Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =1 (0.020)77 (1.260) 50/284 0.2 98.7% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794891 (0.020)73 (1.190) 44/284 0.3 98.6% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 142 total aligned reads displayed.

GCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTG  >  NC_000913/1979344‑1979628
                                                                                                                                              |                                                                                                                                              
gcaaAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCCTCTGCTATAAATAATCACTTTCATGAAATACCAGATAAGCAATAATTAAACAGACACATACCGCACAACAAAc                                                                                                                                                >  1:485506/1‑143 (MQ=255)
 ggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaattgccccgcttattcgcaccttccCt                                                                                                                                               <  2:1112035‑M1/2‑1 (MQ=255)
  gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa                                                                                                                                              <  2:1016065‑M1/3‑1 (MQ=255)
  gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa                                                                                                                                              <  1:158036‑M1/3‑1 (MQ=255)
  aagaaTGAAATAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAATTCACCGTAAATAATCATCGGCTATAAATAATCCCTTTCATCCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTa                                                                                                                                              <  2:852287/140‑1 (MQ=255)
   aaaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCACCGCACCTCAGCCAGGATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTaa                                                                                                                                             <  1:509746/143‑1 (MQ=255)
   aaaaTGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTaa                                                                                                                                             <  2:26585/143‑1 (MQ=255)
    gataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgccccttccCTAAt                                                                                                                                            <  1:70638‑M1/5‑1 (MQ=255)
      gtgAAACAGGAATAATCGAAATTGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCCATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAgga                                                                                                                                          <  2:460968‑M1/142‑4 (MQ=255)
        aggccttaagtggcgaagaaacggtgtaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAttaca                                                                                                                                        >  2:797851‑M1/135‑141 (MQ=255)
           aCAGGAATAATCGAAATGGGATGTTGCGCACCGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATATTTAAACAGCAACTTACCGCACCACCAACTAAagaaggta                                                                                                                                     >  2:406210‑M1/1‑135 (MQ=255)
             aGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcg                                                                                                                                   <  1:313051‑M1/143‑11 (MQ=255)
                 atcgcgaagacaaggtttaaattggctgtttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaa                                                                                                                               >  2:3961‑M1/126‑143 (MQ=255)
                 ataatCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCCTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATGTTTAACCAGACACTTACCGCACAACAAACTAAggacggagcaagca                                                                                                                               >  2:925225‑M1/1‑129 (MQ=255)
                  tggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaataaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaa                                                                                                                              >  2:413648‑M1/125‑143 (MQ=255)
                  tggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaa                                                                                                                              >  1:1047948‑M1/125‑143 (MQ=255)
                  tactcgaAATGGGACGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaa                                                                                                                              <  1:656187‑M1/140‑16 (MQ=255)
                   ggcgaagaaacgggctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaag                                                                                                                             >  1:948390‑M1/124‑143 (MQ=255)
                      gaagaaacggtctaagtaggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                            >  2:208793‑M1/121‑125 (MQ=255)
                      gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                            <  1:208793‑M1/5‑1 (MQ=255)
                       gAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTATAAACAGACACTTACCGCACAACAAACTAAggaagggacgaacaaatccc                                                                                                                         >  2:302016‑M1/1‑123 (MQ=255)
                       aagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaa                                                                                                                         <  1:547994‑M1/24‑1 (MQ=255)
                          aaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaacaa                                                                                                                      >  2:359557‑M1/117‑143 (MQ=255)
                                   aaaggggctgatgcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACTAAGAAAGGCAACAATCAACttaa                                                                                                             >  2:1102232‑M1/108‑143 (MQ=255)
                                   aaaaaggcatatttaaggcatttacgggagaaaaaagcggcgcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaa                                                                                                             >  2:823479‑M1/108‑143 (MQ=255)
                                    aatagtctgattaaaggaatttacgggggaaaaaatcggctaaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaat                                                                                                            >  2:655508‑M1/107‑143 (MQ=255)
                                         caGTTAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                       <  2:684987‑M1/143‑39 (MQ=255)
                                         caGTCAAAATACCTCACCGTAAATACTCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                       <  1:141994‑M1/143‑39 (MQ=255)
                                          ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat                                                                                                      >  1:849785‑M1/101‑143 (MQ=255)
                                            tCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCAATTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcaggtttatc                                                                                                    >  1:870462‑M1/1‑102 (MQ=255)
                                                 aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGCAAGGCAACAATCCACTTAATGTTAacgaaaagt                                                                                               <  2:777150‑M1/50‑4 (MQ=255)
                                                 aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAGTCAACTTAATGTTAATGAAATGt                                                                                               <  1:35380‑M1/50‑1 (MQ=255)
                                                    aCTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACTGTCATTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag                                                                                            <  1:32699‑M1/143‑50 (MQ=255)
                                                       tttacgggagaaaaagtcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACa                                                                                         >  2:435704‑M1/88‑143 (MQ=255)
                                                       tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTACTGTTAATGAAATGTATTACa                                                                                         <  2:34755‑M1/56‑1 (MQ=255)
                                                       tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACa                                                                                         <  1:766354‑M1/56‑1 (MQ=255)
                                                        aCCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgaagccat                                                                                        >  2:346207‑M1/1‑90 (MQ=255)
                                                         tacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTacaaa                                                                                       <  2:84909‑M1/58‑3 (MQ=255)
                                                             ggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATAtt                                                                                   >  1:964983‑M1/82‑143 (MQ=255)
                                                              gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTa                                                                                  >  1:271750‑M1/81‑143 (MQ=255)
                                                              aataatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca                                                                                  >  1:716576‑M1/1‑84 (MQ=255)
                                                               ggaaaaaatcggctcaagcatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTaa                                                                                 >  2:299243‑M1/80‑143 (MQ=255)
                                                                 aatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                               <  1:1018626‑M1/143‑63 (MQ=255)
                                                                 aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAcc                                                                               <  1:956438‑M1/66‑1 (MQ=255)
                                                                   gaaggcggctcaaacacgtagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCAc                                                                             >  2:480081‑M1/76‑143 (MQ=255)
                                                                   aaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCAc                                                                             >  1:867578‑M1/76‑143 (MQ=255)
                                                                    aaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACt                                                                            <  1:498340‑M1/69‑1 (MQ=255)
                                                                       tttctatAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc                                                                         <  2:653451‑M1/140‑69 (MQ=255)
                                                                       tcggcttaatgatgaagaaattaaatcactgattcagctgagaagaatttccccgcttattcgcaccttctCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGt                                                                         >  2:113736‑M1/72‑143 (MQ=255)
                                                                       cTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc                                                                         <  1:63887‑M1/143‑69 (MQ=255)
                                                                        cggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTGTAACATATATTAACCACTTGtt                                                                        <  2:830395‑M1/73‑1 (MQ=255)
                                                                          gctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACTAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTa                                                                      <  1:557422‑M1/75‑1 (MQ=255)
                                                                             tacataatcacTTTCATGCAATACCAGATAGGTGATTTTTACTCCGACTCGTTCCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagt                                                                   <  2:1024886‑M1/140‑75 (MQ=255)
                                                                              aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCCCTTGTTTAAtgg                                                                  <  2:769891‑M1/79‑2 (MQ=255)
                                                                              aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGc                                                                  <  2:522619‑M1/79‑1 (MQ=255)
                                                                                ataatCACTTGTATCCGATACCGAATAAGCTATTTTGAAACAGGCACTTACCGCACAACAAACTAAggaaggtgcgagcaagtccctgatatgggatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat                                                                <  2:1038568‑M1/143‑78 (MQ=255)
                                                                                 taatCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                                                               <  2:142424‑M1/143‑79 (MQ=255)
                                                                                 taatCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                                                               <  2:713504‑M1/143‑79 (MQ=255)
                                                                                 gaatcACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                                                               <  2:1010124‑M1/142‑79 (MQ=255)
                                                                                    tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaac                                                            <  2:945590‑M1/143‑82 (MQ=255)
                                                                                      agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATc                                                          <  1:724405‑M1/87‑1 (MQ=255)
                                                                                         ctcATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacc                                                       <  2:817402‑M1/142‑87 (MQ=255)
                                                                                              gCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc                                                  >  2:631355‑M1/1‑52 (MQ=255)
                                                                                                    tgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTc                                            >  1:592271‑M1/43‑143 (MQ=255)
                                                                                                    tgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTAAAATATTTTc                                            <  2:374036‑M1/101‑1 (MQ=255)
                                                                                                      aGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtg                                          >  2:476132‑M1/1‑44 (MQ=255)
                                                                                                        aTAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggcaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa                                        <  1:354782‑M1/143‑102 (MQ=255)
                                                                                                           gccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAAt                                     <  1:765362‑M1/108‑1 (MQ=255)
                                                                                                             cTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag                                   >  1:1013806‑M1/1‑37 (MQ=255)
                                                                                                              tATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagc                                  <  1:439821‑M1/143‑108 (MQ=255)
                                                                                                                  ggcaaacagACACTTACCGCACAACCACCTAAggaaggtgcgaacaagtccctgatatcagatcatggttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcaacagta                              >  2:509602‑M1/4‑32 (MQ=255)
                                                                                                                   ttAAACGGACACTGACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccacagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaa                             <  1:122723‑M1/143‑113 (MQ=255)
                                                                                                                   gaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTg                             <  1:478812‑M1/116‑1 (MQ=255)
                                                                                                                      tttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGaaa                          <  1:688139‑M1/119‑1 (MQ=255)
                                                                                                                          gACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt                      <  1:365979‑M1/143‑120 (MQ=255)
                                                                                                                          cccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATtat                      <  1:675923‑M1/123‑1 (MQ=255)
                                                                                                                          cccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTACTTATAATTACATTTGAAATtat                      <  2:1110341‑M1/123‑1 (MQ=255)
                                                                                                                          cccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTATCTTATAATTACATTTGAAATtat                      <  2:988700‑M1/123‑1 (MQ=255)
                                                                                                                             gcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATg                   <  1:311420‑M1/126‑1 (MQ=255)
                                                                                                                                tcccgcACATCAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagatcagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacc                <  2:951405‑M1/141‑126 (MQ=255)
                                                                                                                                tattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAACGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATc                <  2:306804‑M1/129‑1 (MQ=255)
                                                                                                                                  ttcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCAc              <  1:914256‑M1/131‑1 (MQ=255)
                                                                                                                                  atcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACATAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCAc              >  1:172813‑M1/13‑143 (MQ=255)
                                                                                                                                    gCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttggcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaccgtgaattcagcagtaagcgccggcagaccagaa            >  1:545631‑M1/1‑14 (MQ=255)
                                                                                                                                     gcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTCTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCgg           >  2:547994‑M1/10‑143 (MQ=255)
                                                                                                                                     gacaacaaACTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaa           <  2:756056‑M1/142‑131 (MQ=255)
                                                                                                                                       accttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGCATTTGGACTCTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGa         <  1:1056169‑M1/136‑1 (MQ=255)
                                                                                                                                       accttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGa         <  1:1092252‑M1/136‑1 (MQ=255)
                                                                                                                                         acaaACTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagag       <  1:665417‑M1/143‑135 (MQ=255)
                                                                                                                                         acaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagag       >  1:601364‑M1/1‑9 (MQ=255)
                                                                                                                                             cCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACAACTTGTTTAATGCGGAGAATCAGTACAATATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGAtt   <  2:513912‑M1/142‑1 (MQ=255)
                                                                                                                                             aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaggttt   >  2:11840‑M1/1‑5 (MQ=255)
                                                                                                                                             aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccaacagtgaattcagcagtaagcgccgtcagaccagaaaagcaagtt   >  2:693501‑M1/1‑5 (MQ=255)
                                                                                                                                             aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcagcatgagtcatcaacttaccttcggcgacagcgaacgcaccagcaagcgccgtcagcccagaacagcgatct   >  2:381526‑M1/1‑5 (MQ=255)
                                                                                                                                             aCTAATAAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtgatt   <  1:239062/143‑1 (MQ=255)
                                                                                                                                              cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgacttcagcagtaagcgccgtcagaccagcaacgagagttt  >  2:291149‑M1/1‑4 (MQ=255)
                                                                                                                                              cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt  <  2:255631‑M1/143‑140 (MQ=255)
                                                                                                                                              cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt  >  1:408315‑M1/1‑4 (MQ=255)
                                                                                                                                              cTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtgcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt  >  2:235711‑M1/1‑4 (MQ=255)
                                                                                                                                              cTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtgattg  <  2:158036/143‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                              
GCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTG  >  NC_000913/1979344‑1979628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.