New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 285874 =73 (0.740)3 (0.030) 3/414 NT 4.3% coding (480/1383 nt) yagG CP4‑6 prophage; putative sugar transporter
?NC_000913 285896 = 64 (0.670)coding (502/1383 nt) yagG CP4‑6 prophage; putative sugar transporter
Rejected: Frequency below/above cutoff threshold.

TGGGGGGCCATCCCGTTCGGCATCGTCTGCGTGCTGACCTTCTACACGCCGGACTTCTCCGCACAGGGCAAGATCATCTACGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCCGGGCTCGTCGGTGGCGAAAGACCTTAAGCTGCTGCTGGGCAACAGCCAGTGGCGCATCATGTG  >  NC_000913/285641‑286092
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                          
tgGGGGGCCATCCCGTTCGGCATCGTCTGCGTGCTGACCTTCTACACGCCGGACTTCTCCGCACAGGGCAAGATCATCTACGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCg                                                                                                                                                                                                                        >  1:70125/1‑238 (MQ=255)
  gggggCCATCCCGTTCGGCATCGTCTGCGTGCTGACCTTCTACACGCCGGACTTCTCCGCACAGGGCAAGATCATCTACGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTTTCAGCgg                                                                                                                                                                                                                       >  1:4667/1‑237 (MQ=255)
  gggggCCATCCCGTTCGGCATCGTCTGCGTGCTGACCTTCTACACGCCGGACTTCTCCGCACAGGGCAAGATCATCTACGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCa                                                                                                                                                                                                                     >  1:922378/1‑239 (MQ=255)
   gccacgttggcgcagttcgccatcatcttgaacgcgcacatgatgcgccactggctgttgcccagcagcagcttaaggtctttcgccaccgacgagcccggctgcacctcaaaggtgtagcgctctttggtcgtgaagaagcagacgtagagcagcaccacgccgctcagccccagcacgcacatggcgccgaagtagcccacctgctcgtcccctttgccgatgatgctcacCAGCgg                                                                                                                                                                                                                       >  2:345553‑M1/234‑239 (MQ=255)
        cATCCCGTTCGGCATCGTCTGCGTGCTGACCTTCTACACGCCGGACTTCTCCGCACAGGGCAAGATCATCTCCGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTTCTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCgcgc                                                                                                                                                                                                               <  1:332704/239‑1 (MQ=255)
                tCGGCATCGTCTGCGTGCTGACCTTCTACACGCCGGACTTCTCCGCACAGGGCAAGATCATCTACGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCACGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTg                                                                                                                                                                                                       <  1:668447/239‑1 (MQ=255)
                          cagCGTGCAGGCCTTCTACACGCGGGCCTTCTCCGCGCAGGGCAAGATCATCTACGCCTGCGTGACCTACATTCTCCGGCCCCTGGTCTACACCTTCTTCAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGcatca                                                                                                                                                                                             <  2:186773/237‑1 (MQ=255)
                              ttgaacgcgcacatgatgcgccactggctgttgcccagcagcagcttaaggtctttcgccaccgacgagcccggctgcacctcaaaggtgtagcgctctttggtcgtgaagaagcagacgtagagcagcaccacgccgctcagccccagcacgcacatggcgccgaagtagcccacctgctcgtcccctttgccgatgatgctcacCAGCGGCAGCGCGATGCCGCTGGTGAGcatcat                                                                                                                                                                                            >  1:528909‑M1/207‑239 (MQ=255)
                                 cggACCTGCTCCCCGCCGACTTGCCCGCAGCGGGGCACTATCATCACCGCCTGCGGGACGTCGTTCCTCCTGTCCAGGGTCTACGCCTCGGTTAAGTGGCGGACTTGCGCCATGCCGGCGGCCAGCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTGTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCAGCGCGCTGCCGCTGGTGAGCATCATCGGCaa                                                                                                                                                                                      <  2:4667/237‑1 (MQ=255)
                                      cTTCTACACGCCGGACTTCTCCGCACAGGGCAAGATCATCTACGCCTGCGTGACCTCCATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAgggg                                                                                                                                                                                 <  1:148506/239‑1 (MQ=255)
                                              cGCCGGACTTCTCCGCACAGGGCAAGATCATCTACGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCCTCGGCCAAGGGGACGAGCAg                                                                                                                                                                         >  2:1055273/1‑239 (MQ=255)
                                                   gACTTCTCCGCACAGGGCAAGATCATCTACGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTg                                                                                                                                                                                                       >  1:454336/1‑204 (MQ=255)
                                                     cgccgccGCACGGTGCAAAATGATCGCGCCTGCCGGGACCTCCAGCCCCCTGACCCTGGTCTACCCCTTCGTTACGGGGCCGTGCTGCGCCAGGCCGGCCGTCGCCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTCCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGc                                                                                                                                                                   <  2:549028/233‑1 (MQ=255)
                                                           cGCACAGGGCAAGATCATCTACGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCCTCGCGCTGCCGCTGGTGGGCATCATCGGCAAAGGGGACGAGCAGGGGGGCTACTCCg                                                                                                                                                            >  2:181287/1‑239 (MQ=255)
                                                           cGCACAGGGCAAGATCATCTACGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCg                                                                                                                                                            >  1:970666/1‑239 (MQ=255)
                                                           cGCACAGGGCAAGATCATCTACGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGGGGGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCg                                                                                                                                                            >  2:214724/1‑239 (MQ=255)
                                                                   ggCAAGATCATCTACGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCCTCCTCGGCAAAGGGGACGGGCAGGTGGGCTACTTCCgccc                                                                                                                                                        >  2:530169/1‑234 (MQ=255)
                                                                   ggCAAGATCATCTACGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAt                                                                                                                                                     >  1:736700/1‑239 (MQ=255)
                                                                        gATCATCTACGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCATACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATgtgcg                                                                                                                                                >  1:930089/1‑239 (MQ=255)
                                                                           catcTACGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATgtgcgtgc                                                                                                                                             <  1:847992/239‑1 (MQ=255)
                                                                             tcTACGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTg                                                                                                                                           >  1:1038646/1‑239 (MQ=255)
                                                                                   ccTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCGGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTg                                                                                                                                     >  1:1066977/1‑239 (MQ=255)
                                                                                        cGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAgcg                                                                                                                                 >  2:119911/1‑239 (MQ=255)
                                                                                           tcccacgcttCTCCGGTCCCTGTGCTCCCCCTTCGTTAGCGGGCCGTACTGGCCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAgcggcg                                                                                                                              <  2:989136/231‑1 (MQ=255)
                                                                                           gACCTTCATTCCCCTGACCGTGGTCGACCCCTCCGTGAACTGTCCCTACGGCGCCATGCCGGGGGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCTGCGGCGGGCTCGCTCTCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAgcggcg                                                                                                                              <  2:428993/239‑1 (MQ=255)
                                                                                           gACCTACATTCTCCTGCCCCTGGTCTACCCCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAgcggcg                                                                                                                              <  1:999967/239‑1 (MQ=255)
                                                                                            atcTACATTCGCCCGACCCGGGCGTCGACCTTCGTGAACGTGCCGTTCTGCGCGTTCCCGGCCGCCATCGCCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCGTCTGCCGGGCGGCGGCGGGCTCGCGCGCTATCAGCGGCCGCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAgcggcg                                                                                                                              <  2:80499/236‑1 (MQ=255)
                                                                                              cTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGGGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGCGCTGGGGCGGGGCGGCgtgg                                                                                                                           >  2:497428/1‑239 (MQ=255)
                                                                                               tctcttcctcggACCCTGGTCTCCACCTCCTTTACCGTGCCGACATCCACGAGTCCGGGGGGCATCAACGCCAACCCGCAAGAGCGGCACGCCCTGCACACCTGGCGCATCTTCCTGGCGGCGGCGGGCTCGTTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGGGCACGTGGGCTACTTCGGCGCCAAGTGCGTGCGGGGGCTGAGCGGCgtggt                                                                                                                          <  2:1083310/228‑1 (MQ=255)
                                                                                                    tctcCTGACCCTGGTCTACCCCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGtgctgc                                                                                                                     <  1:181287/239‑1 (MQ=255)
                                                                                                      tcCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTg                                                                                                                                                                                                    >  2:1003377/1‑158 (MQ=255)
                                                                                                      tcCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTg                                                                                                                                                                                                    <  1:1003377/158‑1 (MQ=255)
                                                                                                       ccTGACCCTGGTCTCCCCTTTCGTTAACGTGCCGCACTGCGCCATGCCGGGCTTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGctct                                                                                                                  <  2:996960/239‑1 (MQ=255)
                                                                                                       ccTGACCCTGGTCTCCACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGctct                                                                                                                  <  1:724378/239‑1 (MQ=255)
                                                                                                        cTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCCCGCTCGCTATCAGCGGCATCGCGCCGCCGCTGGTGCGCATCATCGGCAGAGGGGACGAGCAGGTGGGATACTTCGGCGCCATGCTCGGGCTGGGGCTGAGCGGCGTGGTGCTGctct                                                                                                                  >  2:602797/1‑238 (MQ=255)
                                                                                                           aCCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTgg                                                                                                                                                                                                      <  1:535243/151‑1 (MQ=255)
                                                                                                           aCCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTgg                                                                                                                                                                                                      >  2:535243/1‑151 (MQ=255)
                                                                                                           aCCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACg                                                                                                               >  1:902129/1‑238 (MQ=255)
                                                                                                           aCCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACg                                                                                                               >  1:1128801/1‑238 (MQ=255)
                                                                                                           aCCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGAATCATCGGCAAAGGGGACGAGCAGGGGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGt                                                                                                              >  1:967218/1‑239 (MQ=255)
                                                                                                                ggTCTACACCTTCGTTAACGTGCCGTACTGCGCCCTGCCGGGCGTCATCACCGCCGACCCGAAAGCGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTCGCGGCGCCGGGCTCGCTCGCTATCACCGGCATCGCGCTGCCGCTGGAGAGCATCATCCGCAAACGGGACGAGCAGCTGGGCCCCTTCGGCCCCAGGTGCGTGCTGGGGCTGAGGGGCGTGGTGCCGTCCTCCGTCTGct                                                                                                         >  2:1144957/1‑239 (MQ=255)
                                                                                                                ggTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACtt                                                                                                                                                              >  1:979756/1‑186 (MQ=255)
                                                                                                                ggTCTACACCTTCGTTAACGTGCCGGACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGCGCTTCACCGGCAAAGGGGACGGGCAGGAGGGCTACTTCGGCGCCCTGTGCGTGATGGCGCTTAGCGCCGAGTTGGTGGCCTTCGgctgct                                                                                                         >  2:1018253/1‑239 (MQ=255)
                                                                                                                 gTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGct                                                                                                         >  1:996960/1‑238 (MQ=255)
                                                                                                                 gTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGc                                                                                                          >  2:139545/1‑237 (MQ=255)
                                                                                                                 gTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGc                                                                                                          <  1:139545/237‑1 (MQ=255)
                                                                                                                      caccgtgttaaaCGGGCCGGCCGGCGCCAGGCCGGGGGTCGCCGCCGCCGACCCGAAAGGGCGTCACGCCCTGCAGTCCTGGCGCGTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCACTGCCGCTGGTGAGCATCATCGTCAAAGGGGGCGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCa                                                                                                   <  2:620802/229‑1 (MQ=255)
