New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3469435 =39 (0.910)3 (0.070) 3/276 6.4 7.7% coding (419/2694 nt) chiA periplasmic endochitinase
?NC_000913 3469452 = 34 (0.820)coding (402/2694 nt) chiA periplasmic endochitinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCCGTAGCGGCACGAACATAACGCCATGGGTTGCTGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTC  >  NC_000913/3469311‑3469578
                                                                                                                                             |                                                                                                                              
tgccccaGCGGCACGAACCTACCGCCATGAGTTGCTGGCATCATTGATTTTCGCATCACCCCGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCctgct                                                                                                                               <  1:224257/137‑1 (MQ=255)
          gCACGAACATAACGCCATGGGTTGCTGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCa                                                                                                                     >  1:39546/1‑143 (MQ=255)
           cACGAACATAACGCCATGGGTTGCTGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAg                                                                                                                    <  1:404458/143‑1 (MQ=255)
                     aCGCCATGGGTTGCTGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGGGGCTACCCACCAGGCGTTTTTATATGCCGCCCCGTTCAAGACGACATACCAGGGCGTCCCGCCCTGCTGTTCATTCCGGGCAACTACag                                                                                                          >  1:275857/1‑143 (MQ=255)
                       gCCATGGGTTGCTGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGAGGCTACACACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACagaa                                                                                                        >  1:613877/1‑143 (MQ=255)
                         cATGGGTTGCTGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACcgaagg                                                                                                      >  1:210443/1‑142 (MQ=255)
                              gTTGCCGGCATCACTGCTTGTCGCATCGCCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATAGACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAg                                                                                                 <  2:400750/143‑1 (MQ=255)
                               ttGCTGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCACCTACAGAAGAATTata                                                                                                >  1:379223/1‑141 (MQ=255)
                                tGCTGGCATTAGTGCGTTCCGCATCACCCGGACAGTTAGAAGAGGCCACCCACCAGGCATTTTTATATACCGCACCATTACAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGAc                                                                                               <  1:59108/143‑1 (MQ=255)
                                   tGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCCGGCAACTCCCGAAGAATTAAACTGa                                                                                            >  1:60671/1‑143 (MQ=255)
                                               ttttCGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCtgt                                                                                >  2:781595/1‑143 (MQ=255)
                                                   cGCATCTGCCGGACAGTTAGACGAGGCGACCCACCAGGCATTGTTATATACCGCACCATGAAAGACGCCATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTg                                                                            <  2:603652/143‑1 (MQ=255)
                                                   cGCATCCCCCGGACAGTCAGAAGACGCTACCCACCCGGCATTTTTATATACCGCACCCTTAAAGACGACCTACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTg                                                                            <  1:151255/143‑1 (MQ=255)
                                                   cGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTg                                                                            <  1:71598/143‑1 (MQ=255)
                                                     cATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGgt                                                                          <  1:531792/143‑1 (MQ=255)
                                                          cccGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTCGc                                                                     >  1:259277/1‑143 (MQ=255)
                                                           ccGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGcc                                                                    >  1:382268/1‑143 (MQ=255)
                                                                 aGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACGGTGCCCTGTGCTGGTGGAGACGagacg                                                              >  2:260536/1‑139 (MQ=255)
                                                                   ttAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGCACCGcc                                                            >  2:774986/1‑143 (MQ=255)
                                                                           ggCTTCCCTCCGGGCATTTTTATAGACCGCACCATTTAAGACGACATACCAGGCCTGACCGTCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGcag                                                    <  2:58247/143‑3 (MQ=255)
                                                                            gCTACCCACCAGGCATTTTCATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCgg                                                   <  1:90591/143‑1 (MQ=255)
                                                                              tACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGAGCTGGTGTATCCGAACCGCCATTAGCCGGCg                                                 <  2:475375/143‑1 (MQ=255)
                                                                                 ccaccaGGCATTTTTCTCTACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTAt                                              <  2:212522/143‑1 (MQ=255)
                                                                                                      cGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGGTGCCGGCGAactggaat                         >  2:686651/1‑143 (MQ=255)
                                                                                                       ccACCCTTATAGGCCACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTACACGGAACGTTGCCTTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTatttgaatt                        <  2:726767/142‑1 (MQ=255)
                                                                                                           cATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGTCCTGGGCCGGCGTATTGGATGCAGGCGTAtttgaatttgaa                    >  1:649871/1‑143 (MQ=255)
                                                                                                           cATTAAAGACGACATACCAGGTCGGACCGCCCTGCTGTTGATGCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTAtttgaatttgaa                    <  1:22512/143‑1 (MQ=255)
                                                                                                            aTTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGCGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGCATTTgaag                   >  1:346164/1‑143 (MQ=255)
                                                                                                             ttAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTgaaga                  >  2:102887/1‑143 (MQ=255)
                                                                                                                 aGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGAt              <  2:39546/143‑1 (MQ=255)
                                                                                                                   acgacATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGCTGCAGGCGTGTTTGACGTTGAAGAAGATGa            >  2:333641/1‑143 (MQ=255)
                                                                                                                       cATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGCATTTGAAGAAGATGAGCTg        >  2:170277/1‑143 (MQ=255)
                                                                                                                             aGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTCGAGCCAGGCGAATTGGAGTTTGAAGAAGATGAGCTGCCGctc  >  2:269609/1‑143 (MQ=255)
                                                                                                                             aGGTCTGACCGCCCTGCTGTTTATTAAAGGCAACTACAGAAGAATTAGACGGAACAGTGCACTGTGCTGGTGTAGCCGAACCGCCATTAGCCAGCGAATTGAGTGCATGCGTATTTGAATTTGAAAAATATCAGCTGCCGctc  >  2:2348/1‑143 (MQ=255)
                                                                                                                                             |                                                                                                                              
TGCCGTAGCGGCACGAACATAACGCCATGGGTTGCTGGCATCATTGCTTTTCGCATCACCCGGACAGTTAGAAGAGGCTACCCACCAGGCATTTTTATATACCGCACCATTAAAGACGACATACCAGGTCTGACCGCCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTC  >  NC_000913/3469311‑3469578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.