| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2453898 = | 101 (0.900) | 3 (0.030) | 3/428 | NT | 2.6% | pseudogene (1104/2646 nt) | yfcU | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| ? | NC_000913 | 2454234 = | 129 (1.180) | pseudogene (768/2646 nt) | yfcU | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCAATCTGCGCGGCTACGCGCCAGACATTTCCGGCGTGGCACACACCACAGCAAAAGTGACCGTCAGCCAGATGGGGCGTGTGATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTATTCAGGATCTTGGTGATTCCGTCTCCGGTACGTTGCATATTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTCACTCGCCCAGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2454139‑2453898‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGAT > NC_000913/2454234‑2454470 CCAACCTGCGCGGCTACGCGCCAGACATTTCCGGCGTGGCACCCCCCACAGCAAAAGTGACCGTCAGCCAGATGGGGCGTGTGATTTACGAAACGCAGGTTCCGGCTGGACCTTTTCTTATTCAGGATCTTGGTGATTCCGTCTCCGTTACGTTGCATATTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATGCCATCAGCACCGCCTCGATGCCATACCTCACTCGCCCAGGC < 1:587821/239‑1 CAGCCAGATGGGGCGTGTGATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTATTCAGGATCTTGGTGATTCCGTCTCCGGTACGTTGCATATTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTCACTCGCCCAGGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCCTAATAGCGACTCCACTCCCATTTTTTT > 1:875985/1‑239 CGCAGGTTCCGGCTGGACCGTTTCGTATTCAGGATCTTGGTGATTCCGTCTCCGGTACGTTGCATATTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTCACTCGCCCAGGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTC < 2:640669/239‑1 CCAGTTGCAGGAATATGACTTCTGCACCGCCTCGATGCCATACCTCACTCGCCCAGTCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATGCGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTT < 2:875985/238‑1 cagGGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCCCTCCCATTTTTTTTGTGTGTCAGCCCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTTCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCG < 2:881693/236‑1 GCCGGTTTGGCTGTTAATGCCGGTAACGCCCGCCAGGCATAAGAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCAGGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAG < 2:295322/238‑1 GCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGTCCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAG < 1:721195/238‑1 GCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAG < 1:474924/238‑1 GCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAG < 2:1078959/238‑1 GCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAG < 2:1087124/238‑1 AGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGAT > 1:1128447/1‑239 CCAATCTGCGCGGCTACGCGCCAGACATTTCCGGCGTGGCACACACCACAGCAAAAGTGACCGTCAGCCAGATGGGGCGTGTGATTTACGAAACGCAGGTTCCGGCTGGACCGTTTCGTATTCAGGATCTTGGTGATTCCGTCTCCGGTACGTTGCATATTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTCACTCGCCCAGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2454139‑2453898‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTCCCGTTGCCGCTGATCTCGTTACTGTCATCGCCGCCATTTTCTTCGTGTCGTGTTTGCGCAGTGAT > NC_000913/2454234‑2454470 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |