2/1‑123 (MQ=255)
                    tCATTGTAGTAATCTCAAACGTATATTGGGGTGGTGTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattga                                                                                                                          >  2:800583‑M2/1‑121 (MQ=255)
                      aTTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgata                                                                                                                        >  2:920067‑M2/1‑119 (MQ=255)
                       gcacaaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAAtt                                                                                                                       >  2:230431‑M1/111‑143 (MQ=255)
                         gtagtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtg                                                                                                                     >  2:329964‑M2/1‑116 (MQ=255)
                         accaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAg                                                                                                                     >  1:659690‑M1/109‑143 (MQ=255)
                          ccaccccgccagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGc                                                                                                                    >  1:745233‑M1/108‑143 (MQ=255)
                           aggaATCTCAAACTAATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtt                                                                                                                   >  1:639422‑M2/1‑114 (MQ=255)
                            gtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttt                                                                                                                  <  2:801228‑M2/143‑31 (MQ=255)
                             taATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTAAGTTGTGAAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTGTGTGCGGggtaatgactccaacttattgatagtgtttt                                                                                                                 <  1:196599‑M2/143‑32 (MQ=255)
                              cccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGa                                                                                                                <  1:598645‑M1/40‑1 (MQ=255)
                                 ctcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgaatacaacttattgatagtgttttaagt                                                                                                             <  1:778690‑M2/143‑36 (MQ=255)
                                   cAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGTATGTAAGGAATTCAAAAGTTTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttc                                                                                                           >  1:267632‑M2/1‑106 (MQ=255)
                                    agtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAc                                                                                                          >  2:979461‑M1/98‑143 (MQ=255)
                                    agtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGACAATAAATATATTTTCATAAAATTGGCCAGACAAGAc                                                                                                          <  2:1049383‑M1/46‑1 (MQ=255)
                                     gtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAcg                                                                                                         <  1:440209‑M1/47‑1 (MQ=255)
                                      tagctgagcaggagagacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAcgc                                                                                                        >  1:1137342‑M1/96‑143 (MQ=255)
                                      aCTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcaga                                                                                                        >  1:289906‑M2/1‑103 (MQ=255)
                                        ttATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacctattgatagtgttttatgttcagata                                                                                                      <  2:785558‑M2/143‑43 (MQ=255)
                                                gggTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccga                                                                                              <  2:921321‑M2/143‑51 (MQ=255)
                                                ggagggagagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTCTCATAAAATTAGCCAGAAAAGACGCGGCATATAGc                                                                                              >  1:155922‑M1/86‑143 (MQ=255)
                                                 ggtggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat                                                                                             >  1:599264‑M2/1‑92 (MQ=255)
                                                          ttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtc                                                                                    >  1:742976‑M2/1‑83 (MQ=255)
                                                           tgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactgtgtca                                                                                   <  2:859971‑M2/143‑62 (MQ=255)
                                                              tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCga                                                                                <  1:526787‑M1/72‑1 (MQ=255)
                                                              tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCga                                                                                <  2:156869‑M1/72‑1 (MQ=255)
                                                                gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgatg                                                                              <  1:353465‑M1/74‑1 (MQ=255)
                                                                 aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgatga                                                                             <  1:888711‑M1/75‑1 (MQ=255)
                                                                    aataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattggtagtgttttttgttcagataatgaccgagggctttgtcgtgcggcgcc                                                                          <  1:9990‑M2/143‑71 (MQ=255)
                                                                     agaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATTTTTTCTTAAAAAAAACCAGAAAAGACGACGCAAATAGCCATATTTACACCGACGATTTc                                                                         <  1:841989‑M1/79‑1 (MQ=255)
                                                                     agaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTc                                                                         <  1:788208‑M1/79‑1 (MQ=255)
                                                                      taGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                                        >  1:538809‑M2/1‑71 (MQ=255)
                                                                      taGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtgcagataatgcccgatgactttgtcatgcagctccac                                                                        >  1:750566‑M2/1‑71 (MQ=255)
                                                                       aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATGTACACCGATGATTTCgc                                                                       <  1:828392‑M1/81‑1 (MQ=255)
                                                                        cgccactggaggacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGTCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgca                                                                      >  1:369515‑M1/62‑143 (MQ=255)
                                                                         agCCTTAAATTCAGTTGTGCAATAGCCAGGCATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccga                                                                     <  2:1017323‑M2/143‑76 (MQ=255)
                                                                            cTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattt                                                                  >  2:524505‑M2/1‑65 (MQ=255)
                                                                             ttAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctacaccgatttt                                                                 <  2:326815‑M2/143‑80 (MQ=255)
                                                                              tggagctcagcaaaaacaccatcagacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGt                                                                >  2:930761‑M1/56‑143 (MQ=255)
                                                                              tggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCCATTTACACCGATGAGTTCGCAGCACGt                                                                <  1:87721‑M1/88‑1 (MQ=255)
                                                                              tAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                                <  1:933562‑M2/143‑81 (MQ=255)
                                                                                gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGa                                                              >  1:566097‑M1/54‑143 (MQ=255)
                                                                                 agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAg                                                             <  1:231935‑M1/91‑1 (MQ=255)
                                                                                   tgagtTGTGGCATAGCCAGGAATGTAAGGATTTCAACCTCGTGCTTTATCGTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaac                                                           >  2:687906‑M2/3‑58 (MQ=255)
                                                                                   cacctgaaaaccaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCTGATATCCCGATTTACACCGATGATTTCGCAGCACGTGAGGt                                                           >  2:518268‑M1/51‑143 (MQ=255)
                                                                                      gTTGTGCAATAGCCGGGAAGGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacgtattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgac                                                        >  2:444452‑M2/1‑55 (MQ=255)
                                                                                      ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaa                                                        <  1:122526‑M1/96‑1 (MQ=255)
                                                                                       ttGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca                                                       >  1:698205‑M2/1‑54 (MQ=255)
                                                                                       ttGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca                                                       <  2:86861‑M2/143‑90 (MQ=255)
                                                                                       tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAACGAAGAGGCATAGAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaa                                                       <  2:1063204‑M1/97‑1 (MQ=255)
                                                                                       tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCGTATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaa                                                       <  1:1144893‑M1/97‑1 (MQ=255)
                                                                                               accatcctacactaaatcagtaagttggtagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTg                                               >  1:494428‑M1/39‑143 (MQ=255)
                                                                                                ccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGa                                              >  1:613081‑M1/38‑143 (MQ=255)
                                                                                                 gCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccg                                             <  1:796270‑M2/143‑100 (MQ=255)
                                                                                                  atcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGAtt                                            >  1:702728‑M1/36‑143 (MQ=255)
                                                                                                    aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgccgctcccccgattttgagaacgacagcgacctccgtcc                                          <  2:33352‑M2/143‑103 (MQ=255)
                                                                                                       acactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGt                                       <  1:1118725‑M1/113‑1 (MQ=255)
                                                                                                       acactaaagcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGt                                       >  1:1118849‑M1/31‑143 (MQ=255)
                                                                                                        aTGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagc                                      >  2:952583‑M2/1‑37 (MQ=255)
                                                                                                         tGTAAGGAATTCAAAAGGGTGCTTTGTTGTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagcc                                     >  1:963342‑M2/1‑36 (MQ=255)
                                                                                                         actaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTca                                     <  2:1149728‑M1/115‑1 (MQ=255)
                                                                                                         actaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTCAAACCTTCCTGCTTCATGtcc                                     <  2:535861‑M1/115‑2 (MQ=255)
                                                                                                           tAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgctcgtgttttatgttcagataatgcccgatgactttgtcatgccgctccaccgatgttgagaacgacaacgacttccgccccagccga                                   <  2:1032059‑M2/143‑110 (MQ=255)
                                                                                                            aaatcagcaagttggcagcaacaccTTGAGCCGCCAATAAATACCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACAt                                  >  1:59037‑M1/26‑143 (MQ=255)
                                                                                                               tcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCCTGTCACAtttt                               <  1:505721‑M1/121‑1 (MQ=255)
                                                                                                               gAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcca                               >  1:322052‑M2/1‑30 (MQ=255)
                                                                                                               gAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcca                               <  1:665401‑M2/143‑114 (MQ=255)
                                                                                                                 ggtaagttgccagcatcaccTTGTGCCGCCAATAAATATCTTTTCACAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGGCCGTGAGATAAAAACTTCCTGATTCATGTCACATTTTAt                             >  2:828392‑M1/21‑143 (MQ=255)
                                                                                                                 attatgttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTCGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTAt                             >  2:1086459‑M1/21‑143 (MQ=255)
                                                                                                                 agtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATACAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGACTCATGTCACACTTTAt                             <  2:264491‑M1/123‑1 (MQ=255)
                                                                                                                  ttCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacaccgacttccgtccccgccgtgcgaggt                            <  2:848323‑M2/143‑117 (MQ=255)
                                                                                                                  ttCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagcgccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggt                            <  1:871466‑M2/143‑117 (MQ=255)
                                                                                                                       ttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGgag                       <  2:738507‑M1/129‑1 (MQ=255)
                                                                                                                          gcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACGTTTTATGgggagact                    <  2:561595‑M1/132‑3 (MQ=255)
                                                                                                                           gTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctca                   >  1:577663‑M2/1‑18 (MQ=255)
                                                                                                                            agcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTAt                  <  1:244535‑M1/134‑1 (MQ=255)
                                                                                                                             tCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcaga                 >  1:199253‑M2/1‑16 (MQ=255)
                                                                                                                                ttATTTTGTGCCGtgtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattc              >  1:60315‑M2/1‑13 (MQ=255)
                                                                                                                                 tATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattca             <  1:760157‑M2/143‑132 (MQ=255)
                                                                                                                                  aTTGTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcag            >  1:596277‑M2/1‑11 (MQ=255)
                                                                                                                                       gtgCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgcttttgcgaccgacagcgacttccgtcccagccgtgccaggtgctgcctcagatccaggttct       <  1:706843‑M2/143‑138 (MQ=255)
                                                                                                                                       ggtccgccAATAAATATGTTTTCATAAAATGAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTgac       <  1:924913/140‑1 (MQ=255)
                                                                                                                                           cGggtaatgattccaccttattgatagtgtttcatgttccgataatgcccgatgactttgtcatgcagctccaccgattttgagaacgccagagatttccgtcccacccgtgccaggtgctgcctcagattcaggttatgccg   >  2:1131743‑M2/1‑2 (MQ=255)
                                                                                                                                            gccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACAACGATGATTTCGCAGCACGCGAGGATAAAACTTCCTGATTCATGTCACATTATATGGGGAGATTATCGTAGGCTGACGACCt  >  2:272580/1‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                              
CAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCT  >  NC_000913/1292899‑1293181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.