| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1189119 | 59 (0.960) | 4 (0.070) | 4/276 | 8.6 | 6.4% | coding (658/1461 nt) | phoQ | sensory histidine kinase in two‑component regulatory system with PhoP |
| ? | NC_000913 | = 1189142 | 60 (1.010) | coding (635/1461 nt) | phoQ | sensory histidine kinase in two‑component regulatory system with PhoP | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGTCGTAACGTTCGCGTTCACTTTTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAATGGTTAA > NC_000913/1188977‑1189260 | gtGTCGTAACGTTCGCGTTCACTTTTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATggg < 1:432842/142‑1 (MQ=255) gTTCGCGTTCACTTTTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGCCTTCTTTTGCCAGGGCTTCGATGTGGCGTACACTc > 1:390293/1‑143 (MQ=255) ttCGCGTTCACTTTTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCCTCGATGGGGCGTAACCTcc > 1:773666/1‑143 (MQ=255) tCGCGTTCACTTTTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTcca < 1:381109/143‑1 (MQ=255) cgcgTTGACTTTTTTACAATCGGTTCAGGGTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTccac < 2:285586/143‑1 (MQ=255) cgTTCACTTTTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTccacca < 2:378264/143‑1 (MQ=255) gTTCACTTTTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGCGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAg > 1:863338/1‑143 (MQ=255) tttttAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTGGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGgcggcg > 1:153962/1‑143 (MQ=255) tttttAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGgcggcg > 2:1001976/1‑143 (MQ=255) tctatttaTCGGTTGAGGTTTCGTACCAGATTGGTCAGTTGCCGGGTTGTGCCTGGATCGCCCAAGTGGCATGTATGGTGTATGTACGT‑GCGTTCTTCTTTTGCCAAGCCTTCGATGGTGCGTAAACTCCACCAGGCGGCGAc < 2:234544/136‑1 (MQ=255) aaCAGTCGGTTCAGGTTTCGTACCAGACGGGTCAGTCCGCGCGTGGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTGCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCca < 1:675644/143‑1 (MQ=255) cAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAACCTCCACCAGGCGGCGGCCcaca > 2:1046296/1‑143 (MQ=255) aTCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGc < 2:786952/114‑1 (MQ=255) aTCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGc > 1:786952/1‑114 (MQ=255) ttCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCgg > 2:409307/1‑143 (MQ=255) aGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCTATTCGCGGTTCTGTTCT‑TCCCGTTCGCGGCCTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTTCACCAGGCGGCGACCCACAGCAGCGGGAt < 2:745417/143‑1 (MQ=255) tttCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCAc > 1:452308/1‑143 (MQ=255) ctggTACCCGCCTGGTCGGTTCTCGAGTTCTGGATGGATTGTGCAATTGGCGCTTCTTTTCT‑ACCAGTTCGCTGACTTCTTTTGCCAGTGCTTCGCTCGGGAGTGAGTACCTCTATTCGGCGACCCACAGCAGCGGGATCACt < 2:971874/140‑1 (MQ=255) gTACCAGACCGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAAc < 1:1047372/143‑1 (MQ=255) aCCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAAcag < 1:363976/143‑1 (MQ=255) ccAGACTGGTCTGTTCTCGCGTCGCGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTCCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAAcagc < 1:41346/143‑1 (MQ=255) ccAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACGTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAAcagc < 2:210086/143‑1 (MQ=255) ccAGACGGGTCTGTTCTCGCGTTGTGGCTGGATTGCGCAATCCGCGGTTATGTCCT‑TCCCGTTCGCGGACTTCTTGTGCCAGGGCCTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAAcagc < 2:558266/143‑1 (MQ=255) ggTCAGTTCTCGCGTTGTGGCTGGATTGCGCAATTCGCGGTTATGTGCT‑GCCAGCTCAACCACTCCTTTCGCCAGGGCGTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTgg < 2:11180/143‑1 (MQ=255) gTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGc > 2:570249/1‑143 (MQ=255) aGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTga < 1:736237/143‑1 (MQ=255) ttCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTgaga < 1:482730/143‑1 (MQ=255) ttCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTgaga < 1:487096/143‑1 (MQ=255) ttCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTgaga < 1:761009/143‑1 (MQ=255) ctcGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCCCTAACAGCAGATTGGCTGAGAGc > 1:105699/1‑143 (MQ=255) ctcGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGACCACTCACAGCAGATTGGCTGAGAGc > 1:48237/1‑143 (MQ=255) tcGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGca > 2:701708/1‑143 (MQ=255) cgTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGCGCACAt > 1:385532/1‑143 (MQ=255) cTGGGTTGAGAAATTTGCGTGTGTGTTCT‑TCCAGTGGGCGGACGTCGTTTGCCAGGGCTTCGAGGGGGCGTAAGCTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAAc < 1:564795/143‑1 (MQ=255) ttGAGCAATTCGCGGTTAGGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCt < 1:1014749/143‑1 (MQ=255) tGAGCGATTCGCGGTGCTGTGCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTc < 2:567229/143‑1 (MQ=255) gcaGCCATTCGCGGTTATGTGCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTc < 2:343510/141‑1 (MQ=255) gAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCCGCTcc > 1:193674/1‑143 (MQ=255) cAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTCCGATGGGGCGTAAACTCCCCCACGCGGCGACCCACAGCACCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATCAACCAGCTCCAgc > 1:212333/1‑142 (MQ=255) cAATTCGCGGTTATGTTCT‑GCCAGTTCGCGGACTTCGTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGa < 2:113160/143‑1 (MQ=255) aaTTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGGTCACTAACAGCAGATTGACTGCGAGCACGTAGCTACACCAGCCCCAgcc > 1:293229/1‑141 (MQ=255) aTTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTGACAGCAGATTGGCTGAGAGCACATAGCTAAACCAGCTCCAGGcc > 1:776453/1‑143 (MQ=255) ttCGCGGTGATGTTCG‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCa < 1:782059/143‑1 (MQ=255) cgGTTATGTTCT‑TCCAGGTCGCGGACTTCTGTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCAtata < 1:709527/143‑1 (MQ=255) aTGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGacc > 2:151257/1‑141 (MQ=255) tcCAGTTCGCTGAATTCTTTTTCCAGGGCTGCAATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAg < 1:383302/143‑1 (MQ=255) aGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATCCACCAGCTCCAGACCCTATACGAACTTTTTAGCTc > 1:860328/1‑143 (MQ=255) gTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTcc > 1:822496/1‑143 (MQ=255) gcgcgGACGTCTTTGGCCAGGGCTGCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCAc < 2:752252/142‑1 (MQ=255) gcgGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCTGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCCCCAGACCATATAGGCACTATTTAGCACCACCg > 2:892696/1‑143 (MQ=255) gcgGACTTCTTTTGCCAGGGCTTCGATGCAGCGTAAACTACACCAGGCGACCACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAACCCAGCCCCAGCCCATCGCGGAACTTCTTGGccaccccc > 2:479880/1‑136 (MQ=255) cgtcacgtGCCGGGGCCTCAATGGGGCGTAAACGCCACCAGGCGGCGGCCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCGGACCATATAGGAACTTTTTAGCTCCACCGGAATg < 2:773666/136‑1 (MQ=255) ttcttTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGCTTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATgg > 1:678679/1‑143 (MQ=255) cttTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTa > 1:480355/1‑143 (MQ=255) ttttGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCGCCGGACTGGTAt > 1:83544/1‑143 (MQ=255) ttttGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGATACAACGGAATGGTAt > 2:388398/1‑143 (MQ=255) aGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATAGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATACGAACTTTTTAGCTCCACCGGAATGGTATccaccac > 2:416169/1‑143 (MQ=255) cGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAATg < 2:452308/143‑1 (MQ=255) agATCGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAATg < 1:866253/142‑1 (MQ=255) gggCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTACCAGCAGATTGGCTGCGCGCACAGAGATAATCCTGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAATGGTTaa < 1:42648/143‑1 (MQ=255) | TTGTCGTAACGTTCGCGTTCACTTTTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCT‑TCCAGTTCGCGGACTTCTTTTGCCAGGGCTTCGATGGGGCGTAAACTCCACCAGGCGGCGACCCACAGCAGCGGGATCACTAACAGCAGATTGGCTGAGAGCACATAGATAAACCAGCTCCAGACCATATAGGAACTTTTTAGCTCCACCGGAATGGTATCCACCACCACAATGGTTAA > NC_000913/1188977‑1189260 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |