New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	44 (0.900)	5 (0.120)	5/250	5.7	9.8%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	1209619 =	53 (1.230)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGC  >  NC_000913/1209479‑1209758                                                                                                                                             |                                                                                                                                            cGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGt                                                                                                                                           <  2:47582/143‑1 (MQ=255)   gATAAGCCTTTGCCAGTTCCGGGTATCCTTCAGCAGAAAAAGCGTCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGttt                                                                                                                                         <  2:278748/143‑1 (MQ=255)    aTAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTa                                                                                                                                        <  1:502065/143‑1 (MQ=255)    aTAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGGTTa                                                                                                                                        >  1:159076/1‑143 (MQ=255)       agcggttGCCAGTGCGGGGTGTTGTTCGGGAGAGAAAGCGGCACCAGTGCATGTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGa                                                                                                                                     <  2:206818/138‑1 (MQ=255)       aGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGa                                                                                                                                     <  2:838599/143‑1 (MQ=255)        gCCTTTGCCAGTTCCGGGTCTTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaa                                                                                                                                    >  2:317336/1‑143 (MQ=255)        gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTACTGCAGAGCCTCCTCCCAAGCCAACGTTCATGaa                                                                                                                                    >  2:877139/1‑143 (MQ=255)           tttGCCAGTTCCGGGTTTTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGATGAAGGCCCCGGAACCGGGACACCGACAGGTAATGCAGAGCCTTCTCCCATACCAACGTTCATGAAAAt                                                                                                                                 >  2:126041/1‑143 (MQ=255)            ttGCCGGTTCCGGGTATTCGTCAGCGGAAAAGGCGGCAGCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCGGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATg                                                                                                                                <  2:235689/143‑1 (MQ=255)              gCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCCCCCAAACCAACGTTTATGAAAATgaa                                                                                                                              >  2:678131/1‑143 (MQ=255)                       gggTATTCGTCAGCAGAAGAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACa                                                                                                                     <  2:135954/143‑1 (MQ=255)                          tATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGATGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAGACAACGTTTATGAAAATGAGGAAGTAACAAGc                                                                                                                  >  2:549985/1‑143 (MQ=255)                             tcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCaaa                                                                                                               <  2:92728/143‑1 (MQ=255)                                 cagcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATGACAAGCAAATGGc                                                                                                           >  1:676949/1‑143 (MQ=255)                                   gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGGAATAACAAGCAAATGGcat                                                                                                         >  1:887992/1‑143 (MQ=255)                                    cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGACACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatc                                                                                                        >  1:189372/1‑143 (MQ=255)                                     agAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGGTGGCGGAGTGGCTGAAGGCCACGGGACCGGGACACCGACAGGTAATGCAGAGCCTTCTCCCAAACCAACGGTGATGAAAATGAAGAAATAACAAGAAAATGGcatca                                                                                                       >  2:701374/1‑143 (MQ=255)                                       aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAAAGCCTTCTCCCAAACCACCGGTTCTGAAAATGGAGGAATAACAAGCACATGGcctcata                                                                                                     >  2:9166/1‑142 (MQ=255)                                           aGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg                                                                                                 >  2:556189/1‑143 (MQ=255)                                              ggCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt                                                                                              >  1:132914/1‑143 (MQ=255)                                                   cATTGCATTTCAGCCAGCCTGATGGCGGAATGCCTGACAGCGACTGTACCGGGACACCAACAGGTAATGCCGAGCCTTCTCCCAAACCAACTCGCATGAGAATGACGAAATCACAAGCACATGGCATCATTCCCGCTTTTccc                                                                                         >  2:587403/1‑143 (MQ=255)                                                        cATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCCTTCCTGCTTTTCCCAgggg                                                                                    >  2:829724/1‑143 (MQ=255)                                                         aTTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg                                                                                   >  2:737117/1‑143 (MQ=255)                                                               gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAATCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa                                                                             <  2:663899/143‑1 (MQ=255)                                                                    ccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACAAACAGGTAATGCATAGCCTTCTCCCAAAACAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCATGCTTTTACAAGGGGGAATTCAGATGc                                                                        >  2:165358/1‑143 (MQ=255)                                                                    ccTGTGGGCGGAGTGGCTGAAGTCCACGGAACCGCGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGc                                                                        <  2:164123/143‑1 (MQ=255)                                                                       gTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCTAAAACCACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCACCATTCATGCTATTACGAGGAGGATTTAACATGCTTa                                                                     >  2:379980/1‑143 (MQ=255)                                                                          ggCGGAGTGGCTGAAGGCCACGGAACCGGTACACCAACAGGTAGTGTGGTGCCGGCACCCACACTACCTTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTg                                                                  <  2:629006/143‑1 (MQ=255)                                                                          ggCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATCGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTg                                                                  >  2:162378/1‑143 (MQ=255)                                                                            cGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc                                                                <  1:595475/143‑1 (MQ=255)                                                                                  ggCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTa                                                          <  1:113951/143‑1 (MQ=255)                                                                                       aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGt                                                     >  2:639791/1‑143 (MQ=255)                                                                                       aaGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGt                                                     <  1:639791/143‑1 (MQ=255)                                                                                         ggCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACACGGGGGACTGAGCATGCTTATTGGCTATGTACGCGTAt                                                   >  1:688617/1‑143 (MQ=255)                                                                                          gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATc                                                  >  1:604295/1‑143 (MQ=255)                                                                                           ccccgtaaCCGGGACACCAACAGTGAATGCAGAGCCTTCTCCTAAACCACCGTTTATAAAAATGAAGAAATAACAAGCAAATGTCATCATTCCTTCTTTTACCAGGGGGATTTAACATGCTTATTGGATATGTACGCGTATca                                                 <  2:60616/137‑1 (MQ=255)                                                                                            cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaa                                                <  1:19380/143‑1 (MQ=255)                                                                                            cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAGTTAACATGCTTATTGGCTCTGTACGCGTATcaa                                                >  1:521558/1‑143 (MQ=255)                                                                                                gtttcatgACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa                                            <  1:877139/136‑1 (MQ=255)                                                                                                 aaCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATga                                                                                                                               <  2:432913/59‑1 (MQ=255)                                                                                                 aaCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATga                                                                                                                               >  1:432913/1‑59 (MQ=255)                                                                                                 aaCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt                                           <  1:317336/143‑1 (MQ=255)                                                                                                 aaCCGGGACACCAACAGGAAAGGCAGAGCCTTCCCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCCCAGGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt                                           <  1:126041/143‑1 (MQ=255)                                                                                                     gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAcc                                       <  1:556189/143‑1 (MQ=255)                                                                                                          acCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAac                                  >  1:565030/1‑143 (MQ=255)                                                                                                           acAATAGGTAATGCAGAGCCTTCTTCCAAACCATCGTTTATGAAAATGAAGAAATAATAAGCAAATGGCATCATTCCTGCTTTTACCAGTGGGATTTAACATGCTTATTGGCTATGTACGCTTATCAACAAATGACCAGAaca                                 <  2:27214/142‑1 (MQ=255)                                                                                                              aCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAg                              >  1:694888/1‑143 (MQ=255)                                                                                                                aGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt                            <  1:258922/143‑1 (MQ=255)                                                                                                                 ggTAATGCAGTGCCTTCTCCCAAACCATCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAGCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATc                           <  1:87645/143‑1 (MQ=255)                                                                                                                     aTGCAGAGCCTTCTCCCACACCGACGTTAATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACa                       <  1:328105/143‑1 (MQ=255)                                                                                                                         agagCCTTCTCCCAAACCAACGGTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCAACTTATAACAGGGAGATTCAACTAGCTTATTGGCTATGCACGCGTACCAAGACATGACCAGGACACAGCTCCACAACGt                   >  2:800089/1‑143 (MQ=255)                                                                                                                           agCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTac                 >  2:692669/1‑142 (MQ=255)                                                                                                                             ccTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACAAGAACACAGATCTACAACGCAATg               >  1:231891/1‑143 (MQ=255)                                                                                                                              catctcCCAAACCAACGATTATGTAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgc              <  1:365580/141‑1 (MQ=255)                                                                                                                                     cAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCCTCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACACATGACCAGAACACAGATCTACAACGTAATGCGCAGAAc       >  2:120470/1‑143 (MQ=255)                                                                                                                                      aaaCCAACGTTTATGAAAAAAAAGAAATAGCAAGCAAATGGCACCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACt      <  1:500030/143‑1 (MQ=255)                                                                                                                                         ccAACTTTTATGAATATGATGAAATAACATGTAAATGGCATCATTCCTTCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACTCGTATCAACAAATGACTAGAACACAGATCTACAACGTAATGCGCTGAACtgtg   <  2:206415/143‑1 (MQ=255)                                                                                                                                         ccAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACtgtg   <  1:806269/143‑1 (MQ=255)                                                                                                                                          cAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTTTGc  >  1:14293/1‑143 (MQ=255)                                                                                                                                          cAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACCGTGc  >  2:447204/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                            CGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGC  >  NC_000913/1209479‑1209758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.