                                                                                                                      cacCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCTTCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGACGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGGGCTGCTCTACGTCTGCttcttc                                                                                                    >  1:940167/1‑238 (MQ=255)
                                                                                                                           tCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGAcc                                                                                              >  1:801868/1‑239 (MQ=255)
                                                                                                                           tCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGCCGCTTCTTCATGGCGGCGGCGGGCTCGCCCGCTATCAGCGGCATCGCGCTGCCGCTGCAGAGCCTCATCCGCAAACGGGACGCGCAGGGGGGCTACTTCGTGGCCGTGTGCGTGCTGGGGCTGAGCGGCGCGGCGCTGCTCTACGTCTCCTTCGTCTCGAcc                                                                                              >  2:570869/1‑239 (MQ=255)
                                                                                                                              ttACCGTGCCGTACTGCGCCATGCCGGCCTGCAGCCCCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCGGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCaaa                                                                                           <  2:930089/239‑1 (MQ=255)
                                                                                                                                aaCGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCCGGTGACCATCATCGGCAAAGCGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTCGGGCTGCGCGGCGTGGTACTGCTCTAGGTCTGCTTCCTCACGACCcaac                                                                                          >  2:521207/1‑237 (MQ=255)
                                                                                                                                 aCGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAagag                                                                                        <  1:1050878/239‑1 (MQ=255)
                                                                                                                                  cGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAgc                                                                                       >  1:78233/1‑239 (MQ=255)
                                                                                                                                   gTGCCGTACTGCGCCATGACGGGCGTAATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCACCGGCATCGAGCTGCCGCTGGAGAGCAGCATCGGAAAAAGGGGCGAGCACGTGGGCTACTTCGGCGCCATGTGCGTGCTGAGGCTGAGCGGCGTGGAGCTGTTCTACGTCTGCTTCTTCACGAccgacaagc                                                                                       >  2:882984/1‑231 (MQ=255)
                                                                                                                                      ccGCACTGCGCCAGGCCGTGCGTCCCCACCGCCGACCCGAAAGAGCGTCCCGCCCTGCAGTCCTGGGGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTa                                                                                   <  2:685185/239‑1 (MQ=255)
                                                                                                                                       cGTCCTGCGCCAGGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTa                                                                                   <  1:127796/238‑1 (MQ=255)
                                                                                                                                        gTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTac                                                                                  >  1:882935/1‑238 (MQ=255)
                                                                                                                                        cggacggcgcGAGGCCGGGCGGCAGCACCGCCGACCCGAAAGAGCGGCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTa                                                                                   <  2:624653/232‑1 (MQ=255)
                                                                                                                                               cgcCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTg                                                                           >  1:929366/1‑239 (MQ=255)
                                                                                                                                               cgcCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCGCGCTCGCTATCAGCGGCCTCGCGCTGCCGCTGGTGAGCATCATCGGCACAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTg                                                                           >  2:1117396/1‑239 (MQ=255)
                                                                                                                                               cgcCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCCCGCTCGCTATCAGCGGCATCGCCCTGCCGCTGGCGAGCATCATTGGCAAAGGGGAGGAGCAGGTGGGCCACTTCGGCGCCCCGTCCGCGAGGGGGCTGAGCGGCGAGGTGCTCCTCTACGCCTGCTTTTTCACGACCAACGCGTCCTACACCCTTg                                                                           >  2:893744/1‑239 (MQ=255)
                                                                                                                                               cgcCATGCCGGGCGGCATCACCGCCGACCCGAAAGAGCGTCACGCCCGGCAGTCCGGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCAGCATCCGCAACGGGCACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGTGTCTGAGCGGCGTGGTGCTGCAGTCCGTCGGCTTCTTCACGCCGAAAGAGCGCTCAAACTTTg                                                                           >  2:1142426/1‑239 (MQ=255)
                                                                                                                                                               accacgccgctcagccccagcacgcacatggcgccgaagtagcccacctgctcgtcccctttgccgatgatgctcacCAGCGGCAGCGCGATGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTggg                                                                                                                                                                    <  1:961643‑M1/57‑1 (MQ=255)
