| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3365206 = | 59 (1.050) | 4 (0.070) | 4/272 | 8.0 | 6.8% | pseudogene (22/367 nt) | yhcE | pseudogene fragment; interrupted by IS5 |
| ? | NC_000913 | 3365242 = | 54 (1.000) | pseudogene (58/367 nt) | yhcE | pseudogene fragment; interrupted by IS5 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAA > NC_000913/3365074‑3365347 | ggACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGAACTCACCTGGTAATCCCATAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCctgctgct < 1:229381/143‑1 (MQ=255)ggACATGGTGCCAGATATAAAAGATGGGCAGCAATCATGCCGTATTCGCCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCctgctgct < 1:959453/143‑1 (MQ=255)cgACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCctgctgct < 1:253359/142‑1 (MQ=255) cATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGaa < 2:388297/143‑1 (MQ=255) cATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGaa < 2:836555/143‑1 (MQ=255) tGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCGGAACTTCg > 1:578744/1‑143 (MQ=255) gCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGc < 1:785581/143‑1 (MQ=255) aGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAAGAGGATGCCTGCTGCTGAACTGCGCCag > 1:16718/1‑142 (MQ=255) tataAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATCATAACAGGATGCCTGCTGCTGCACTTGGCCATGGc > 1:763625/1‑143 (MQ=255) aaaGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGCTGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGGGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCt > 1:634319/1‑143 (MQ=255) aaGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCGGAACTTAGCCATGGCCGCtg > 2:287663/1‑142 (MQ=255) aaGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGAGGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTc > 1:854427/1‑143 (MQ=255) aGATGAGCGGCAATTAGGCCGTATTCACCATAAACAACCAGAAGATGCGCCAAATGATGTGTTCTATGGGACAGCAACAGGAGAGTGCCAATGATACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCtga < 2:8315/143‑3 (MQ=255) gATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAg < 2:477552/143‑1 (MQ=255) acgAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAgg < 1:402102/141‑1 (MQ=255) gcagcaCGCAGGCCGTATTCACCTTACATGCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCaga < 2:524264/143‑1 (MQ=255) gcagcaATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCaga < 2:409385/143‑1 (MQ=255) aTCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGACCTTCGCCATGGCCGCTCAGGCAGAGGGTaa > 1:554888/1‑143 (MQ=255) ccGTATTCACCTTACGTTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATAtctc < 2:940406/143‑1 (MQ=255) cGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTc‑c < 1:447728/143‑1 (MQ=255) gTATTCACCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑Ca < 1:878074/143‑1 (MQ=255) ccTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCAt > 2:200944/1‑143 (MQ=255) ttACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCCGAGTGTAATATCTC‑CAGTAGCATAc > 1:732178/1‑143 (MQ=255) agaagaTGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGGAGCAGACAAAATATCGa > 2:710684/1‑143 (MQ=255) gaagaTGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGAc < 2:347622/143‑1 (MQ=255) agaTGCACCAAAAGATGTGTTCTAGGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTa < 1:477580/143‑1 (MQ=255) cgagaaGGTGTGTGCTATTGGAGAGCAACAGGGGAGTGCCAATGAAACGGATACTAAGAGGATGCCGGCGGCGGAACTTCGCCATGGCCGCTGAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACGATGGCaaa < 2:805375/139‑1 (MQ=255) ccAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATAGCaaa > 1:680971/1‑143 (MQ=255) cAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCAGGGCCGATCAGGCAGAGTGTAATATCTC‑CAATAGCATACAAAATATCGGCTATGGCAAAc > 2:339307/1‑143 (MQ=255) aaaaGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACg < 1:249832/143‑1 (MQ=255) aaGAGGCGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGaa < 1:726253/143‑1 (MQ=255) tgtTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGtgctg < 2:543009/143‑1 (MQ=255) ttCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGcc > 1:611202/1‑143 (MQ=255) tATGAGACAGCAACAGGAGAGTGCAAATAAAACAGATAATAACAGGATGCCTGATGATAAACTTCGCACTGGAAGACCAGGCATAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCAtc > 2:214112/1‑142 (MQ=255) gagaCAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTTCGGACGAGTGTAATGTCAC‑CAGTAGCATACAAAATATCGACTATGGCAAAAGAAGTGCGGCCGTgggc > 1:48729/1‑143 (MQ=255) accggaaCAAGAGAGTGCCAATGAGACGGATAATAACAGGACGCCTGCTGCTTAACTTCGCCATGGCCGCTCACGCAGAGTGTAATATCTC‑CAGTAGCATACTGCATTTCGCCGATTCCAGACAAAGTTTGGCCATGCGCCaa < 2:995350/138‑1 (MQ=255) aGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGCGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGt > 2:104585/1‑143 (MQ=255) cAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTg > 2:280743/1‑143 (MQ=255) aaCAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGa > 2:627518/1‑143 (MQ=255) aaCAGCAGACTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGa < 1:819306/143‑1 (MQ=255) aCATGAGTGTGCCAGTGATACGTTTAATGACAGTATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGAc < 2:70258/143‑1 (MQ=255) aCAGGAGAATGCCAATGAAACAGATAATAACATGATGACTGCTGCTGAACTTCGCCATGGAGGCTCAGGCAGAGTGTAATATCTC‑CAGTAGTATACAAAATATCGACTATGGCAATCGAAGTGCTGCCATGCGCCAAGTTGAc < 2:1600/143‑1 (MQ=255) ggAGAGTGCCAAGGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCgg < 2:631584/143‑1 (MQ=255) gtgcgTGCGAATGCATCGGACAATACCAGGATGCCTGCTGCGGGACTGCGCCGTGGCCGCTGAGGCAGAGTGTAATATCGC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCAGTGCGCCAAGTTGACCggg < 2:412696/139‑1 (MQ=255) gagaGTGCCAATGAAACGGATAATAACAGGCTGCCTGCTGCTGACCTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTGTGGCAAACGAAGTGCTGCCCAGCGCCACGTTGAACggg > 2:28959/1‑143 (MQ=255) gagTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGGTGCCATGCGCCAAGTTGACCGGGGt > 1:861806/1‑143 (MQ=255) ccAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAaac > 2:303394/1‑143 (MQ=255) aTGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGGAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCCTGCGCCAAGTTGACCGGGGTAAaacaac > 2:766812/1‑143 (MQ=255) tgaggcGGCTAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAacaaca < 2:705343/138‑1 (MQ=255) aaCGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACaa > 2:906135/1‑143 (MQ=255) aaCGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGACATGCGCCAAGTGGACAGGGGTAAAACAACACaa > 1:411757/1‑143 (MQ=255) aCGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGGTAAGGTAGAGTGTAAAAGCCCACACCGGAAGATAATAT‑GCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAAt > 1:470161/1‑143 (MQ=255) aCGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAAt > 1:588903/1‑143 (MQ=255) cGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAACCAACACAGtt > 2:82510/1‑143 (MQ=255) ggctaataaCAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCCTACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTa < 1:287663/140‑1 (MQ=255) ggATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGAGTAAAACAACACAAtaa > 1:613475/1‑141 (MQ=255) ataaCAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGcaga < 1:902036/143‑1 (MQ=255) cAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATATC‑GAGTAGCACACAACCTATCGCCAACGGCAAACGAAGTGCTGCCATGCGCCAAGTCGACCGGGGGAAAACAACACCATTAGcagacaga > 1:469738/1‑143 (MQ=255) aTGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGGCCGGGGTAAAACTACACAATGAGCAGACAGAACaa > 1:371602/1‑143 (MQ=255) | GGACATGGTGCTAGATATAAAAGATGAGCAGCAATCATGCCGTATTCACCTTACATTCCCAGAAGATGCACCAAAAGATGTGTTCTATGAGACAGCAACAGGAGAGTGCCAATGAAACGGATAATAACAGGATGCCTGCTGCTGAACTTCGCCATGGCCGCTCAGGCAGAGTGTAATATCTC‑CAGTAGCATACAAAATATCGACTATGGCAAACGAAGTGCTGCCATGCGCCAAGTTGACCGGGGTAAAACAACACAATTAGCAGACAGAACAA > NC_000913/3365074‑3365347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |