New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3946688	67 (1.270)	8 (0.160)	7/272	4.8	11.1%	intergenic (+81/‑12)	rrlC/rrfC	23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon
	?	NC_000913	= 4171601	NA (NA)					intergenic (+57/‑36)	rrlB/rrfB	23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAT  >  NC_000913/4171511‑4171710                                                                                            |                                                                                                              tAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAgc                                                           >  1:780426/1‑143 (MQ=32) tAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACCCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCCGTCTGATAAAACAGGATTTGCCTGGCCGCAGGAgc                                                           >  2:580516/1‑143 (MQ=11)  aaCCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGCAGCTGATTTGGCGGATGAGAGAAGATTTTCAGC‑CTGAGACAGATTAGAGTAGGACGCAGAGGCGGGCGGATAAAACGGAATTTGCCTGGCGGCAgccggg                                                          >  2:156029/1‑138 (MQ=11)    ccGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAG‑TAGGGTTTAAAGCTCTTAGGGTGATTAAATCAAAACACAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGcgcg                                                        <  1:951973/143‑1 (MQ=11)       ggaCTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAGAAAACAGAATTTGCCTGGCGGCAGTAGCGCggtg                                                     <  2:815320/141‑1 (MQ=17)           tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTcc                                                 >  1:13670/1‑143 (MQ=32)             aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGGGGTCCCa                                               >  2:597557/1‑143 (MQ=17)              agcaCCGTGAGGCTCAACCTGACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCAc                                              <  1:477707/140‑1 (MQ=12)                aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCt                                            <  1:718641/143‑1 (MQ=32)                aaCCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCt                                            >  1:525236/1‑143 (MQ=32)                     tGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGAccc                                       >  2:508114/1‑143 (MQ=32)                     tGAGGCGTCACCTTACAACGCCGCAGCTGTTTTGGCGGATGAGAGAAGGGTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGAccc                                       <  2:490202/143‑1 (MQ=11)                           ttAGCCGTACAAGGCCGAAGCTGTTGTGGCGGTGGAAAGAAGATTTTCATC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGcc                                 <  2:330293/143‑1 (MQ=11)                           ttAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCAGCTGACCCCCTggc                                 >  2:117546/1‑141 (MQ=12)                           ttAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGcc                                 >  2:687242/1‑143 (MQ=32)                                cTTACAACGCCGAAGCTGTTTTGGCGGATGCGAGAAGATTTTCAGC‑CTGCTACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCAGGCCgcgcg                            >  2:782484/1‑139 (MQ=255)                                   aCAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGCTAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAg                         <  1:676254/143‑1 (MQ=17)                                     gaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAGATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                       <  2:901239/142‑1 (MQ=17)                                     aaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                       <  1:294002/143‑1 (MQ=32)                                     aaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                       >  2:24071/1‑143 (MQ=32)                                     aaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                       <  1:833508/143‑1 (MQ=32)                                     aaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                       <  1:3400/143‑1 (MQ=32)                                     aaCGCCGAAGCTGTTTTGGCGGATGAGAGAAGACTGTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa                       <  1:739630/143‑1 (MQ=17)                                           gAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGaaa                 <  1:934243/143‑1 (MQ=32)                                           ctaGCTGTTTTGTCGGAGCAGAGATGCTTCTCTGC‑GTGATACAGACTAAATCAGAACGGAGGAGCGGTCTAATAAAAAAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGaaa                 <  2:350392/141‑1 (MQ=11)                                            aaGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAAc                >  2:844845/1‑143 (MQ=32)                                                  ttttGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTa          <  1:527039/143‑1 (MQ=32)                                                     tGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAAGCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgcg       <  2:146323/143‑1 (MQ=17)                                                      ggCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgcgc      <  2:244757/143‑1 (MQ=32)                                                         ggATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTATCGCCGa   >  2:174163/1‑143 (MQ=17)                                                          gATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAt  <  1:859876/143‑1 (MQ=31)                                                                                            |                                                                                                              TAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGC‑CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAT  >  NC_000913/4171511‑4171710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.