Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,977,562	Δ33 bp	coding (964‑996/1032 nt)	galR →	galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2977562	2977594	33	58 [0]	[0] 58	galR	galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2977561	0 (0.000)	52 (0.870)	47/276	0.2	100%	coding (963/1032 nt)	galR	galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor
	?	NC_000913	2977595 =	0 (0.000)					coding (997/1032 nt)	galR	galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor

GTGCTGGTGTCACGCTATGTGCGTCCGCGCCTGACCACCGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCCGTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCA  >  NC_000913/2977421‑2977703                                                                                                                                             |                                                                                                                                               gtgCTGGTGTCACGCTATGTGCGTCCGCGCCTGACCACCGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtc                                                                                                                                              >  2:969192‑M1/1‑141 (MQ=255)       gtgtCACGCTATGTGCGTCCGCGCCTGCCCGCCGTGCGTCACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctgga                                                                                                                                        <  2:754213‑M1/143‑9 (MQ=255)        tgtgACGCTATGGGCGTCCGCGCCTGACCACCGTGCGTCACCCGATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCGCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggag                                                                                                                                       <  2:177640‑M1/143‑10 (MQ=255)                  tgtgCGTTCGCGTCTGACCACCGTGCGTTAGCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatc                                                                                                                             <  1:1048973‑M1/143‑20 (MQ=255)                    tgCGTCCGCGCCTGACCACCGTGCGTTACCCAATCGTGACGATGGCGACCACGGCTGCCTAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcat                                                                                                                           <  1:932178‑M1/143‑22 (MQ=255)                     gCGTCCGCGCCTGACCAGCGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGTTTTGGCTGATAATCGCCTTCTTCCGGAAATCACTAATGTCTTTAGTCCGgcgctggaggcaagtcatcatg                                                                                                                          <  1:483323‑M1/143‑23 (MQ=255)                      cGTCCGCGCCTGACCACCGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTCCCGAACTGTCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggcggcaagtcatcatgc                                                                                                                         >  1:416957‑M1/1‑120 (MQ=255)                          cgcgCCTGACCACCGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTCATGTCGTTAGTCCGtccccggaggcaagtcaacatgcaaac                                                                                                                     >  2:336133‑M1/1‑116 (MQ=255)                           gcgcCTGACCACCGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaacca                                                                                                                    >  1:423953‑M1/1‑115 (MQ=255)                             gcCTGACCACCGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTGCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcagggcctcctgccaccagc                                                                                                                  >  1:723600‑M1/1‑113 (MQ=255)                               cTGACCCCCGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcga                                                                                                                <  1:189812‑M1/143‑33 (MQ=255)                                 gACCACCGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCCGCCGAACTGGCTTTGGCGCTGGCGGATAATCGACCTCTCCCGGAAATAACTAATGTCTTTAGTCCGtcgatagaggcagagcatcatgcaacaaacgact                                                                                                              >  2:275339‑M1/1‑109 (MQ=255)                                    caccGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaac                                                                                                           >  1:225783‑M1/1‑106 (MQ=255)                                       cGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACCAATGTCTTTAGTCCGtcgctggcggcacgtcaccatgccaccagccaccaacccc                                                                                                        >  1:467761‑M1/1‑103 (MQ=255)                                        ttgCGTTACCCGATCGTGACGATGGCGCCCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgca                                                                                                       <  2:146526‑M1/142‑42 (MQ=255)                                             ttACCCAATCGGGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggagccaagtcatcatgcaaccagcgactaaccgcagttaa                                                                                                  <  1:720635‑M1/143‑47 (MQ=255)                                              tACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaa                                                                                                 <  1:961725‑M1/143‑48 (MQ=255)                                              tACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggaaagtcatcatgcaaccagcgactaaccgcagttaaa                                                                                                 <  2:611900‑M1/143‑48 (MQ=255)                                              tACCCAAGCGTGACGATGCCGGCCCAGGCTGCCGAACTGGTTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAAGCACTGTTGTCTGTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgtctaaccgcagttaaa                                                                                                 <  2:939549‑M1/143‑48 (MQ=255)                                                   aaTCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaat                                                                                            >  2:246221‑M1/1‑91 (MQ=255)                                                      cGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattcc                                                                                         >  1:571500‑M1/1‑88 (MQ=255)                                                               ggCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagg                                                                                >  1:464435‑M1/1‑79 (MQ=255)                                                                      cAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCGTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattctt                                                                         <  2:296216‑M1/143‑72 (MQ=255)                                                                           tGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgcccgtcattcttcgatg                                                                    >  1:163487‑M1/1‑67 (MQ=255)                                                                           tGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaatccttcgctg                                                                    >  2:402302‑M1/1‑67 (MQ=255)                                                                             ccGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggt                                                                  >  1:820324‑M1/1‑65 (MQ=255)                                                                                tacTGGCTTTGGCGCTGGCGGATAACCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctg                                                               <  2:273925‑M1/142‑82 (MQ=255)                                                                                 aCTGGCTTTGGCGCTGGCGGATAGTCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctgg                                                              <  2:89817‑M1/143‑83 (MQ=255)                                                                                  ctggctggGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggc                                                             <  1:9865‑M1/143‑84 (MQ=255)                                                                                     gCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgac                                                          >  1:605325‑M1/1‑57 (MQ=255)                                                                                           gcgcTGGCGTATAATCGCCCTCTCCCGGAAATCATTAATGTTTTTTGTCCGacactggaggcaagtcaacaggcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaa                                                    <  1:1055792‑M1/143‑93 (MQ=255)                                                                                           gcgcTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgcctaaccgcagtcaaagcaattccagcgccagtaactcttcgacggtctggcgacggcgaa                                                    >  2:965002‑M1/1‑51 (MQ=255)                                                                                             gcTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggctaatc                                                  >  2:410337‑M1/1‑49 (MQ=255)                                                                                                ggCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaac                                               <  1:859371‑M1/143‑98 (MQ=255)                                                                                                   tgaTAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCTtcgctgtaggcaagtcatcatgcaacaagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgc                                            <  1:726664‑M1/142‑101 (MQ=255)                                                                                                     aTAATCGCCCTCTCCCGGAAAGCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccggcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgcgc                                          <  2:476348‑M1/143‑103 (MQ=255)                                                                                                         tCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaaggcatcatgcaaccagcgactaaccgcaggtaaagcaattccagcgccagtaattctccgatggtctggcgacggcgactcaaccgcgccagc                                      >  2:425118‑M1/1‑37 (MQ=255)                                                                                                            cccTCTCCCGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgcgcctgacca                                   >  1:1074914‑M1/1‑34 (MQ=255)                                                                                                              cgcggccggaagTCAGTAATGTGTTTAGTCCGtctctggaggcaagtcatcatgcagccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgcgcctgaccatt                                 <  2:326851‑M1/138‑112 (MQ=255)                                                                                                                  cccGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgcgcctgaccattatca                             <  1:795291‑M1/143‑116 (MQ=255)                                                                                                                   ccGGAAATCACTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtacttcttcgatggtctcgcgacggcgaatcaaccgcgcctgaccattctcag                            >  1:907905‑M1/1‑27 (MQ=255)                                                                                                                       aaaTCACTAATGTCTTTAGTTCGtcgcttgaggcaattcatcatgcaacctgcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgcgcctgaccattatcaaacag                        <  1:273662‑M1/143‑121 (MQ=255)                                                                                                                             cTAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaacgcaattccagcgccagtaattcttcgatggtctggcgccgccgcctcaaccgcgcctgcccattatcaaccagaacttc                  >  2:382442‑M1/1‑17 (MQ=255)                                                                                                                              tAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcacccgcgcccgaccattatcacaccgaacttct                 >  1:677731‑M1/1‑16 (MQ=255)                                                                                                                              tAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaatgcttcgatggtctggcgacggcgaatcaaccgcgcctgaccattatcaaacagaacttct                 >  2:545813‑M1/1‑16 (MQ=255)                                                                                                                              tAATGTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccccagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgcgcctgaccattatcacacaggacttct                 >  1:490632‑M1/1‑16 (MQ=255)                                                                                                                               aaTGTCTGTAGTGCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgcgcctgaccattatcaaacagaacttctg                <  2:685317‑M1/143‑129 (MQ=255)                                                                                                                                  gTCTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattcaagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgcgcctgaccattatcaaacagagcttctggta             >  2:1033927‑M1/1‑12 (MQ=255)                                                                                                                                   cggctggtccgtcgctgtaggcaagtcatcatccgaccagcgagtaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgcgcctgaccattatcaaacagaacttctggtaa            <  2:103116‑M1/137‑133 (MQ=255)                                                                                                                                    cTTTAGTCCGtcgctggaggcaagtcatcatgcaaccagcgaccaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgcgcctgaccattatcaaacagaacttctggtaac           <  1:161745‑M1/143‑134 (MQ=255)                                                                                                                                     tttAGTCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgcgcctgaccatcatcaaacgggacttctggtaaca          >  2:936461‑M1/1‑9 (MQ=255)                                                                                                                                     ttcagtcCGgcggtggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgcgcctgaccattatcaaacagaacttctggtaaca          <  1:732167‑M1/140‑135 (MQ=255)                                                                                                                                       ttgtgcgtcgctggagggacgtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgcgcctgaccattatcaatcagaacttctggtaacagc        <  2:877980‑M1/138‑137 (MQ=255)                                                                                                                                          tCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttcaagcaattcccgcgccaggaattgttcgctggtctggagacggcgaatcaacagcgactgaccattatcaacaagagcttctggtaacagcgga     >  2:160160‑M1/1‑4 (MQ=255)                                                                                                                                          tCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgcgcctgaccattatcaaacagaacttctggtaacagcgga     <  1:270915‑M1/143‑140 (MQ=255)                                                                                                                                          tCCGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgcgcctgaccattatcaaacagaacttctggtaacagcgga     <  2:605325‑M1/143‑140 (MQ=255)                                                                                                                                            cGtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgcatcaaccgcgcctgaccattatcaaacagaactgctggtaacagcggccg   >  1:1055257‑M1/1‑2 (MQ=255)                                                                                                                                             gtcgctggaggcaagtcatcatgcaaccagcgactaaccgcagttaaagcaattccagcgccagtaattcttcgatggtctggcgacggcgaatcaaccgcgcctgacaattatcaaacagaacttccagtaacagcggacgg  >  2:750707‑M1/1‑1 (MQ=255)                                                                                                                                             |                                                                                                                                               GTGCTGGTGTCACGCTATGTGCGTCCGCGCCTGACCACCGTGCGTTACCCAATCGTGACGATGGCGACCCAGGCTGCCGAACTGGCTTTGGCGCTGGCGGATAATCGCCCTCTCCCGGAAATCACTAATGTCTTTAGTCCGACGCTGGTACGTCGTCATTCAGTGTCAACTCCGTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCA  >  NC_000913/2977421‑2977703

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