Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979268 1979278 11–776 58 [0] [1] 59 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)53 (1.310) 44/268 0.0 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

GCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTG  >  NC_000913/1979142‑1979417
                                                                                                                                         |                                                                                                                                          
tttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAg                                                                                                                                       <  2:639249‑M2/6‑1 (MQ=255)
 ttacacttatctgagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                                                                      <  1:544689‑M2/7‑1 (MQ=255)
     acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatccgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                                                                  >  2:742616‑M2/133‑143 (MQ=255)
      cttatctaagatttttcctaaatcgacgcacctgcatcggcgattgcagtcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAc                                                                                                                                 <  2:550371‑M2/12‑1 (MQ=255)
             aagatttttcctaaatcgacgcacctccactcgtcacgacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtt                                                                                                                          <  1:323620‑M2/19‑1 (MQ=255)
             aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtt                                                                                                                          >  1:538871‑M2/125‑143 (MQ=255)
             aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggagggggcctgcgagtttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtt                                                                                                                          >  1:292889‑M2/125‑143 (MQ=255)
              agatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttt                                                                                                                         <  1:726028‑M2/20‑1 (MQ=255)
              agattgtgcctaaatcgacgaaactgtgttcgtcactacacgcacatacaacgtaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttt                                                                                                                         <  2:33823‑M2/20‑1 (MQ=255)
                attttgcctaaatcgacgaaactgcattcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttttg                                                                                                                       <  2:715254‑M2/22‑1 (MQ=255)
                 tttttcctaaatcgacgcaactgtacgcgtcactacacgcacatacaacggaggggggctgcgattttaaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                      <  1:338650‑M2/23‑1 (MQ=255)
                 tttttcctaaaccgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataaggcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                      <  1:426323‑M2/23‑1 (MQ=255)
                        taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataactgTATAAGCCATACTTTTGTTTCGGGTGTAtt                                                                                                               >  1:377491‑M2/114‑143 (MQ=255)
                          aatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTc                                                                                                             >  1:665285‑M2/112‑143 (MQ=255)
                           atcgacgcaactgtactcgtcactaaacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacatacatgTATAAGTCACACTTTTGCTTTCGGTGTACTTCa                                                                                                            >  2:768748‑M2/111‑143 (MQ=255)
                             caacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                                                                                                          <  1:171201‑M2/35‑1 (MQ=255)
                               acgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacatcaatgTATAAGTCATACTTTTGTTTTGTGTGTATTTCAATCt                                                                                                        >  2:733554‑M2/107‑143 (MQ=255)
                                 gcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                                                                      >  1:380711‑M2/105‑143 (MQ=255)
                                      tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaacgTATAAGTCATACTCTTCTTTTGCATGTATCTCAATGTGTTtaaa                                                                                                 >  2:729653‑M2/100‑143 (MQ=255)
                                       gtactctgcgctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacagaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                <  1:720218‑M2/45‑1 (MQ=255)
                                       gtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                <  1:768605‑M2/45‑1 (MQ=255)
                                       ggactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                <  1:158079‑M2/45‑1 (MQ=255)
                                         actcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGt                                                                                              >  2:94099‑M2/97‑143 (MQ=255)
                                           tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaccatacatgTATAAGTCATACTTTGATGTTGTGTCGATTTCCATCTGTTAAAACGttt                                                                                            >  2:464907‑M2/95‑143 (MQ=255)
                                                 ctacacgcacatacaacggagtggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgct                                                                                      >  2:671935‑M2/89‑143 (MQ=255)
                                                       gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                                <  1:426185‑M2/61‑1 (MQ=255)
                                                         acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                                                              <  1:254093‑M2/63‑1 (MQ=255)
                                                         acatacaacggaggggggcggcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                                                              <  1:495436‑M2/63‑1 (MQ=255)
                                                                acggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGATTTGGGTGTATTTCAATCTGTTAAAAAGGTTTTCGCtacgattgcacgtcaa                                                                       >  2:81828‑M2/74‑137 (MQ=255)
                                                                   gaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                                                                    <  1:600955‑M2/73‑1 (MQ=255)
                                                                   gacgggggttgcgactttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                                                                    <  1:481740‑M2/73‑1 (MQ=255)
                                                                    aggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTCCGCTAGCAAGCAAAAATg                                                                   >  1:277368‑M2/70‑143 (MQ=255)
                                                                    aggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTCTATTTCACTCTGTTAAAAAGTTTTTAGCTCGTCTGGCAAGCAAAAATg                                                                   >  1:567825‑M2/70‑143 (MQ=255)
                                                                      gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaa                                                                 >  1:444227‑M2/68‑143 (MQ=255)
                                                                       ggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                <  2:100584‑M2/77‑1 (MQ=255)
                                                                            tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                                                            >  1:782479‑M2/62‑142 (MQ=255)
                                                                            tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                                                            <  2:782479‑M2/81‑1 (MQ=255)
                                                                               gattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaata                                                        >  1:113115‑M2/59‑143 (MQ=255)
                                                                                          atgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGGCATACTGTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATggg                                             >  1:494574‑M2/48‑143 (MQ=255)
                                                                                                  tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcg                                     >  2:699904‑M2/40‑143 (MQ=255)
                                                                                                    cagagctcataaacccctcaattactgaacatacatgTATACGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTGAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGTATGTTGCGca                                   <  2:648617‑M2/106‑1 (MQ=255)
                                                                                                      gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                 <  1:742616‑M2/108‑1 (MQ=255)
                                                                                                       atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGTTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGTAATAATCGAAATTGGATGTTGCCCACAg                                >  2:602503‑M2/35‑143 (MQ=255)
                                                                                                         cacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTTTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTc                              <  1:781438‑M2/111‑1 (MQ=255)
                                                                                                         cacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTc                              >  1:725804‑M2/33‑143 (MQ=255)
                                                                                                          atacaaaacacttaattacttagcataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGGTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCa                             <  2:470177‑M2/112‑1 (MQ=255)
                                                                                                            acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                           >  1:719802‑M2/30‑143 (MQ=255)
                                                                                                                aactctcaattgcttaacattaatgTATAAGTCATACTGTTGTTTTGGGTGTATTTCAAGCTGTTAAAAAGTTGTACGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                       <  2:454530‑M2/118‑1 (MQ=255)
                                                                                                                        attacttaacataaatgTATAAGTCATACTTTTTTTGTGGGTGTATTTCAATCTGTTAAACAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGt               <  2:326796‑M2/126‑1 (MQ=255)
                                                                                                                            cttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAACATAACTCACCGTAaat           >  1:152161‑M2/14‑143 (MQ=255)
                                                                                                                            cttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGAGCACATGCAAAATAACTCACCGTAaat           >  2:582305‑M2/14‑143 (MQ=255)
                                                                                                                             ttaacataaatgTATAAGTAATAATTTTGTTTTGTGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGTAAGTAAAAATGAAACAGGAATAATCTAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaata          <  2:65000‑M2/131‑1 (MQ=255)
                                                                                                                                acataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc       <  2:444227‑M2/134‑1 (MQ=255)
                                                                                                                                  ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat     >  1:175468‑M2/8‑143 (MQ=255)
                                                                                                                                  ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat     >  1:632345‑M2/8‑143 (MQ=255)
                                                                                                                                   tAAATGTATAAGTCATACTAGTGTTTTGGGTGTATTTGAGTATGTGAAAAAGTTTTTCGCTACGATAGCAAGCAAAAATGAAAGAGGAATAATAGAAATGGGATGTTGAGCACAGTCAAAACAACACGCCGTAAAGAataatc    >  2:702233/1‑143 (MQ=255)
                                                                                                                                    aattgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCt   <  2:110839‑M2/138‑1 (MQ=255)
                                                                                                                                     aatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTg  <  2:279886‑M2/139‑1 (MQ=255)
                                                                                                                                     aatgTATAAGTCATACTTTTGTTTTGGGCGTATGTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTg  <  2:486158‑M2/139‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                          
GCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTG  >  NC_000913/1979142‑1979417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.