| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,206,469 | A→G | 15.5% | S3G (AGC→GGC) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,206,469 | 0 | A | G | 15.5% | 109.5 / 3.4 | 59 | S3G (AGC→GGC) | ttdA | L‑tartrate dehydratase, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base A (11/37); new base G (5/4); total (16/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.87e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
CTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAA > NC_000913/3206235‑3206707 | cTAAAGGCCAGCTATTCAACATCGTTAATTATCCGCAGTTGTGATAAGCGCTGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCg < 2:863546/238‑1 (MQ=255) tAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGa < 1:1050312/238‑1 (MQ=255) tAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGa < 2:129307/238‑1 (MQ=255) tAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGa < 2:312911/238‑1 (MQ=255) tAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGa < 1:457267/238‑1 (MQ=255) tAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACAGTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGa < 1:256212/238‑1 (MQ=255) cAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGtaat < 1:468824/238‑1 (MQ=255) aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAgg < 2:24839/236‑1 (MQ=255) aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAgg < 2:1116517/236‑1 (MQ=255) aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACAATT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAgg < 1:9159/236‑1 (MQ=255) tCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTTTA‑GACAAATACAAAAAATGGGGTTGCCATGATTAAGGGAAGGAATAAACAAAAGGCAGt > 1:184062/1‑239 (MQ=255) tCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGGTAAGTTTTCTC‑GTCAAAAAAAAAAAATGGAGGTGGCATGAGAGGCGGAAATAATAAACaaaacagaag > 2:943734/1‑231 (MQ=255) ttAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTTGATTTTTTCC‑GACAAAAACAAAAAATAGAGGTGCCATTGTTGGCGGAAATAAAAAACAACAAGCacggga > 1:1095243/1‑234 (MQ=255) aGCGCAGTGTATTACGCAAAACATTGCCATTCCCTGCTCTGCCGCATTATTCATTCTTATTTTCGTTTTGATTCACGAACTGTTAATTAAATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGGGGCGGGGAATTTTTCCA‑GACAAAGACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGAGTGTCGCt < 2:302195/239‑1 (MQ=255) tATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑aa < 1:331930/208‑1 (MQ=255) ttCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAAATTTTTCC‑GACAAATACAAAAAATGGAGTTGTCCTGATGAGAGAAAGGAAAAAACAACAAGCAGGG‑AATAAGTTTACAGAGATTGTTGCTAACTTTAACGc > 1:906499/1‑238 (MQ=255) gccaaaaaatttGCCATTCCATTCTGTGGCGAAAAATTCATTTTTAGTCTGGTGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCCCTATT‑TTAGTGAAAGTTAGTGGGGGGAAATTTTCCAA‑TACAAATACAAAATGTGTAGTTGCGTAAATGGGCAAAAGTAATAAGAAACAGGAGGAT‑TCTAAGTTGTGAGGATTTTTCGTTAACTTTACCGCCa < 2:586948/229‑1 (MQ=255) tGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGGGAAATTTTTCA‑GAAAAAAAAAAAAAAATGAGGTTGCATGATTAGGGAAAGTAATAAACAACACACAGAG‑AAAAAAGTTACAGAGATTTTTTCTTACCTTTCCGCCATGAttttcta > 2:60242/1‑234 (MQ=255) gCCATCCCCTGCCCTGGCGCAATATTCATTCTTATTTTCGCTTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGTTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATAAAAAAACGGGAGTTGCAATGATGAGAGAAAGTAATAAGAAACAGGCAGTA‑AATAAGTTGAAAGAGATTGTCGCTAATTTTACCGCCATGATTTCTAccc < 1:1142186/239‑1 (MQ=255) tcccttGCTCTGGCGCATTATTCAGTCTTATTTTCGCGTTGATTCACGACCTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCATATTT‑TTAGTGGTTTGTTTTGGCGGTGATTTTTTCAA‑GAAAAATACAAAACTGGGAGTTGCCATGAGGTGCAAAATTAATAAGCAACAGGAAGTG‑AATAAGTGGACAGAGATTTCCGATAACTTTACCGCCATGATTTCTACCCGAAt < 2:1106716/234‑1 (MQ=255) cccTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTTCA‑GACAAATAAAAAAAATGGAGGTGACATTATTGGCGGAAGGAATAAGGAAACAGCAGGG‑AATAAGTTGAGAAAGGTTGTTGCCTACTTTATCGCCCCGAttttttacccaatg > 1:1109367/1‑227 (MQ=255) ccggCTCTGGCTAAAATTTCATTCTTATTTCCGATTTAATTAACGAAGTTTTAATTAAATATTCACGGTGGAAAAAAATAAAAAACCACATTT‑TTAGTGGTATTTTGTGGTGTTAAATTTTTCAA‑GACAAATAAAAAAACGGGAGTTGCCATGATGGGCTAAAGTAATAAGCAACAGCCATTG‑AATAAGTTAACAGGGATTGTCGTTAACTTTACCGCCATGATTTCTACCCGAATGcc < 2:497370/236‑1 (MQ=255) tatTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGGGGTGAATTTTTCCA‑GAAAAATACAAAAACTGGAGTTGCCATGATGAGAGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa < 1:943734/239‑1 (MQ=255) cattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAAATTTTTCA‑AACAAATACAAAAAAAAGAGGTGCCATGATGAGCGAAAGGAATAAAAAACAGGCAGAG‑AATAAGTTGAAAGAGATTGTCGCTAACTTTACCGCCAATATTTCTAACCCAATGCCTGATGACGCGGGGGGTaaa > 1:719784/1‑239 (MQ=255) ttATTTTCGCGTTGATTCACGAACTTTTAATTACATATTCACGGTGGAAAAAAATAAAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GAAAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaa < 1:60242/239‑1 (MQ=255) ttATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTCCCA‑GACAAATACAAAAACGGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaa < 1:353221/239‑1 (MQ=255) tATTTTCGCGTTGATTCACGAATTTTTAATTACATATTCACGGTGGCAAAAAATAAAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAAAAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTTTCGCTAATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa < 1:87828/239‑1 (MQ=255) tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAAATTTTTCA‑GACAAATAAAAAAAATGGAGGTGGCATGATGAGCGGAAGGAATAAGCAAAAAGGAGAG‑AATAAGATGAAAGAGATTTTGGCTAAATTTTACGCCCTGATTTCTTACCCAAAGCCTGAGTAAGGGGGGGGAAAACTaaaa > 1:964194/1‑239 (MQ=255) tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGAGAATTTTTTCA‑AGCAAAAATAAAAACTGGAGTTGCCGTGATGGGGGAAAGGAATAAACAAAAAGAAGGGAAATAAATGGA‑AGAAATTTTCGCTTAATTTACCCCCCTGATTTTTTCCCGGAAGACTGATTACGTTGGGGGTAAACAaaaa > 1:142788/1‑239 (MQ=255) aatttcggtcttGCTTCCCAAATTGTAAATTACATTTTCCGGGTGGAAAAAATAAAAAAACCACTTTT‑TTAGGGGTAGTTTGGGGCGGTGAATTTTTCCA‑GACAAATAAAAAACCGGGAGTTGCCATGATGAGCGAAATTAATAAGCAACAGGCAGTA‑AATAAGTTGACAGAGATTGTCGCAAATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa < 2:780063/229‑1 (MQ=255) tGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GAAAAATACAAAAACTGGAGTTGCAATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa < 1:57911/218‑1 (MQ=255) tGATTCACAAACTGTTAATTACATATTCACGGTGGAAAAAAAAAAAAAACCACATTT‑TTAGTGTTATTTTGTGGCGGTAATTTTTTCCA‑AACAAATACAAAAACTGGAGTTGCCATAATGAGCAAAAGTAATAAGCAACGGGGAGTA‑AATAAGTTAACAGAGTTTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGa < 1:193005/239‑1 (MQ=255) caaaCTGTGAATTACATATTCACGGCGGAAAAAAAAAAAAAACCACATTT‑TTAGTGGTAGTTGGTGGCGGGGAATTTTTCAA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAATTAATAAACAACAGGCAGTA‑AATAGGTCGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGaa < 1:859525/237‑1 (MQ=255) cttttAATTGCATTTTCCGGGTGGAAAAAAAAAAAAACCCACATTT‑TGTGGGGTAGTGTGGGGGGGTGATTTTTTCCA‑GAAAAAAAAAAAAACGTGAGTGGCCATGAGGAGCGAAAGTAATAAGCAAAAGGCAGTG‑AATAAGTTGACAGAGATTGTCGTTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAAcgt < 2:906499/236‑1 (MQ=255) gTTAATTACATATTCACGGGAAAAAAAAATATAAAACCACATTT‑TTGTGGGTAGTTGTTGGCGGTTAATTTTTCAA‑AACAAATACAAAAACTGGAGTTGCCAGGTGGAGCAAAAATAAAAAGCACTAGGCGTTA‑AATAAGTGGAAAGAGATTGTCGTTATCTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAAcgtcg < 2:964194/239‑1 (MQ=255) ttAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTTCA‑GAAAAAAAAAAAAAATGGAGGTGCCATGATGAGCGAAAGTAATAAACAACAAGCAGTG‑AATAAAGTTACAGAGATTGTCGCTAACTTTACCGCCATGATTTTTTACCGAATGCATGTTGACGTGGTGGGTAAAATAAAAAAACTAAAAGATGGCGCAAcgtcg > 1:925507/1‑238 (MQ=255) aaTGACATGTTCCCGGTGGAAAAAAATAAAAAACCACATTT‑TAGGGTGTAGTTTGGGACGGTGAATTTTCCCA‑AAAAAATAAAAAAACTGGAGTTCCAGTAATGCGCAAAAGTAAAAACAAACGGGCAGTA‑AATAATTGGACAGAGTTTGCCTCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGtcgtcg < 2:142788/239‑1 (MQ=255) ttACATATTCGCGGGGGAAAAAAATAAAAAACCACATTT‑GTATTGGTGTTTTGTGGCGGTGAATTTTTCCA‑AAAAAAAAAAAAACCGGGAGTTTCAATGAAGAGAAAAAGTAAAAACAAAGGGGCAGTA‑AATAATGGGAAAGAGTTGGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGtcgtcg < 2:872854/237‑1 (MQ=255) atatTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTTCA‑AACAAAAATAAAAAAATGAGTTGTCATTATGGGAGAAAATATAAAAAAACAGGAAGTG‑AAAAAAGTGACAGAGATTGTCGCTAACTTTACACCCCAGATTTTTACCCACACACCTGTTGACATGGGGGGTGAAATCAAAAAGCTAAAAGATGCGGGAAACTCCTAGATgggg > 2:392203/1‑239 (MQ=255) tatTCAGGGTGGAAAAAAAAATAAACCCATTTTT‑TGAGTGGTGGTTTGGGGCGGTCAATTTTGCCA‑AAAAAAAAAAAAAACGGGAGTTACAATGATGGGAGAAAGTAATAAGCAAGAGGCACTG‑AAAGCGTGGAAAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa < 1:827442/239‑1 (MQ=255) tatTCACGGTGGCAAAAAATATAAACCCACATTT‑TTAGTGGTAGTTTGTGGCGGTGATTTTTACCA‑GACAAAAACAAAAACTGGAGTTGCCATGATGAGAGAAAGTAATAAGCAACAGGCAGTA‑AATAAGTTGAAAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa < 1:662820/239‑1 (MQ=255) tatTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa < 1:903447/239‑1 (MQ=255) atTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGGGAATTTTTCCACAACAAAAAAAAAAAATGG‑GTTTGCATGATGAGGAGAAAAAATAAAAAACAGGCAGTG‑AATAAGATGATAGAGAATGTCGCTAACTTTAACGCCATGATTTCTACCCCAATGGCTGGTGACGGGGGGGGTAAACTCAAAAAAATAAAGGGAGCCGAAAAGGAGTCGGTgggggg > 2:183559/1‑237 (MQ=255) gacACGGTGGCAAAAAAAAAAAAACAAAATTT‑TTATGGGTAGTGTGTGGGGGTGAATTTTTCAA‑GCAAAATAAAAAATCTGGAGTTGCAATGAGGAGAGAAAGTAAAAAGCAACAGGCAGTG‑AATAAGTTGACAGAGTTTGTCGTTAATTTTTCCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa < 2:719784/235‑1 (MQ=255) cACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTTCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGAAACAGGCAAGG‑AATAAGATTACAGAGAATTTCGCTTACTTTACCGCCATGATTTTTACCCGAAAGCCCGATGAGGTGGGGGATAAACTAAAAAAACTAAAAGAAGCCCGAAAGTCGTCGATGGGGGAAAt > 1:871285/1‑239 (MQ=255) tggaaaaaaaaTAAAAAAAC‑CATTTGTTGTTGGTGGTGTGTGGGGGTAAATTTTTCGA‑AACAAAAACAAAAACTGGAGTTACTATGATGGGCGAAATAAATAAGCAACAGGAAGTT‑AATAAGTTCATACAGATTGTCGCTAATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACTTCGTCGATGGGGAAAATTAt < 2:174226/233‑1 (MQ=255) tGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTTCC‑GAAAAAAAAAAAAAATTGAGTTGCCCTGATGAGCGGAAGGAATAAACAAAAGGCCGTG‑AATAAGTTGACAGAGATTTTCGCTAACTTTACCGCCATGATTTTTTCCCGCAAGCCTGATGAAGGGGGGGGTAAACTAAAAAAGCTAAAGGATGCCGGAAAGTCGTCGCTGGGGGAAATTATCt > 1:832264/1‑239 (MQ=255) gaaaaaaaaaaaaaCCCACATTT‑TTAGTGGTAGTTTGGGGCGGTGAATTTTTCAA‑GAAAAATAAAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGGA‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTa < 1:1111938/236‑1 (MQ=255) gCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTTCA‑GACAAAAAAAAAAAATGGAGTTGCCATGATGAGCGGAAGTAATAAACAACAGGCAGTG‑AATAAAATTACAGAGATTGTAGCTAACTTTAACGCCATGATTTCTTCCCGCATGCCTGATGACGGGGTGGGTAAAATAAAAAAGCTAAAAGAAGGCGAAACGTCGTCGGTGGGGGAAATtatata > 1:1148268/1‑238 (MQ=255) tataAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATggg < 1:691234/218‑1 (MQ=255) taAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTTCA‑GACAAATACAAAAAATGGAGTTGCCATGATGAGCGAAAGTAATAAACAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCCAAAGCCTGATGACGGGGGGGGTAAAATAAAAAAGCTAAAGGATGCCGAAACGTCGTCGATGGGGGAAAATATTTACCATACCATGt > 1:258223/1‑239 (MQ=255) aGTTTGTGGGGGAGAATTTTTCCA‑AAAAAATAAAAAAACTGGAGTTGCAATGAGGAACGAAAGAAATAAGCAACAGGCGGTA‑AAGAAGTGGACAGATATTGTCGTAAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa < 2:493407/239‑1 (MQ=255) aGTTGGTGGAGGTAAATTTGACAA‑CAAAAATACAAAAACTGAAGTTGCCATGATGAGCGAAAGGAATAACAAACAGCCAAGA‑AATAAGTTGACTGAGATTGTCGCTACCTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa < 2:533339/239‑1 (MQ=255) tttGTGGCGGTGAATTTTTCCA‑GAAAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGAAATAAGCAACAGGCAGTA‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATa < 1:113038/210‑1 (MQ=255) tttCCA‑GACAAATACAAAAACGGGAGTTGCCATGATGAGCGAAAGTAAAAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctg < 1:796851/239‑1 (MQ=255) gtgccA‑AACAAAGAAAAAAACTGGAGTTGCCATAATGAGCGAAAGAAAAAAACAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGTAAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctg < 2:363770/236‑1 (MQ=255) actgggAGTAGCAATTAGGAGCGAAAGAAATAGGCAACAGGAAGGA‑AATAAGTTGACAGAGATTTCCGCTAATTTCACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg < 2:756761/235‑1 (MQ=255) aaCGGGAGTTGCCAAGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AAAAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg < 1:733907/239‑1 (MQ=255) aaCGGGAGGTGCCATGATGAGCGAAAGTAATAATCAACGGGCAGTA‑AATAATTTACCAGAGTTTGTCCCTAATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg < 2:925507/239‑1 (MQ=255) aGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGAACTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTaa > 1:1074648/1‑239 (MQ=255) | CTAAAGGCCAGCTATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTT‑TTAGTGGTAGTTTGTGGCGGTGAATTTTTCCA‑GACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAA > NC_000913/3206235‑3206707 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |