Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)45 (0.800) 39/284 0.5 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 1293032 =0 (0.000)64 (1.130) 51/284 0.1 100% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 107 total aligned reads displayed.

TTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCT  >  NC_000913/1292897‑1293181
                                                                                                                                              |                                                                                                                                              
ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTgccg                                                                                                                                                >  1:389679/1‑143 (MQ=255)
 gtccggcggtgctcttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTgccgc                                                                                                                                               >  1:439230‑M1/135‑143 (MQ=255)
   aGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggt                                                                                                                                             <  1:804344‑M2/143‑4 (MQ=255)
   aGAATTTTAAGTGCTTCGCTCATTGTAGCAATCTCAAAATTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGACAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggt                                                                                                                                             <  2:495338‑M2/143‑4 (MQ=255)
    cggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaa                                                                                                                                            <  1:134601‑M1/12‑1 (MQ=255)
     ggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtacgttggcagcatcaccTTGTGCCGCCaat                                                                                                                                           <  2:1000407‑M1/13‑1 (MQ=255)
            aGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcc                                                                                                                                    >  2:581932‑M2/1‑131 (MQ=255)
              tGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaa                                                                                                                                  >  1:707856‑M2/1‑129 (MQ=255)
               gCTTCGCTCATTGTAATAAGCTCAAACTTATATTCGGGTGGTTTCTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaac                                                                                                                                 >  1:451664‑M2/1‑128 (MQ=255)
                      tacgcacccccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaaa                                                                                                                          >  1:982673‑M1/114‑143 (MQ=255)
                       cATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaccttattgtt                                                                                                                         <  1:181352‑M2/143‑24 (MQ=255)
                       acgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGTCAACAAATATCTCTTCATaaaa                                                                                                                         <  2:852204‑M1/31‑1 (MQ=255)
                         ttGGAGTAATCTCAAACTTATATTGTGGTGGTTTGGTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatag                                                                                                                       >  2:665975‑M2/1‑118 (MQ=255)
                         gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAAtt                                                                                                                       >  1:988181‑M1/111‑143 (MQ=255)
                         gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAACAGCTTTTCGTAAAAtt                                                                                                                       <  2:67395‑M1/33‑1 (MQ=255)
                          ctccatcccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTa                                                                                                                      >  2:948666‑M1/110‑143 (MQ=255)
                          catcaccccgttagtagctgaacaggatggacagctgatagacacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTa                                                                                                                      >  2:94156‑M1/110‑143 (MQ=255)
                            tagtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAGTAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgt                                                                                                                    >  1:888777‑M2/1‑115 (MQ=255)
                            tagtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttcttgatagtgt                                                                                                                    <  1:535346‑M2/143‑29 (MQ=255)
                             caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGcc                                                                                                                   <  1:542133‑M1/37‑1 (MQ=255)
                             caccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTATCATAAAATTAGcc                                                                                                                   <  2:90842‑M1/37‑1 (MQ=255)
                              accccgtcagaagctgaacaggagggacagctgaaagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCa                                                                                                                  >  1:959332‑M1/106‑143 (MQ=255)
                               taATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgtttt                                                                                                                 >  2:385042‑M2/1‑112 (MQ=255)
                                 ccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATCACATTCGCcagca                                                                                                               <  1:408941‑M1/41‑3 (MQ=255)
                                 ccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGaa                                                                                                               <  2:686312‑M1/41‑1 (MQ=255)
                                  cgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGaaa                                                                                                              >  2:206275‑M1/102‑143 (MQ=255)
                                    tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTACGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtactgactccaacttattgatagtgttttatgtt                                                                                                            <  2:603691‑M2/143‑37 (MQ=255)
                                     cagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGa                                                                                                           >  1:208361‑M1/99‑143 (MQ=255)
                                     cAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactcaatcttattgatggtgttatatcttc                                                                                                           <  1:570438‑M2/143‑38 (MQ=255)
                                      aaaCTTATATGGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTGATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttca                                                                                                          >  1:55048‑M2/1‑105 (MQ=255)
                                        tatcttaagaggagggacagctgatagaaacagaagccaccggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAcgc                                                                                                        >  2:402978‑M1/96‑143 (MQ=255)
                                        tagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATACAATTAGCCAGAAAAGAcgc                                                                                                        <  1:639474‑M1/48‑1 (MQ=255)
                                          ttATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagata                                                                                                      <  1:990246‑M2/143‑43 (MQ=255)
                                          ttATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagata                                                                                                      >  1:521782‑M2/1‑101 (MQ=255)
                                            tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATACAATTAGCCAGAAAAGACGCGGCa                                                                                                    <  1:191446‑M1/52‑1 (MQ=255)
                                             gaactggagcgacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCat                                                                                                   >  1:223210‑M1/91‑143 (MQ=255)
                                                 aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggccgcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAg                                                                                               >  1:910903‑M1/87‑143 (MQ=255)
                                                   ggtggtTTGTTGAGGTAATAAGAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat                                                                                             >  1:260321‑M2/1‑92 (MQ=255)
                                                    gtggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatg                                                                                            <  1:342116‑M2/143‑53 (MQ=255)
                                                        acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAtt                                                                                        <  1:875014‑M1/64‑1 (MQ=255)
                                                        acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTACCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAtt                                                                                        <  2:500754‑M1/64‑1 (MQ=255)
                                                        acagcggatagaaacagaagccactggagtacctcaaaaacaccatcatacactaagtcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAtt                                                                                        >  2:1000857‑M1/80‑143 (MQ=255)
                                                         ttgttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                       <  1:660934‑M2/143‑58 (MQ=255)
                                                         ttggtgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                       >  1:4806‑M2/1‑86 (MQ=255)
                                                          agctgagagaaacagaagccactggagcacctcaaaaacaccatcatccactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTa                                                                                      >  1:273994‑M1/78‑143 (MQ=255)
                                                             tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                                   >  1:948931‑M1/75‑143 (MQ=255)
                                                              gatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACAcc                                                                                  <  1:927942‑M1/70‑1 (MQ=255)
                                                               aGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                                 <  2:133365‑M2/143‑64 (MQ=255)
                                                               aGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                                 >  2:895439‑M2/1‑80 (MQ=255)
                                                                 agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCCTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgat                                                                               >  2:142577‑M1/71‑143 (MQ=255)
                                                                    aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCgatgat                                                                            <  2:659766‑M1/76‑1 (MQ=255)
                                                                     acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGAtt                                                                           <  1:874928‑M1/77‑1 (MQ=255)
                                                                        taGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                                        >  1:729136‑M2/1‑71 (MQ=255)
                                                                           gccactggagcacatgaacaccaccatcatacactaaatcagtaagttggtagcatcaacTTGTGTCCCCAATAAATATCTTTTCATAAAATTCGCCAGAATTGACGCGGTATATAGCCCTATTTACACCGATGATTTCgcag                                                                     >  2:769798‑M1/61‑143 (MQ=255)
                                                                            gCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgat                                                                    >  1:373977‑M2/1‑67 (MQ=255)
                                                                              cTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttcttgatggtgttttatgttcagataatgcccgatgactttgtacttgagctccacggattt                                                                  <  2:318321‑M2/143‑79 (MQ=255)
                                                                              cTTAAATTCAGTGGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatggctccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattt                                                                  >  1:45225‑M2/1‑65 (MQ=255)
                                                                              actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCAc                                                                  <  1:335415‑M1/86‑1 (MQ=255)
                                                                                tAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                                >  1:279557‑M2/1‑63 (MQ=255)
                                                                                  gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGa                                                              <  1:487735‑M1/90‑1 (MQ=255)
                                                                                    ttCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccggtgagtttgtcatgcagctccactgattttgggaa                                                            <  1:411813‑M2/143‑85 (MQ=255)
                                                                                    ttCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacctattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcccccgattttgagcc                                                            <  2:944038‑M2/143‑85 (MQ=255)
                                                                                     cacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGt                                                           >  2:288567‑M1/51‑143 (MQ=255)
                                                                                        ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaa                                                        <  2:791214‑M1/96‑1 (MQ=255)
                                                                                         tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaa                                                       <  1:652071‑M1/97‑1 (MQ=255)
                                                                                         tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaa                                                       <  1:825811‑M1/97‑1 (MQ=255)
                                                                                          caaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTaaaa                                                      >  1:988384‑M1/46‑143 (MQ=255)
                                                                                             aaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACtt                                                   <  1:924916‑M1/101‑1 (MQ=255)
                                                                                              cacaccatcataccctaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                                  >  2:239540‑M1/42‑143 (MQ=255)
                                                                                                 accatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCCGCACACGACCTTCAAACTTCCTg                                               <  2:481166‑M1/105‑1 (MQ=255)
                                                                                                    atcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGAtt                                            >  1:659766‑M1/36‑143 (MQ=255)
                                                                                                    atcatacactaaatcagtaagttggcagcaccaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGAtt                                            >  1:81630‑M1/36‑143 (MQ=255)
                                                                                                     tcatccactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTc                                           >  2:328126‑M1/35‑143 (MQ=255)
                                                                                                     cAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtc                                           >  1:23361‑M2/1‑42 (MQ=255)
                                                                                                      aGGAATGTAAGGCATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacgtattggtagtgttttaggttcagataatgcccgatgactttgtcatgcagctccaccgattttgcgaacgagagcgacttccgtct                                          <  1:816732‑M2/143‑103 (MQ=255)
                                                                                                       atacactaaatcagtaagttggcagcatcaccTTGTGCCACCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCAt                                         <  2:839577‑M1/111‑1 (MQ=255)
                                                                                                          cactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTc                                      <  1:558869‑M1/114‑1 (MQ=255)
                                                                                                           tGTAATGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaattactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagcc                                     >  2:707567‑M2/1‑36 (MQ=255)
                                                                                                                   agtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAGCTTCCTGATTCATGTCACATTTTAt                             <  1:238558‑M1/123‑1 (MQ=255)
                                                                                                                        aaaTTGTTCTTTATTTTGGGCCGgtgaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctg                        >  2:657314‑M2/1‑23 (MQ=255)
                                                                                                                         ttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTAATGTCACATTTTATGGGgag                       <  2:333668‑M1/129‑1 (MQ=255)
                                                                                                                          tcagcagcaccccTTGTGCCGCCAATAAATATCTTTTCATATAATTAGCCAGAAAAGACGCGGCATATCGCCCTATCTACACCGATGATTCCGCAGCACGCGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGgaga                      >  2:790872‑M1/14‑143 (MQ=255)
                                                                                                                           ggcagcatcaccGTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCCCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGAt                     <  2:946280‑M1/131‑1 (MQ=255)
                                                                                                                               tCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcaga                 >  2:497972‑M2/1‑16 (MQ=255)
                                                                                                                               tCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcaga                 >  1:94333‑M2/1‑16 (MQ=255)
                                                                                                                               tCTTTATTTTGTGCCGggtaatgacgcaaacttagtgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcaga                 >  2:542574‑M2/1‑16 (MQ=255)
                                                                                                                                catcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCg                >  2:365133‑M1/8‑143 (MQ=255)
                                                                                                                                 tttATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtccccgccgtgcagggcgctcccccagatt               <  2:348292‑M2/143‑130 (MQ=255)
                                                                                                                                   tATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattca             >  2:342116‑M2/1‑12 (MQ=255)
                                                                                                                                   tATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttaagaggccagcccatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattca             >  1:1007556‑M2/1‑12 (MQ=255)
                                                                                                                                    accTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAACCTTCCTGATTCATGTCCCATTTTATGGGCGGATTATCGTagc            <  1:53772‑M1/140‑2 (MQ=255)
                                                                                                                                    aTTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcag            >  2:804344‑M2/1‑11 (MQ=255)
                                                                                                                                     ccTTGTGCCGCCAATAAATACCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAAGTTAAAACTTCCTAGTTCATATCACATTTTATAGGGGGATTCTCGTAGGc           <  2:795198‑M1/141‑1 (MQ=255)
                                                                                                                                      tttGTGCGGggtaatgtcttcgacttcttgatagtgttttatgttcatataatgcccgatgacttggtcatgcagctccaccgattttgagaccgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggt          >  2:363728‑M2/1‑9 (MQ=255)
                                                                                                                                      ctggtgCCGCGAATAAATATCGTTTCATAGAAGTAGCCAGAAAAGACGCGGCATAGAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCt          <  2:644319/140‑1 (MQ=255)
                                                                                                                                         gcgccgccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCTGCACGACAATTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTgac       <  1:792252/141‑1 (MQ=255)
                                                                                                                                           gCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgc     >  1:495338‑M2/1‑4 (MQ=255)
                                                                                                                                             cGgggaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccg   >  2:535346‑M2/1‑2 (MQ=255)
                                                                                                                                              gccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCt  <  1:795119/143‑1 (MQ=255)
                                                                                                                                              gccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCt  <  1:795177/143‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                              
TTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCT  >  NC_000913/1292897‑1293181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.