New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2666016 =41 (0.960)3 (0.070) 3/276 6.4 6.8% coding (582/1281 nt) csiE stationary phase inducible protein
?NC_000913 2666038 = 43 (1.030)coding (604/1281 nt) csiE stationary phase inducible protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCT  >  NC_000913/2665900‑2666177
                                                                                                                                          |                                                                                                                                           
cggCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGACATTGGACGTCACTGGCAGCGTCGGGCGCTCCAGCCTGt                                                                                                                                         <  2:239936/141‑1 (MQ=255)
 tGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAACTTGGACGCCACTGGCCGCGTCGGGCGCTCCAGCCTGTa                                                                                                                                        >  2:261440/1‑143 (MQ=255)
 tGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTGCAGCCTGTa                                                                                                                                        >  2:354549/1‑143 (MQ=255)
  gCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTac                                                                                                                                       >  2:72400/1‑143 (MQ=255)
  gCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCGCCAGCCTGTac                                                                                                                                       >  1:20768/1‑143 (MQ=255)
   cAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCCGTccc                                                                                                                                      >  2:704249/1‑143 (MQ=255)
            ttGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCtgatga                                                                                                                             <  2:351050/143‑1 (MQ=255)
            ttGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGCCGGGCGCTCCAGCCTGTACCCCCtcacgc                                                                                                                             >  2:542396/1‑138 (MQ=255)
               ctgcAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGcc                                                                                                                          >  1:538338/1‑143 (MQ=255)
                  cagcaCCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCGCCAGCCTGTACCACCTGATGAGCCAcg                                                                                                                       >  2:179626/1‑142 (MQ=255)
                         acGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGGCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATg                                                                                                                <  2:619081/143‑1 (MQ=255)
                          cGCTGCAATTACGCCTCAGTTTAAGCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATgg                                                                                                               <  2:315418/143‑1 (MQ=255)
                           gCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGc                                                                                                              >  1:468724/1‑143 (MQ=255)
                                  gtACGCCTCACTTCAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCGCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACtt                                                                                                       <  2:232792/142‑1 (MQ=255)
                                   tACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACGGCTGATGGCaccactgt                                                                                                      >  2:493425/1‑141 (MQ=255)
                                      gCCTCAGTTTAATCTGGTCCAACGTCGCGGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACtttttt                                                                                                   <  1:10405/143‑1 (MQ=255)
                                               tAATCCGCTCCAGGGGCGCTGGGCGGAATCCTGGCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGc                                                                                          <  1:290027/143‑1 (MQ=255)
                                                actCCGCTCGACCGTCGCTCGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCg                                                                                         <  1:310730/141‑1 (MQ=255)
                                                aaTCCGCTCCAACGTCGCTGGGCGGAAGCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCg                                                                                         <  2:611418/143‑1 (MQ=255)
                                                      cTCCACCGTCCCTGGGCGGAATCCTGCCTCGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTcc                                                                                   <  1:339172/143‑1 (MQ=255)
                                                      cTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTcc                                                                                   <  1:339828/143‑1 (MQ=255)
                                                       tCCAACGTCGCTGGGCGGAATCCTGCCTTGAGTTTCAGCCAGCGCAGGGAATCGGACGCCACTGGCAGCGAACGGAGGTCCTGCCTGTACCACCGATGAGCCACTGTTCAGGGCCCTACCTTGTTCCATGCTCCggcctccag                                                                                 >  2:678371/1‑136 (MQ=255)
                                                        ccAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCACGTTGCGGGTTCCCg                                                                                 >  1:88173/1‑143 (MQ=255)
                                                         cAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCCCTGTTCATCGCACTCCTTTTCTCCATCTGGCGCCTTccata                                                                                >  1:497545/1‑140 (MQ=255)
                                                                  tGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCg                                                                       <  1:120213/143‑1 (MQ=255)
                                                                        gAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAAGTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATgc                                                                 <  1:768755/143‑1 (MQ=255)
                                                                          aTCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGCGATgcgc                                                               >  1:314016/1‑143 (MQ=255)
                                                                           tCCCGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACGGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCa                                                              <  1:709298/143‑1 (MQ=255)
                                                                              tGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGTCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCa                                                           >  2:409754/1‑143 (MQ=255)
                                                                                 cTTGCATTTCATGTAGCGCACGAAATTGGCCGCCACTGGCACCGTCGGGCGCGCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCg                                                        <  1:26503/143‑1 (MQ=255)
                                                                                  ttGAATTTCAGGTAGCGCAGGAACTTGGACGCGACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGAGGAGCCCCTGTTTATGGCACTACTTTTTTCGATGTTGCGGGTTCCCGATCCAGTGCGGGCGGCGCacgcgcag                                                       >  2:410191/1‑136 (MQ=255)
                                                                                  ttGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCgg                                                       >  1:681566/1‑143 (MQ=255)
                                                                                       ctgcaggcaggGCAGGAAATGGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgacag                                                  <  1:69206/140‑1 (MQ=255)
                                                                                             gtggcgcACGAGAGTGGACGCCACTGGCGGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAAtt                                            <  2:771056/140‑1 (MQ=255)
                                                                                                     ggAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGCTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATCGCGGGATGCGCATCAGCGGGACAGACAATAGCCTccgg                                    >  1:672103/1‑140 (MQ=255)
                                                                                                      gAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATTTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCCGCGGGACAGACAATTGCGTCAGTc                                   >  1:547823/1‑143 (MQ=255)
                                                                                                             gagcccgcTGGCAGCGCCGGGCGCTCCAGCCTGTACCCCCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCaaa                            <  2:324026/136‑1 (MQ=255)
                                                                                                              aCGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAAGTGCGTCAGTCTATCAAAc                           >  1:474598/1‑143 (MQ=255)
                                                                                                                  cACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCt                       >  1:273601/1‑143 (MQ=255)
                                                                                                                       gCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTATACATGTTGCGGGTTCCCGATACATTGCGGAATGAGCGTCAGCGGCGCAGCCAATAGCGTGAGTATATCGAACATCTgcaaa                  >  2:412424/1‑139 (MQ=255)
                                                                                                                             tCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCAtt            >  2:631243/1‑143 (MQ=255)
                                                                                                                              cGGGCGCTCCAGCCTGTCCCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCAttt           <  1:370559/143‑1 (MQ=255)
                                                                                                                                  cgcTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGAATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGt       <  2:556228/143‑1 (MQ=255)
                                                                                                                                     tCCAGCCTGTACCACCTGATGAGATGCTGTTGATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGGGGGGTGCGCATCAGCGGGACAGAAAGTTGCGTCAGGCTACCGAACTTCTGGGAAGCCGTTTGCGTGAg    >  2:278240/1‑143 (MQ=255)
                                                                                                                                       cAGCCGGTACCTCCTGATGAGCCTCTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTCCGGGTTGCGCATCAGCGGGACAGACAATTGGGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCt  <  2:178021/143‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                           
CTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCT  >  NC_000913/2665900‑2666177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.