New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3552307106 (0.940)5 (0.050) 5/422 NT 4.6% coding (167/2394 nt) malP maltodextrin phosphorylase
?NC_000913 = 3552313 105 (0.970)coding (161/2394 nt) malP maltodextrin phosphorylase
Rejected: Frequency below/above cutoff threshold.

AACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGTCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACAGGTTGTTGCCCGTCAGGCGACCAATCAAAAACTCCATTGAGATGTAGTTAACATGTCGCTGATTCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3552065‑3552307
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcgccaAGCCGGTGGCGAATCAGCGACATGTTAACTACATCTCAATGGAGTTTTTGATTGGTCGCCTGACGGGCAACAACCTGTTGAATCTCGGCTGGTATCAGGATGTACAGGATTCGTTGAAGGCTTATGACATCAATCTGACGGACCTGCTGGAAGAAGAGATCGACCCGGCGCTGGGTAACGGTGGTCTGGGACGTCTGGCGGCGTGCTTCCTCGACTCAATGGCAACTGTCGG  <  NC_000913/3552313‑3552082
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
AACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGTCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACAGGTTGTTGCCCGTCAGGCGCCCAATCAAAAACTCCATTGAGATGTAGTTAACATGTCGCTGATTC                                                                                                                                                                                                                                              >  2:1224054/1‑239
AACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGTCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACAGGTTGTTGCCCGTCAGGCGACCAATCAAAAACTCCATTGAGATGTAGTTAACATGTCGCTGATTC                                                                                                                                                                                                                                              >  1:590297/1‑239
AACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGTCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACAGGTTGTTGCCCGTCAGGCGACCAATCAAAAACTCCATTGAGATGTAGTTAACATGTCGCTGATT                                                                                                                                                                                                                                               >  2:1215557/1‑238
AACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGTCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACAGGTTGTTGCCCGTCAGGCGACCAATCAAAAACTCCATTGAGATGTAGTTAACATGTCGCTGATT                                                                                                                                                                                                                                               >  2:476968/1‑238
     GTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGTCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACAGGTTGTTGCCCGTCAGGCGACCAATCAAAAACTCCATTGAGATGTAGTTAACATGTCGCTGATTCGCCA                                                                                                                                                                                                                                          >  2:648815/1‑238
                                                 CGCCAGACGTCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACAGGTTGTTGCCCGTCAGGCGACCAATCAAAAACTCCATTGAGATGTAGTTAACATGTCGCTGATTCGCCACCGGCTTGGCGAATCAGCGACATGTTAACTACATCTCAATGGA                                                                                                                                                                                               >  2:244174/1‑237
                                                                            ccgccCCGAGTCAATCTCTGCTTCCAGCAGGACCGACAGATTGATGTCATAAACCTTCAACGAATCCATTACACCCTGATACCAGCCTAGATTCAACAGGTTGTTGCCCGTCAGGCGACCAATCAAAAACTCCATTGAGATGTAGTTAACATGTCGCTGATTCGCCACCGGCTTGGCGAATCAGCGACATGTTAACTACATCTCAATGGAGTTTTTGATTGGTCGCCTGACGGGCAACA                                                                                                                                                                  <  2:115605/234‑1
                                                                                                  TCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACAGGTTGTTGCCCGTCAGGCGACCAATCAAAAACTCCATTGAGATGTAGTTAACATGTCGCTGATTCGCCACCGGCTTGGCGAATCAGCGACATGTTAACTACATCTCAATGGAGTTTTTGATTGGTCGCCTGACGGGCAACAACCTGTTGAATCTCGGCTGGTA                                                                                                                                            <  1:420314/239‑1
                                                                                                        AGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACAGGTTGTTGCCCGTCAGGCGACCAATCAAAAACTCCATTGAGATGTAGTTAACATGTCGCTGATTCGCCACCGGCTTGGCGAATCAGCGACATGTTAACTACATCTCAATGGAGTTTTTGATTGGTCGCCTGACGGGCAACAACCTGTTGAATCTCGGCTGGTATCAGG                                                                                                                                       <  1:244174/238‑1
                                                                                                                                                                                                                       ATGTAGTTAACATGTCGCTGATTCGCCAAGCCGGTGGCGAATCAGCGACATGTTAACTACATCTCAATGGAGTTTTTGATTGGTCGCCTGACGGGCAACAACCTGTTGAATCTCGGCTGGTATCAGGATGTACAGGATTCGTTGCAGGCTTATGACATCAATCTGACGGACCTGCTGGAAGAAGAGATCGACCCGGCGCTGGGTAACGGTGGTCTGGGACGTCTGGCGGCGTGCTGCC                        >  2:173494/1‑238
                                                                                                                                                                                                                                            TTCGCCAAGCCGGTGGCGAATCAGCGACATGTTAACTACATCTCAATGGAGTTTTTGATTGGTCGCCTGACGGGCAACAACCTGTTGAATCTCGGCTGGTATCAGGATGTACAGGATTCGTTGAAGGCTTATGACATCAATCTGACGGACCTGCTGGAAGAAGAGAT                                                                          <  1:496815/167‑1
                                                                                                                                                                                                                                            TTCGCCAAGCCGGTGGCGAATCAGCGACATGTTAACTACATCTCAATGGAGTTTTTGATTGGTCGCCTGACGGGCAACAACCTGTTGAATCTCGGCTGGTATCAGGATGTACAGGATTCGTTGAAGGCTTATGACATCAATCTGACGGACCTGCTGGAAGAAGAGAT                                                                          >  2:496815/1‑167
                                                                                                                                                                                                                                             TCGCCAAGCCGGTGGCGAATCAGCGACATGTTAACTACATCTCAATGGAGTTTTTGATTGGTCGCCTGACGGGCAACAACCTGTTGAATCTCGGCTGGTATCAGGATGTACAGGATTCGTTGAAGGCTTATGACATCAATCTGACGGACCTGCTGGACGAAGAGATCGCCCCGGCGCTGGGTAACGGCGGTCTGGGACGTCTGGCGGCGTGCTTCCTCGACTCAATGGCACATGTCGG  >  2:869945/1‑238
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
AACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGTCCCAGACCACCGTTACCCAGCGCCGGGTCGATCTCTTCTTCCAGCAGGTCCGTCAGATTGATGTCATAAGCCTTCAACGAATCCTGTACATCCTGATACCAGCCGAGATTCAACAGGTTGTTGCCCGTCAGGCGACCAATCAAAAACTCCATTGAGATGTAGTTAACATGTCGCTGATTCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3552065‑3552307
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcgccaAGCCGGTGGCGAATCAGCGACATGTTAACTACATCTCAATGGAGTTTTTGATTGGTCGCCTGACGGGCAACAACCTGTTGAATCTCGGCTGGTATCAGGATGTACAGGATTCGTTGAAGGCTTATGACATCAATCTGACGGACCTGCTGGAAGAAGAGATCGACCCGGCGCTGGGTAACGGTGGTCTGGGACGTCTGGCGGCGTGCTTCCTCGACTCAATGGCAACTGTCGG  <  NC_000913/3552313‑3552082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.