New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2868820	40 (0.930)	3 (0.070)	3/272	6.4	7.8%	intergenic (‑67/+73)	nlpD/pcm	activator of AmiC murein hydrolase activity, lipoprotein/L‑isoaspartate protein carboxylmethyltransferase type II
	?	NC_000913	= 2868830	33 (0.800)					intergenic (‑77/+63)	nlpD/pcm	activator of AmiC murein hydrolase activity, lipoprotein/L‑isoaspartate protein carboxylmethyltransferase type II
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTGCCAGCCATAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGACAAAGCGCACGGCCTCCACGGTATCGATAATAAATTCG  >  NC_000913/2868680‑2868959                                                                                                                                             |                                                                                                                                            ccTGCCAGCCATAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTACTAACCAGTGACATAATTACCGTGCAAGGCACCCGACTGAACACt                                                                                                                                           >  2:417142/1‑143 (MQ=255) ccTGCCAGCCATAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACt                                                                                                                                           >  1:243188/1‑143 (MQ=255) ccTGCCAGCCATAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAAGTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAAGACt                                                                                                                                           >  1:243220/1‑143 (MQ=255)     ccagccaTAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGACAAATTGGTTAATAACCAGTGACATAATTACCTTGCAAGGCACCCTACTGGACACTggca                                                                                                                                       >  1:46748/1‑141 (MQ=255)        gccaTAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATACTTACCGTGCAAGGCACCCTACTGAACACTGGaaacg                                                                                                                                    >  2:494879/1‑141 (MQ=255)          caTAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGAt                                                                                                                                  <  1:429300/143‑1 (MQ=255)            tAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCCCCCTACTGAACACTGGAAACGATGt                                                                                                                                >  1:374915/1‑143 (MQ=255)            tAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGt                                                                                                                                >  1:759104/1‑143 (MQ=255)              gCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCACGGCACCCGACCGAACACTAGAAAAGAtacta                                                                                                                              >  2:565429/1‑139 (MQ=255)                      aGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCACGGCACCCTACTGAACACTGGACAAGATGGTCCCGATACg                                                                                                                      >  2:605485/1‑143 (MQ=255)                       gTGACAACGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGc                                                                                                                     <  2:473805/143‑1 (MQ=255)                         ccgttcgCCGCATTGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCCTCCCACCCACCGTACTGTACGTTGGAAAAGATGTTCACGATACGCTg                                                                                                                   >  1:324659/7‑143 (MQ=255)                           cgaaGCCGGAATGCGGCGAACGGTGAATTTTGTGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATGACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGAc                                                                                                                 <  2:91217/141‑1 (MQ=255)                            aaaGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGAcc                                                                                                                >  1:319837/1‑143 (MQ=255)                                ccGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATCTATCCCCCAGGAAAAATTGGTTAATAACCACTGACATAATTACCGCGCAACGCACCCTACTGCACCCCGGAAAAGATGTTCACGATACCCTAACCTGCg                                                                                                            >  2:516861/1‑143 (MQ=255)                                 cGCAATGCGGCGAATGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAAATGGTTCATGACCAGCGCCATACTTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTAACGATACGCTGACCTGCga                                                                                                           >  2:513335/1‑142 (MQ=255)                                 cGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGATAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACGCAACACTGGAAAAGATGTTCACGATACGCTGACCTGCgg                                                                                                           >  2:762698/1‑143 (MQ=255)                                         ggcgACCGGTCAAGTGTGGGCTTCCCGCGCTCACTTACCCCCCAGCAAAAATTGGTTAAGAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATaa                                                                                                   <  1:646494/143‑1 (MQ=255)                                           cgAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAAcc                                                                                                 >  1:241394/1‑143 (MQ=255)                                             aaCGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAg                                                                                               <  1:340820/143‑1 (MQ=255)                                                    aaTTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAAt                                                                                        <  1:228596/143‑1 (MQ=255)                                                      ttttGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAGTAGCCAGGAGAAATcc                                                                                      >  1:452235/1‑143 (MQ=255)                                                        tggggCTGTCCGCGCTTATTTCTCCCCTAGGAACAATTCGTTCTTAGCCCGTGAAATAAGTGCCCTGCAGGGCACCCTACTGAACGCTTGAAAAGATGTTCACGTTACGCTGTCCTGCGGCAATATAACCAGGAAAAATCCAg                                                                                    <  2:630803/141‑1 (MQ=255)                                                                        gctgtATCACCGAGGAGAAATTGGGTAGTAACCAGTGACATAATTACCGTGCAAGGCACCCTCCTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGttt                                                                    <  2:251014/139‑1 (MQ=255)                                                                                 cccAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAACTCAAGGTATATCCTCACGTTTTAACCCAGc                                                           >  2:742814/1‑143 (MQ=255)                                                                                  ccAGGAAAAATTGGTTAACAACCAGTGACATAAGTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCt                                                          <  1:484021/143‑1 (MQ=255)                                                                                       aaaaaTTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGACAAATCCAGTAGTTTCCTCACGTTTCAAGCCAGCTCAccc                                                     >  2:159667/1‑143 (MQ=255)                                                                                                ttAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTaaa                                            >  1:57118/1‑143 (MQ=255)                                                                                                ttAATAACCAGTGACAGAATGACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTaaa                                            <  1:37487/143‑1 (MQ=255)                                                                                                    caaCCAATGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGa                                        <  1:425351/142‑1 (MQ=255)                                                                                                                    aaCCGGGCAAGGCACCCGACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGACAAAGCGCACGGCCTc                        <  1:667798/142‑1 (MQ=255)                                                                                                                      ccGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGACAAAGCGCACGGCCTCCa                      <  1:417142/143‑1 (MQ=255)                                                                                                                        gTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGACAAAGCGCACGGCCTCCACg                    >  1:250919/1‑143 (MQ=255)                                                                                                                            aaGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGAAGAAATCGCAAGACCTCCACGGTAt                >  2:297011/1‑143 (MQ=255)                                                                                                                            aaGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTAGGGCAAAATGACCAGCAAAATTCTATGTATGTCCTCACGTTTTAAGCCNGAGCACCCCTCACTAAGGGGACAAACCGCCCGGCCTCCAccggat                >  2:93428/1‑138 (MQ=255)                                                                                                                             aGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTACAGGGACAAAGCGCACGGCCCCCAccgcacc               >  2:328103/1‑137 (MQ=255)                                                                                                                                  gccgaaggAACACGGGACAAGATGCTGGCGATACGCTGACCTGCGGCAAGGTAGCCAGTAAAACTCCAGCTATTTCCTCCCGTTTCAGGCGAGCTCCCCCCCCGGCAAAGGGACAAAGCGCACGGCCTCCACGGTATCGataa          <  2:557234/136‑1 (MQ=255)                                                                                                                                  cccTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCCCTAAAGGGACCACGCGCACGGCCTCCACGGGATTGataa          >  1:211181/1‑143 (MQ=255)                                                                                                                                    cTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGACAAAGCGCACGGCCTCCACGGTATCGataata        <  1:328878/143‑1 (MQ=255)                                                                                                                                          aaCACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGACAAAGCGCACGGCCTCCACGGTATCGATAATAAATTCg  >  1:563081/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                            CCTGCCAGCCATAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACGATACGCTGACCTGCGGCAAAATAACCAGGAAAAATCCAGGTATTTCCTCACGTTTTAAGCCAGCTCACCCTTCACTAAAGGGACAAAGCGCACGGCCTCCACGGTATCGATAATAAATTCG  >  NC_000913/2868680‑2868959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.