New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =7 (0.160)38 (1.000) 31/252 0.2 86.2% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 6 (0.160)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

GTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA  >  NC_000913/1209477‑1209759
                                                                                                                                              |                                                                                                                                            
tcagatgctttttctgcattccacccccactgaatgattactgattgctcaagaccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac                                                                                                                                              <  2:366666‑M2/1‑1 (MQ=255)
   gatgcttgtgcggcattccacccccactgaatgagtactgattgctcaataccaccaatcagaaccggtatagctatgaagccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGtt                                                                                                                                           <  1:203335‑M2/4‑1 (MQ=255)
    atgcttttgcggcattccccccccaccgactgattactgattgctcaatacccccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGttt                                                                                                                                          <  2:27626‑M2/5‑1 (MQ=255)
          ttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagcctttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaa                                                                                                                                    <  1:748041‑M2/11‑1 (MQ=255)
            tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt                                                                                                                                  >  1:66174/1‑143 (MQ=255)
               gcatgtcacccccactgaatgagtactgatcgctcgacggtatcaaacataaccgggatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTAGGAAAATgaa                                                                                                                               <  2:160913‑M2/16‑1 (MQ=255)
                     caccctcactaaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagtcttgctccttctcccaaaccaaTGCTAATGAAACTGAAGAAATa                                                                                                                         >  2:778535‑M2/122‑143 (MQ=255)
                     cacccccactgaatgattactgattgctcaataccaccaatcataaccggtctagctatgaaaccggcgcgccctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTCTATGAAAATGAAGAAATa                                                                                                                         >  2:177928‑M2/122‑143 (MQ=255)
                        ccccactgaatgattcctgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttctgctcctactcccaaaactaCGTTTATGAAAATGAAGAAATAACa                                                                                                                      <  1:783545‑M2/25‑1 (MQ=255)
                         cccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGCAGAAATAAcac                                                                                                                     >  1:318571‑M2/118‑142 (MQ=255)
                          gTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACATTGATGAAAAAGAAGAAATaagaag                                                                                                                    >  2:287177/1‑143 (MQ=255)
                                aatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccacaccaaCGCTTATGAAAATGACGAAATACCACGCAACTg                                                                                                              >  1:165163‑M2/111‑143 (MQ=255)
                                aatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATg                                                                                                              <  1:702607‑M2/33‑1 (MQ=255)
                                      tactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAACTGAAGAAATAACACGCAAATGGcatca                                                                                                        >  2:31111‑M2/105‑143 (MQ=255)
                                           actgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt                                                                                                   <  1:751593‑M2/44‑1 (MQ=255)
                                                gCACCATTGCATTGCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt                                                                                              <  2:622888/143‑1 (MQ=255)
                                                        tccaatcagaaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg                                                                                      <  1:195493‑M2/57‑1 (MQ=255)
                                                        atctctcatatccagtatagctaggaaacgggtgtgtcctaatgtatccgttgcggcattgagttttgcgccttctcacaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg                                                                                      <  1:413301‑M2/57‑1 (MQ=255)
                                                        accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg                                                                                      <  1:209345‑M2/57‑1 (MQ=255)
                                                        accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg                                                                                      >  1:661257‑M2/87‑143 (MQ=255)
                                                        accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagctttgctccttttcctaaaccaaCGTTTATGAACATGAAGACATAACAAGAAACTGGCATCATTACTGATTGTACCAggg                                                                                      >  2:351519‑M2/87‑143 (MQ=255)
                                                          caatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg                                                                                    >  1:639743‑M2/85‑143 (MQ=255)
                                                          caatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgcggg                                                                                    >  2:418567‑M2/85‑143 (MQ=255)
                                                                taaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa                                                                              >  1:533868‑M2/79‑143 (MQ=255)
                                                                  accggtatagctatgaagccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccacccaaaCGGTAATGAAAATGAAGAAATAAAAAGCAAATGGCATAATTCCTGCTTTTACCAGGGGGATTTAACa                                                                            <  1:167008‑M2/67‑1 (MQ=255)
                                                                    cggtatagctatgaaaccggtgcgtcctcatgtagccgttgctgccatgaaatttatgccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATg                                                                          <  1:775663‑M2/69‑1 (MQ=255)
                                                                    cggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTAATGAAAATGGGGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAAGAGAGGAAATTAacaag                                                                          >  1:251735‑M2/75‑141 (MQ=255)
                                                                     ggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGc                                                                         >  1:83406‑M2/74‑143 (MQ=255)
                                                                            ctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                                                  <  1:412073‑M2/77‑1 (MQ=255)
                                                                             tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc                                                                 >  1:124541‑M2/66‑143 (MQ=255)
                                                                             tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc                                                                 >  1:437988‑M2/66‑143 (MQ=255)
                                                                                  aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccacCGTGTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATtggctgcct                                                            >  2:16856‑M2/61‑139 (MQ=255)
                                                                                   accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTa                                                           <  2:10344‑M2/84‑1 (MQ=255)
                                                                                   accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTa                                                           >  1:410246‑M2/60‑143 (MQ=255)
                                                                                              ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac                                                <  2:661257‑M2/95‑1 (MQ=255)
                                                                                              aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac                                                >  1:432612/1‑143 (MQ=255)
                                                                                                     agccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGGTTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATTAc                                         >  1:727075‑M2/42‑143 (MQ=255)
                                                                                                         gttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGAGTATCAACAAATAACCAGa                                     >  2:591366‑M2/38‑143 (MQ=255)
                                                                                                           acCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAGGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCACCAAATGCCCAGacc                                   >  1:712158/1‑141 (MQ=255)
                                                                                                             ctgcattcaagtttgctcctcgtcccacaccaaCGTTTATGAGAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAacac                                 <  1:351519‑M2/110‑1 (MQ=255)
                                                                                                             cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAacac                                 >  1:159039/1‑143 (MQ=255)
                                                                                                               gcattgagtgttgcgcctactcctgagccaaCGTTTATGAAAATGAAGAAATAACAATCATATGGTATCATTCCTATTTGTTCCATGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAg                               <  2:722186‑M2/112‑1 (MQ=255)
                                                                                                                             tccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCTTATCAACAAATGAACAGAACACAGatctacaaagcaaa                 >  1:138263‑M2/18‑137 (MQ=255)
                                                                                                                             tccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAAAACACAGATCTACAACATAAt                 >  1:409620‑M2/18‑143 (MQ=255)
                                                                                                                              ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTGTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCTTATCAACAAATGACCAGAACCCAGACCTACAACGTAATg                >  1:674917‑M2/17‑143 (MQ=255)
                                                                                                                               cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATTATTCCTGCTTTTAATAGGCCCATTGAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAACCGAACACAGAGCTATCACGTACTgc               >  2:275486‑M2/16‑143 (MQ=255)
                                                                                                                               cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgc               >  1:535609‑M2/16‑143 (MQ=255)
                                                                                                                               cTTCTCCCAAACCAACGATTATGAAAAACACATACTCTTCAGCATTTGGCATCATTCCTGCTTTGATCAGGGGGATTTAACATGCTAATTGGCTATGTACGCGTATCGAGAATTGTTCAGTACACAGATCTACAACGTAATgc               >  2:681413/1‑143 (MQ=255)
                                                                                                                                   tcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGCGGATCTAACATGCTTATTGGCTCTTTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGctc           >  2:473838‑M2/12‑142 (MQ=255)
                                                                                                                                   tcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCGCCCACCAAGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTg           <  1:177928‑M2/132‑1 (MQ=255)
                                                                                                                                    cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGa          >  1:122718‑M2/11‑143 (MQ=255)
                                                                                                                                     ccaaaccaaCGTTTATGAAAATGAACAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGCCCAGAACACTTTTCTACAACGTAATGCGCTGaa         <  2:684602‑M2/134‑1 (MQ=255)
                                                                                                                                         accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACtgt     <  2:693996‑M2/138‑1 (MQ=255)
                                                                                                                                            aaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTACTGCGCTGAACTGTGCa  >  2:444230‑M2/3‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                            
GTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA  >  NC_000913/1209477‑1209759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.