Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979268 1979278 11–776 62 [0] [0] 61 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)59 (1.180) 52/268 0.0 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATC  >  NC_000913/1979137‑1979415
                                                                                                                                              |                                                                                                                                        
gggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtccctacacgcacatacaccggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattccttaacataaatgt                                                                                                                                          >  1:378961‑M2/143‑143 (MQ=255)
 ggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgta                                                                                                                                         >  1:191673‑M2/142‑143 (MQ=255)
    ctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtaactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                      >  1:341581‑M2/139‑143 (MQ=255)
     tttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggctggaagcgattatcaataatgcgcgacgcagagcacacaaagcactcaattacttaacataaatgTAtaat                                                                                                                                     >  2:287661‑M2/138‑142 (MQ=255)
          acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                                                                >  1:607648‑M2/133‑143 (MQ=255)
          acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                                                                <  1:742073‑M2/11‑1 (MQ=255)
          acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacataaaacggaggggggctgcgattttcagtaatgcgtgctgcagatcacacaaaacactcaattacttaacataaatcTATAAGTCatg                                                                                                                                >  1:522958‑M2/133‑142 (MQ=255)
          acttatctaagacttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggagcggggtcgccattgtcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                                                                <  1:134875‑M2/11‑1 (MQ=255)
               tctaagatttttcctaaatcgacgcaatgttactcgtcgcaacactcagatacaacggaggggggctgcgttgttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtttt                                                                                                                           <  1:437062‑M2/16‑1 (MQ=255)
                ctaagacttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                                                          <  2:263414‑M2/17‑1 (MQ=255)
                 taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt                                                                                                                         >  1:882047‑M2/126‑143 (MQ=255)
                      tttttcctacatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacccaacacccacacacttaacatatctgTATAAGTCATACTTTTGTTTTgg                                                                                                                    <  1:957045‑M2/23‑1 (MQ=255)
                      ttgttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataaggcgtgatgcagttttgttaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                    <  2:203329‑M2/23‑1 (MQ=255)
                      ttgtacgtaaagcgacgcaactgtactcgtcactacacgcccatacaacggaggggcgcttctattctcaatactgcgtgatgcagatcacacaaaacactcaattacgtaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                    <  2:827873‑M2/23‑1 (MQ=255)
                        tttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaagactcaattatttaacataaatgTATGAGTCATACTTTTGTTATGGgt                                                                                                                  >  1:902918‑M2/119‑143 (MQ=255)
                              aaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                                                            <  2:234901‑M2/31‑1 (MQ=255)
                                atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCa                                                                                                          >  1:826461‑M2/111‑143 (MQ=255)
                                    acgcagctgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCt                                                                                                      <  2:948439‑M2/37‑1 (MQ=255)
                                    acgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTACAAGCCATACTTTTGTTTCGGGTGTATTCCActct                                                                                                      >  2:611656‑M2/107‑143 (MQ=255)
                                      gcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                                                                    <  1:796354‑M2/39‑1 (MQ=255)
                                        aactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATACGTCATACTTTTGGTTTGGGTGTGTGTCAATATGTTa                                                                                                  >  1:873204‑M2/103‑143 (MQ=255)
                                            gtactcgtcactacacgcccatccaacggagtggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                              <  2:752933‑M2/45‑1 (MQ=255)
                                                tcgtcactacacgcacatacaacggaggggggctgcgcttttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTCTCGGGTGTATTTCAATCTGTTCAGAAGttt                                                                                          >  1:864474‑M2/95‑143 (MQ=255)
                                                tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                          <  1:91312‑M2/49‑1 (MQ=255)
                                                   tcactacacgcacatacaacggaggggggctgcgatttgcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                                                                                       <  1:160508‑M2/52‑1 (MQ=255)
                                                     actacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc                                                                                     >  1:852041‑M2/90‑143 (MQ=255)
                                                          acgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgc                                                                                >  1:17161‑M2/85‑143 (MQ=255)
                                                             cacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTATTCGCTACGCTag                                                                             >  2:851122‑M2/82‑143 (MQ=255)
                                                              acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                                                            >  2:943594‑M2/81‑143 (MQ=255)
                                                                atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                                                          <  2:544325‑M2/65‑1 (MQ=255)
                                                                atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                                                          >  1:357095‑M2/79‑143 (MQ=255)
