Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,132,787	A→C	I204S (ATC→AGC)	wcaA ←	putative glycosyl transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,132,787	0	A	C	100.0%	181.6 / NA	58	I204S (ATC→AGC)	wcaA	putative glycosyl transferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (29/29);  total (29/29)

GATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGATCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTT  >  NC_000913/2132648‑2132926                                                                                                                                            |                                                                                                                                            gATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGTGGTATAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGctct                                                                                                                                          <  1:336252/143‑1 (MQ=255)  aTCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTg                                                                                                                                         >  1:609316/1‑143 (MQ=255)   tCTGGTAGGGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCTGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGc                                                                                                                                        <  2:417610/143‑1 (MQ=255)      ggTAGAGGTCAGACAGCGGATCTTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTGCCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTc                                                                                                                                     <  2:566122/143‑1 (MQ=255)      ggTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAACGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTc                                                                                                                                     >  1:910452/1‑143 (MQ=255)       gTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCCGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCg                                                                                                                                    >  1:919829/1‑143 (MQ=255)       gTAGAGGGTAAACAGCTGATATTTTTTGCAGCAGGGTACGAATGTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTGCACCGTGATGGATAGGCAGGCTCTGCGTCg                                                                                                                                    >  2:913694/1‑143 (MQ=255)          gaccgTAAACACCTGATAGTTTTTGCTGGCGCGGTCCAATTTGTGATTGGGTTTGGGGTGCAATCGAAAATACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCct                                                                                                                                 <  1:1108024/139‑1 (MQ=255)              gTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCtcttc                                                                                                                             <  1:853759/143‑1 (MQ=255)               tAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCCCCGCGTCCCCtcttcc                                                                                                                            >  2:356076/1‑142 (MQ=255)                   cAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGGTTGATATGCAGGCTCTGCGTCGCCTCTTCCAcgt                                                                                                                        >  1:1018159/1‑141 (MQ=255)                       tGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCa                                                                                                                    >  2:1072241/1‑143 (MQ=255)                        gATATGTTCGGCTGGCGCGGTCGACTTTGTCTTTGTGCTTGCGGTATAAGTGGAAGTTCCCCGTGAATTTTTTCGTTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACttcacac                                                                                                                   <  2:925959/143‑6 (MQ=255)                         cgatTTGTTTCTGGAGCGGTAGAACTTGACGGTTTGCTGGGGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACg                                                                                                                  <  1:201797/141‑1 (MQ=255)                         atatTTTGTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTATTTTCCACg                                                                                                                  <  2:1039317/143‑1 (MQ=255)                            tttttgGCGGGGGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGtt                                                                                                               <  2:704371/143‑1 (MQ=255)                               gttGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGc                                                                                                            <  1:401989/142‑1 (MQ=255)                                 tGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCg                                                                                                          <  1:293971/143‑1 (MQ=255)                                       cgcgGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTTTTTTGGACGCACCGCCGTACTcc                                                                                                    >  2:959650/1‑143 (MQ=255)                                          ggTCGATTTTGTCTTTGTGCTTGCGGTAATATTGGTATTTCTCGTAGAATTTTTTCGGTGACGAGGTACTCTGCAGGGCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTccacc                                                                                                 <  1:833134/143‑1 (MQ=255)                                          ggTCGAATTTGTCTTTGTGCTTACGCTAAATGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCCGGCTCTGCGTCACCCCATCTACTTTCCACGGTTCGACCTACCcaacc                                                                                                 >  2:137084/1‑143 (MQ=255)                                           gTCGTATTGGTCTTTGTGCTTGCGGTAAAAGTGGAAGTTCCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTccacca                                                                                                <  2:106252/143‑1 (MQ=255)                                                agtggccTTGGTGCCTGTGGCAATAGTAGAACGCCCCGCAGTATTTTTTCGGGGACGAGGTGATCTCCATTTCTCCGTGATTTCTATGCAGGCTCTGCGTCGCCCCTTCTACTTTCCTCGGTTCGCCGTACTCCACCACCATc                                                                                           <  2:99529/137‑1 (MQ=255)                                                     tCTTTGTGCTTGCGGTAAAGGGGGGAGTACGCGGGGGTCTATTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAg                                                                                      <  2:228068/143‑1 (MQ=255)                                                        ttGTGCGTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTGACCGAGATTAACATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGaa                                                                                   <  2:971126/143‑1 (MQ=255)                                                            ggtggCGGTGAAAGGGGCAGTAGCTGGAGAATTTTTTCGGTGACGAGGTGATCTGCAGGTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTGGCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATg                                                                               <  2:973645/139‑1 (MQ=255)                                                             cTTGCGGCACAGGGGGGAGTGCCCGGAGAATTTTTTCGGTGCCGAGGTGATCTGCATTTCACCGTGATCGATATTCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGt                                                                              <  2:1107480/143‑1 (MQ=255)                                                               tGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCg                                                                            <  1:290043/143‑1 (MQ=255)                                                                gCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGt                                                                           <  1:669160/143‑1 (MQ=255)                                                                  ggTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTaa                                                                         <  1:884827/143‑1 (MQ=255)                                                                         gTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCtgtg                                                                  >  1:817514/1‑143 (MQ=255)                                                                          tGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGc                                                                 >  1:270065/1‑143 (MQ=255)                                                                                  cccGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCa                                                         <  1:13903/143‑1 (MQ=255)                                                                                     ggAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGtt                                                      <  1:593787/143‑1 (MQ=255)                                                                                          aTTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATGCGCCGGCTCTTCGTCGCATATTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTa                                                 <  1:465215/143‑1 (MQ=255)                                                                                          aTTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTCCCACGGTTCGCAGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTa                                                 <  1:466253/143‑1 (MQ=255)                                                                                           ttttttCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCCGGCTCTGCGTCGCCTCCTCTACTTTCCACGGTTCGCCGTACCTCACCACCATCCGCAGGACGATGTCGCACCCCTGTGCCGCTTACAGtagagcat                                                >  2:377833/1‑136 (MQ=255)                                                                                           ttttctCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTAt                                                >  2:703189/1‑143 (MQ=255)                                                                                                tCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATGTGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGCTACCGaac                                           <  2:851512/143‑1 (MQ=255)                                                                                                tCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGaac                                           <  1:651079/143‑1 (MQ=255)                                                                                                              aTCTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACAGTCTTTGaa                             >  1:736222/1‑143 (MQ=255)                                                                                                                cTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGACGATGTCGTAATCCTGTGCCGCTTTCCGTTCGGTATCGCTCCACCCCTCTTTgctac                           >  1:255626/1‑139 (MQ=255)                                                                                                                cTGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAAc                           >  1:1098637/1‑143 (MQ=255)                                                                                                                 tGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGACGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTgcagcg                          >  2:191405/1‑138 (MQ=255)                                                                                                                 tGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTCTgcatcg                          >  1:518527/1‑138 (MQ=255)                                                                                                                 tGCATTTCACCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCATGTGCAGCTTTCCGTTCGGTATCGAAAAAAACATATTTGAAACg                          >  2:619439/1‑143 (MQ=255)                                                                                                                         aCCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCCGTTCGGTATCGAACAAACACTCTTTGAAACGCCCTGccc                  >  2:373457/1‑143 (MQ=255)                                                                                                                         aCCGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTACCGAACAAACACTCTTTGAAGCGCCATGacc                  >  1:134803/1‑143 (MQ=255)                                                                                                                          ccGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTGTCGAACAAACACTCTTTGCCACGCCATGCCCa                 >  1:46398/1‑143 (MQ=255)                                                                                                                           cGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGACGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAg                >  2:1055770/1‑143 (MQ=255)                                                                                                                           cGTGATTGATATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCACTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAg                >  1:287778/1‑143 (MQ=255)                                                                                                                            gTGATTGATATGCAGGCTATGCGTCGCCTCGTCTACTGTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAgg               <  1:300326/143‑1 (MQ=255)                                                                                                                                ttgatCTGCAGCCTGTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGGACTCCACCACCACCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGCAACGCCATGCCCAGGTaaa           <  2:546371/143‑1 (MQ=255)                                                                                                                                ttgatATGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTaaa           <  1:913449/143‑1 (MQ=255)                                                                                                                                   atatGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTCTCGACCAAACACTCCTTGAAACGCCATGCCCAGGTAAAGAc        >  1:877191/1‑143 (MQ=255)                                                                                                                                   atatGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTGGGACCGCCATGCCCAGGTAAAGAc        >  2:578088/1‑143 (MQ=255)                                                                                                                                    tatGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACCAACCCTCTTTGTCCCGCCCTGCCCCCGTAATGAcc       >  1:117751/1‑143 (MQ=255)                                                                                                                                     atGCAGGCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACCCCACCACCATCCGCCGGAAGATGTCGTCATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACCCTCTTTGAAACGCCATGCCCCGGTCCAGAccc      >  1:27369/1‑142 (MQ=255)                                                                                                                                         aGGCTCTGCGTCGCCTCTTCTACTTTCCACTGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTAGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTCAAGACCTggct  >  1:844076/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                            GATCTGGTAGAGGGTAAACAGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCGGTGACGAGGTGATCTGCATTTCACCGTGATTGATATGCAGGATCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTT  >  NC_000913/2132648‑2132926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