                                                                                                                                                               accacgccgctcagccccagcacgcacatggcgccgaagtagcccacctgctcgtcccctttgccgatgatgctcacCAGCGGCAGCGCGATGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTggg                                                                                                                                                                    >  2:961643‑M1/78‑134 (MQ=255)
                                                                                                                                                                           ccGCAAGGGCGTCACGCGCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCCGCGTCATCGCGCTGCCGCTGGTGAGCATCCTCGGCAAAGGGGACGAGCAGGTGGGTTACTTCCGCGCCATGGGCGTGCTGGGGCTGAGCGGCGTGGTGCCGCTCTTGGTCTGCTTCTCCACGGCCAAAGAGCGCTACACCTTTGAGACGCAGCCGTGCTCGCAGgcggcgca                                               >  2:494304/1‑237 (MQ=255)
                                                                                                                                                                           ccGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCCGGGCTCGTCGGTGGCGaa                                               <  1:119911/239‑1 (MQ=255)
                                                                                                                                                                            cGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCCGGGCTCGTCGGTGGCGaaa                                              <  2:1038646/239‑1 (MQ=255)
                                                                                                                                                                                    cGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGAGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGCGCCGGTGGGCTACCTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGTTGCTCTACGTCTGCTTCTTCACGACCAAAGTGCGCTACACCTTTGAGGTTCCGCCGGGCGCGTCGGTGGCGCACGACCTTaa                                      >  2:601581/1‑239 (MQ=255)
                                                                                                                                                                                     gTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCCGGGCTCGTCGGTGGCGaa                                               <  2:705002/229‑1 (MQ=255)
                                                                                                                                                                                     gTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCCGGGCTCGTCGGTGGCGaa                                               >  1:705002/1‑229 (MQ=255)
                                                                                                                                                                                             ctggaattcTGTCGCCTCTTTCTGGCGGCGGCGGGCTCGGGCGCTGGCAGCGGCATCGGGCTGCCGCTTGTGAGCATCATCGGCAAAAGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTGCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCCGGGCTCGTCGGTGGCGAAAGACCTTAAgctgctgct                             <  2:967218/231‑1 (MQ=255)
                                                                                                                                                                                             cTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCCGGGCTCGTCGGTGGCGAAAGACCTTAAgctgctgct                             <  2:78233/239‑1 (MQ=255)
                                                                                                                                                                                                cAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCCGGGCTCGTCGGTGGCGAAAGACCTTAAGCTGCTGCTgg                           >  1:640088/1‑238 (MQ=255)
                                                                                                                                                                                                            gtctgcCGGGCGGCGGCGGTCGCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAATGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCGGGGCTCGTCGGTGGCGAAAGACCTTAAGCTGCTGCTGGGCAACAGCCAGt               <  2:929366/237‑1 (MQ=255)
                                                                                                                                                                                                             tcttcCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCCGGGCTCGTCGGTGGCGAAAGACCTTAAGCTGCTGCTGGGCAACAGCCAGTg              >  1:441709/1‑238 (MQ=255)
                                                                                                                                                                                                             tcttcCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCCGGACTCGTCGGTGGCGAAAGACCTTAAGCTGCTGCTGGGCAACAGCCAGTg              >  1:1006111/1‑238 (MQ=255)
                                                                                                                                                                                                                         gggcggGCTAGATGGTGATCAGCGGCAGCGCGCTGCCGGTGGGGAGCAGGACCGGAAGAGGGGGCGGGCAGGTGGGTTGCTTCGGGGCCATGTGCGTGCTGGGGCTGAGCGACGTGGTGCTGGTCTGCGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCGGGCGGGCTCGTCGGTGGCGAAAGCCCTTAAGCTGCTGCTGGGCAACAGCCAGTGGCGCATCAtgtg  <  2:940167/237‑1 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                          
TGGGGGGCCATCCCGTTCGGCATCGTCTGCGTGCTGACCTTCTACACGCCGGACTTCTCCGCACAGGGCAAGATCATCTACGCCTGCGTGACCTACATTCTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCCGGGCTCGTCGGTGGCGAAAGACCTTAAGCTGCTGCTGGGCAACAGCCAGTGGCGCATCATGTG  >  NC_000913/285641‑286092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.