                                                                       ggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGATCTGGGTGACTTTTAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                   >  2:877581‑M2/72‑143 (MQ=255)
                                                                             ggtctgcgattttcaataatgcgggatgcagaccacacaaaacactctattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc                                                             <  2:535547‑M2/78‑1 (MQ=255)
                                                                                 tgcgattttcaataatgcgtgatgcagatcacagaaaacattcaattacttaacagaaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                                                         <  2:67064‑M2/82‑1 (MQ=255)
                                                                                 tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                                                         >  1:670002‑M2/62‑143 (MQ=255)
                                                                                 tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                                                         >  1:669960‑M2/62‑143 (MQ=255)
                                                                                 tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                                                         >  1:664654‑M2/62‑143 (MQ=255)
                                                                                          caataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaa                                                >  2:374809‑M2/53‑143 (MQ=255)
                                                                                           aataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGaaa                                               >  1:382855‑M2/52‑143 (MQ=255)
                                                                                             caatgcttgatgcacatcacacaaaacacgcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTCTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATg                                             <  1:255637‑M2/94‑1 (MQ=255)
                                                                                                tgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa                                          <  1:955939‑M2/97‑1 (MQ=255)
                                                                                                      atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgc                                    >  1:429009‑M2/41‑143 (MQ=255)
                                                                                                       tgcagatcacacaaaacactcaattactgaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATATTgcg                                   >  2:836089‑M2/40‑143 (MQ=255)
                                                                                                         cagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTCGTTTTGGATGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAATCAAAAATGAAACAGCAATAATCGACATCGGATGTCTCGca                                 >  2:817267‑M2/38‑143 (MQ=255)
                                                                                                           gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                               <  1:496178‑M2/108‑1 (MQ=255)
                                                                                                           gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                               >  1:248438‑M2/36‑143 (MQ=255)
                                                                                                            atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAg                              <  1:103280‑M2/109‑1 (MQ=255)
                                                                                                              cacacaaaacgctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTGCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTc                            <  2:629574‑M2/111‑1 (MQ=255)
                                                                                                                 acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                         >  2:689355‑M2/30‑143 (MQ=255)
                                                                                                                 acaaaacactcaattacttaacataaatgTATAAGTCATACTTTCGATTTGGGTGTATTTCCATCTGTTAAACAGTTTTTAGCTACGCTAGCAATCAAAAATGAAACAGGAATCATAGAAATGGCAAGCTACGAACAGACaaa                         >  2:175368‑M2/30‑143 (MQ=255)
                                                                                                                   aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTAGCGTGCTGTCAAAAt                       >  1:846476‑M2/28‑143 (MQ=255)
                                                                                                                   aaaacacgcaattagttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAGACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAt                       <  2:188435‑M2/116‑1 (MQ=255)
                                                                                                                      acactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAAc                    <  1:75063‑M2/119‑1 (MQ=255)
                                                                                                                         ctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa                 <  1:562736‑M2/122‑1 (MQ=255)
                                                                                                                           caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTACACAAAACGAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAcc               <  2:882047‑M2/124‑1 (MQ=255)
                                                                                                                               tacttaacataaaaaTAAAGGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaa           <  1:252715‑M2/128‑1 (MQ=255)
                                                                                                                                 cttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAACAAGCAAAAATGAAACCGGGTTTTTCAAAATTGTATGTTGCGCACAGTCAAAATAACTCACCGTAaat         >  1:436808‑M2/14‑143 (MQ=255)
                                                                                                                                  ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaata        >  2:164321‑M2/13‑143 (MQ=255)
                                                                                                                                     acataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc     <  1:605163‑M2/134‑1 (MQ=255)
                                                                                                                                       ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAGATGAAACAGGAATAATGGAAGTGGGATGTTGCGCACAGTCAAAATAACTCACCGTAGATAatcat   >  1:744371‑M2/8‑143 (MQ=255)
                                                                                                                                        caaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcatc  <  1:300441‑M2/137‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                        
GTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATC  >  NC_000913/1979137‑1979415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: