| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,151,329 | T→G | 31.2% | A590A (GCA→GCC) | ppc ← | phosphoenolpyruvate carboxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,151,329 | 0 | T | G | 31.2% | 78.3 / 3.4 | 62 | A590A (GCA→GCC) | ppc | phosphoenolpyruvate carboxylase |
| Reads supporting (aligned to +/- strand): ref base T (29/7); new base G (7/14); total (37/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.83e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTT > NC_000913/4151094‑4151565 | ggTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTgcg < 1:1188548/239‑1 (MQ=255) cGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGCGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGG‑TGTGACCACAGCCCC‑GCATGAGCCGGGGCG‑CCGC‑cgcg > 1:93919/1‑238 (MQ=255) aGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCTTTTCAGGCTTCCTGGCGGG‑TGTGACAGCAGCGCC‑GCATGAGCAGGGGCG‑CCGC‑CGCGAccc > 2:1079390/1‑238 (MQ=255) aGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CCCGACCa > 1:103604/1‑239 (MQ=255) gagaTGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TTTGACAGCAGCGCC‑GCATGAGCAGGGGCG‑CCGC‑CGCGACCA‑At > 1:1157237/1‑239 (MQ=255) gactgacAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGGGCG‑CCGC‑CGCGACCA‑ATGGaa > 1:385862/1‑238 (MQ=255) taGTTCCGCCATAGGGCGACGCCGGCTTTTTTTCGGCGGCGGGGGGGGCGGCAGGTTGGCTCCCAGACCCGCCCCGGTAAAAGGCGACAGGCTGCGGGGGGTTTTTTCTGGCAGACCATATTTAAAGCGGATCATCCCGCCCTTTT‑CGTTTA‑CGCGCGGCCC‑GCTTTTCAGGCTTCCGGGCGTT‑TGTGACAGCAGCGCC‑GCAGGAGCGGGGGCG‑CCGC‑CGCGCCAA‑AGGGAACcgccgc < 2:914727/238‑1 (MQ=255) tGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGCCCGTGGaa > 1:583073/1‑235 (MQ=255) aCGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACCGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TTGTACAGCAGCCCC‑GCCTCAGCAGGCGCC‑GCGC‑CCGCACCA‑ATGGGACCGCCCCGCCAGCTGGACAACGtgc > 2:870513/1‑237 (MQ=255) aCGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCAAGAGCCGGTGCG‑CCGC‑CGCGGCCC‑ATGGGACCGCCGCGCCCGGGGGACAACg > 1:521087/1‑236 (MQ=255) ctctctTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCCACCA‑ATGGGACCGCCCCGCCCGTGGAACAACGTTAGCTcgac > 1:564336/1‑236 (MQ=255) ctctctTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGGGGCAGCAACCCC‑GCATGAGCAGGGGCG‑CCGC‑CGCGACCA‑AAGGCACCGCCGCGACCGTGGAGCAACGGCAGCTCAAt > 2:744715/1‑239 (MQ=255) ggcggTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGGGGAACAACGTCACGTCAATACCCGCCTTTTCGCa > 1:722216/1‑239 (MQ=255) ggggcggcGGGTGGGCTTCCAGACCCGCCCGGGTAGAAAGCGACGGGTTGCTGGCGTTGTTTTCTGGCAGCCTATTTTTAAGGGGTATCCTCCCGCCTTGTT‑GGGTTC‑CGCGCGGGCC‑GCCTTTCGGGCTTCCTGGGGGT‑GGGGCCGGCGGGCCC‑GCAGGAGCGGGCGCG‑CCGC‑CGCGACAA‑TTGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGt < 2:103604/236‑1 (MQ=255) agggTTGGCTCACAGAATCGCCCGGTTAAAAAGCGACGGGCTGCTGACGGTGATTTCGGGCAGACAATATTTAAGGGGGATCTTCTCGCCCTGTT‑GGGTTC‑CGCGCGGGCC‑CCTTTCCAGCTTTCGTGGGGGT‑TGTGACAGCGGCGCG‑GCATGGGCGGGGGCG‑CCGC‑CGCGCCAA‑GTGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGAtt < 2:1237554/236‑1 (MQ=255) gtGGCCTCCAGACTCCCCCGGGTATAAGGCGACAGGTTGCGGGGGGTGTTTCCTGCCAGACTATATTTAAAGCGACTCCTCCCCCTTTGTG‑CGGTCC‑CGCGCGGGCC‑GCTTTTCGGGCTTCCGGGGGGT‑TGTGCCAGCAGCGCC‑GCAGGAGCGGGGGCG‑CCGC‑CGCGACCA‑AGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATg < 2:1157237/237‑1 (MQ=255) aGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCtgtg > 1:366494/1‑238 (MQ=255) tCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGa > 2:950754/1‑239 (MQ=255) aCAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATg > 1:720331/1‑207 (MQ=255) aCAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGaa > 1:25981/1‑236 (MQ=255) aCAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAggt > 1:754438/1‑237 (MQ=255) cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCC‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCt > 1:147317/1‑238 (MQ=255) cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGAG‑CAGC‑CGCGACCA‑ATGGAACCGCCGCGACCGGGGAACAACGTAAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATACATCCTGTGCCTGAGTTTGGCCCCAGGAAGCt > 2:1085197/1‑238 (MQ=255) cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGC‑TGTGACAGCCGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CCCGACCA‑ATGGAACCGCCGCGACCGTGGAAAAACGTCAGCTCACTCCCCGCTTTTTCGCAGGGTTTGGTTAATGCATCCTGTGCCTGACATTCCGCCCAGGAAGCt > 2:7899/1‑238 (MQ=255) cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTGAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACCGCAGCGCC‑GCATGAGCAGGGGAG‑CCGC‑AGAGACCA‑ATGGTAACGCCGCGACCGTGGGACAACGTCAGCACAATACCCCATTTTTCTCTGGATTTTATTTATGCGTCCTGGGCCTGATATAGTGCCCAGAAAGCt > 2:248115/1‑238 (MQ=255) aCCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCCGCCCAATACCCGCCTTTTCGCCGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGGAGCTGCCATCACTCCCTCATCTTTTGCttgg > 2:1150789/1‑235 (MQ=255) aGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAACGCC‑GCCTGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGGGGAACAACGTCAGCTCAATCCCCGCTTTTTCGCAGGCTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCACGAAGCTGCCATCACTCCCGCATCTTTTTCTGAGTCGGAATAGcgc > 2:1159379/1‑237 (MQ=255) gATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGCTATTGCGCCCAGGAAGCTGCCATCACTCCCGCCTCTTTTGCTGAGTCGGAATAGCCAat > 1:271007/1‑237 (MQ=255) gATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatca > 1:316002/1‑239 (MQ=255) atcatcTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGc > 2:860045/1‑129 (MQ=255) atcatcTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGCGGCACAACGTCAGGTCAATACCCGCTTTTTCGCAGGGTTTTATTAATGTATCCTGGGCCTGATATTGCGCCCAGGAACCTGCTAACACTCCCGCATCTTTTCCTGAGGCGGAATAGCCAataa > 2:997699/1‑236 (MQ=255) cccccccccccTG‑T‑CGGTTACCGCGCGGCCC‑CCCTTCCGGCCTCCCGGGCGGT‑GGTGACAGCAGCGCC‑GCGTGAGCGGGCGCC‑CCCC‑CGCGCCAA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatcat < 2:25981/230‑1 (MQ=255) tccGCCCTG‑T‑CGGTGA‑CGGGCCGGCCGGCCGTCCGGGCTTCTGGGGGGT‑TGTGAC‑GCAGGGCCAGAGGGGGAAGGGGCG‑CGGC‑CGCGCCCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCa < 2:719938/237‑1 (MQ=255) cgcgccTGTTCCGGTGC‑CGCGCGGGCG‑GCCTTGCAGCCTTCCGGGGGGT‑TGTGACAGCAGCGCC‑GCAGGGGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAGCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCa < 1:121550/235‑1 (MQ=255) ccTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGGC‑GCATGAGCGGGGGCG‑CCGC‑CGCGGCCA‑AAGGAACCGGCGTGACCGTGGAACAACGTGAGCTCAATAACCGCTTTTTCGCAGGTTTTGGTTAAGGCCTGCTGTGCCTGATATTGCGCCCAGGAAGCTGCCCTCACTCCCGCATCTTTTGCTGATTCGGAATAGCCCATCATCAACATCTGt > 2:89008/1‑239 (MQ=255) tt‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCCTCTTTTGCTGGGTCGGAATAGCCAATCATCACCATCTGTTTg > 1:484350/1‑238 (MQ=255) gcgttaccgcgcgGGCC‑GCTTTACGGGCTCCCGGGCGGT‑TGTGACAGCAGCGCC‑ACATGAGCGGGTGCG‑CCGC‑CGCGACAA‑AGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGcc < 1:930179/232‑1 (MQ=255) ttA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGa > 1:843362/1‑239 (MQ=255) ggccgggCC‑GCCTTCCAGGCTCCGGGGCGGT‑GTTGACACCCGCCGC‑GCGTGAGCGGGGGCC‑CCCC‑CGCACCCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCa < 2:883544/234‑1 (MQ=255) cgcAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCC‑ATGGAACCGCCGCGACCGTGGAACAACGTCCGCTCAATACCCGCTTTTTCGCCGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCCCTCCCGCCTCTTTTGTTGAGTCGGAATAACCAATCATCCCCATCTGTTTGCCCTGAATccg > 2:706456/1‑237 (MQ=255) cgcAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTTCTGAGTCGGAATAGCCAATCATCCCCCTCTGTTTGCCCTGAATCAg > 2:282279/1‑239 (MQ=255) aGGCC‑GCCTTTCGGGCTTCCTGGCGGT‑TGTGACGGCAGCGCC‑GCAGGAGCGGGGGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGc < 1:1068068/238‑1 (MQ=255) gcc‑gccTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCAc > 2:741318/1‑239 (MQ=255) gcc‑gccTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCAc > 1:883544/1‑239 (MQ=255) gtccccTTTCCTGCGTCCCGGTGGTGTGTGACGGGAGCGCC‑GCATGGGCGGCTCCG‑CCCC‑CGCGCACA‑TAGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCa < 2:564336/235‑1 (MQ=255) tcttcagggCTTCCTGGGGGT‑GGGCACAGCGGCGCC‑GGAGGAGCGGGGGCG‑CCGC‑CGCGACAA‑AGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa < 2:271007/232‑1 (MQ=255) ccTTTCAGGCTTTCGGGCGGT‑TGTGACGACAGCGGC‑GTGGGGGCAGGTGCG‑CCCC‑CGCAACCA‑GTGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa < 1:283325/239‑1 (MQ=255) ccTTTCAGGCTTCCTGGCGGT‑TGTGACAGCCGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTTCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGAt > 1:969262/1‑238 (MQ=255) cgtccAGGCTTCCGGGGGGT‑TGCAGCAGCCGCCCC‑GCAGGAGCAGGGGCC‑CCCC‑CGCGCCAA‑ATGGACCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa < 2:366494/234‑1 (MQ=255) cAGCCTTCCTGGTGGT‑TGTGCCAGGAGCGCC‑GCAGGAGCAGGGCCC‑CCCC‑CGCGCCCA‑AGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGt < 2:316002/239‑1 (MQ=255) tgtggACAGCAGCCCC‑GCATGAGCAGGGCCC‑CCGC‑CGCAACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGagcagc < 1:747851/234‑1 (MQ=255) ggcgcC‑ACAGGAGCGGGGGCG‑CCGC‑GGCGACAA‑AGGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGAc < 2:266304/238‑1 (MQ=255) cgcgcG‑GCAGGAGCAGG‑GCG‑CCCCACGGGGCCATATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATCCCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCTCCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGa < 1:749273/238‑1 (MQ=255) acggcc‑gcGTGAGC‑GGGGCGCCCGC‑CGCGACCA‑ATGCAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGAc < 1:672314/236‑1 (MQ=255) cgcc‑gcATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACa > 2:454951/1‑238 (MQ=255) cc‑gcATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCATTATTAAGCAGCTGGGTCATGACATCg > 2:1138433/1‑239 (MQ=255) c‑gcATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGt > 1:56143/1‑239 (MQ=255) ggcATGGGCAGGAGCG‑CCGC‑CGCGACCA‑AGGGAGCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCGTGACATCGt < 1:1159379/238‑1 (MQ=255) ggcAGGAGCAGGGGCG‑CCGC‑CGCGCCAA‑GTGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGt < 1:282279/238‑1 (MQ=255) ggCAGGGGCG‑CCGC‑CCCAACCA‑ATGGACCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCg < 1:947579/237‑1 (MQ=255) ggaGGTCCC‑CCCC‑CGCGCCAA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCg < 1:141469/235‑1 (MQ=255) gTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCgttgtt < 1:741318/238‑1 (MQ=255) | GGTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGCGGATCATCTCGCCCTGTT‑CGGTTA‑CGCGCAGGCC‑GCCTTTCAGGCTTCCTGGCGGT‑TGTGACAGCAGCGCC‑GCATGAGCAGGTGCG‑CCGC‑CGCGACCA‑ATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTT > NC_000913/4151094‑4151565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |