BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC JC	NC_000913	2,771,956	IS2 (–) +5 bp	7.6%	intergenic (+341/+42)	yfjT → / ← yfjU	CP4‑57 prophage; putative periplasmic protein/CP4‑57 prophage; conserved protein;Phage or Prophage Related

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2771956 =	55 (0.520)	6 (0.050)	6/438	NT	9.6%	intergenic (+341/+46)	yfjT/yfjU	CP4‑57 prophage; putative periplasmic protein/CP4‑57 prophage; conserved protein;Phage or Prophage Related
*	?	NC_000913	= 2997691	NA (NA)	6 (0.050)	6/438	NT	9.6%	noncoding (1/1331 nt)	IS2	repeat region
*	?	NC_000913	= 2771960	55 (0.520)	3 (0.030)	3/436	NT	5.1%	intergenic (+345/+42)	yfjT/yfjU	CP4‑57 prophage; putative periplasmic protein/CP4‑57 prophage; conserved protein;Phage or Prophage Related
*	?	NC_000913	2996361 =	NA (NA)	3 (0.030)	3/436	NT	5.1%	noncoding (1331/1331 nt)	IS2	repeat region

GTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGC  >  NC_000913/2771733‑2772197

tctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccgggtcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTCAGGTGACATTGCt                                                                                                                                                                                                                                     >  2:1074101‑M1/224‑238 (MQ=255)

     tttCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGAGCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGa                                                                                                                                                                                                                               <  1:1014155/239‑1 (MQ=255)

         aGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATAAGGtggatttgcccctatattt                                                                                                                                                                                                                            >  2:1038083‑M1/1‑219 (MQ=255)

                                          gCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAAt                                                                                                                                                                                          <  2:865936/239‑1 (MQ=255)

                                            tgtgAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcc                                                                                                                                                                                         <  1:332268‑M1/238‑55 (MQ=255)

                                              tgAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGACACTGAAGATATCTGAACTAAGt                                                                                                                                                                                      >  1:1184424/1‑239 (MQ=255)

                                                   ttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTCAGGTGACATTGCTCCCTGTTGCAATAGATGATTTTGTCACTGAAGATATCTGAAATAagtttga                                                                                                                                                                                  <  2:641646‑M1/66‑3 (MQ=255)

                                                          gtgtTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGGATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTtca                                                                                                                                                                          >  2:855865/1‑239 (MQ=255)

                                                              tAAAACTCCTGATCACTTTTTTGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCAc                                                                                                                                                                      <  2:664293/239‑1 (MQ=255)

                                                                    tCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcg                                                                                                                                                                <  1:1038083‑M1/239‑80 (MQ=255)

                                                                     ccTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAACATTAAAAAGATATAAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCCGTTCATCACGGGTCgg                                                                                                                                                               >  2:325665/1‑239 (MQ=255)

                                                                                tttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCga                                                                                                                                                    >  2:238181‑M1/144‑239 (MQ=255)

                                                                                tttGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTtcatca                                                                                                                                                                       <  1:772810/220‑1 (MQ=255)

                                                                                tttGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTtcatca                                                                                                                                                                       >  2:772810/1‑220 (MQ=255)

                                                                                tttGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCga                                                                                                                                                    >  1:887423/1‑239 (MQ=255)

                                                                                               ggTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTg                                                                                                                                     >  2:29785/1‑239 (MQ=255)

                                                                                                                     ttGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATg                                                                                                               >  1:755185/1‑239 (MQ=255)

                                                                                                                                 tGAGCCTGACTAACTTAACAAGTAAAATTAAAAAGATATGAATGAATACGGTGGATAACAACATGGTCAAGCACAATCAAGGACAAGGAAGGCATCAGGTGACATTGCTCCCTGATGGAAGCGATGATATTGTAACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATATCCAg                                                                                                   <  2:1005879/239‑1 (MQ=255)

                                                                                                                                 tGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCa                                                                                                    >  1:1014255/1‑238 (MQ=255)

                                                                                                                                       ggACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGtt                                                                                             >  1:992992/1‑239 (MQ=255)

                                                                                                                                        gACTAACTTTATCATTAAAATTAAAAAGATATGAATGAATACTGCGGGTATCAACATGGCCAATCACATTCAAAGACAAGACAGGCATCAGGTGACATTGCCCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGACATCAGTTTAATCAGTTCATCACGCGTCGGTGGCATATGGAGATAATTAATTCTTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGAGCGtt                                                                                             >  2:106858/1‑238 (MQ=255)

                                                                                                                                        caCTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATTTCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAACTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCCTTGCCGTTGTTATGAAGCATCTCCACCGTGtt                                                                                             >  2:694395/2‑238 (MQ=255)

                                                                                                                                         aCTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGCCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGtt                                                                                             >  2:195315/1‑237 (MQ=255)

                                                                                                                                          tccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTATTTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCg                                                                                          <  2:1077368‑M1/154‑1 (MQ=255)

                                                                                                                                                   tCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCg                                                                                                                                  >  2:43092/1‑190 (MQ=255)

                                                                                                                                                   tCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCg                                                                                                                                  <  1:43092/190‑1 (MQ=255)

                                                                                                                                                                     tataAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATa                                                               <  1:325665/239‑1 (MQ=255)

                                                                                                                                                                     tatGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATa                                                               <  1:1151184/239‑1 (MQ=255)

                                                                                                                                                                      atgaatgaATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATa                                                               >  2:393562/1‑238 (MQ=255)

                                                                                                                                                                      atgaatgaATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATa                                                               <  1:393562/238‑1 (MQ=255)

                                                                                                                                                                             aatACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTaa                                                       >  1:1168747/1‑239 (MQ=255)

                                                                                                                                                                              atACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATa                                                               >  1:246359/1‑230 (MQ=255)

                                                                                                                                                                              atACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATa                                                               <  2:246359/230‑1 (MQ=255)

                                                                                                                                                                              atACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAAt                                                      >  1:74851/1‑239 (MQ=255)

                                                                                                                                                                               tACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATg                                                     >  1:833474/1‑239 (MQ=255)

                                                                                                                                                                                   gCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCg                                                                                                                                                                <  2:384816/128‑1 (MQ=255)

                                                                                                                                                                                   gCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCg                                                                                                                                                                >  1:384816/1‑128 (MQ=255)

                                                                                                                                                                                   gCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGt                                                                                                                            <  1:1077243/164‑1 (MQ=255)

                                                                                                                                                                                   gCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGt                                                                                                                            >  2:1077243/1‑164 (MQ=255)

                                                                                                                                                                                   aaggATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGtt                                                   <  1:616938/235‑1 (MQ=255)

                                                                                                                                                                                    cGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCg                                                                                          <  1:82341/197‑1 (MQ=255)

                                                                                                                                                                                    cGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCg                                                                                          >  2:82341/1‑197 (MQ=255)

                                                                                                                                                                                    cGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATg                                                     <  1:11666/234‑1 (MQ=255)

                                                                                                                                                                                    cGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATg                                                     >  2:11666/1‑234 (MQ=255)

                                                                                                                                                                                         atCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTTAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCata                                            >  1:1172718/1‑238 (MQ=255)

                                                                                                                                                                                         atCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCatat                                           <  1:29785/239‑1 (MQ=255)

                                                                                                                                                                                              cATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCa                                                                                                                                                                                                           <  2:54007/74‑1 (MQ=255)

                                                                                                                                                                                              cATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCa                                                                                                                                                                                                           >  1:54007/1‑74 (MQ=255)

                                                                                                                                                                                              cATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTa                                      >  1:1141322/1‑239 (MQ=255)

                                                                                                                                                                                                 ggCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGGGGTGCCCCAGGCCGGGTTGTGATAGCTGGTAATGTTGCTCATATCAgctgta                                   >  2:616938/1‑234 (MQ=255)

                                                                                                                                                                                                 ggCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCt                                   >  1:726859/1‑239 (MQ=255)

                                                                                                                                                                                                      tctggagattcagggggccagtctaTCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGATATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGa                                                             <  2:709895‑M1/183‑1 (MQ=255)

                                                                                                                                                                                                      tctggagattcagggggccagtctaTCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGa                                                             >  1:709895‑M1/26‑208 (MQ=255)

                                                                                                                                                                                                      aTCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATg                                                     <  1:805471/216‑1 (MQ=255)

                                                                                                                                                                                                      aTCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATg                                                     >  2:805471/1‑216 (MQ=255)

                                                                                                                                                                                                      aTCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGAAGCACTCGATGAGTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGTTGACAGAGGCCGGGGTGTGATGAATGGTAAGGTTGCTCATATCATTATCTATTTa                              >  1:589176/1‑239 (MQ=255)

                                                                                                                                                                                                        cacaTTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACa                            <  2:74851/239‑1 (MQ=255)

                                                                                                                                                                                                            ttCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGt                        >  2:780905/1‑239 (MQ=255)

                                                                                                                                                                                                            ttCAAGGACAAGGCAGGCATCAGGTGACAGTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTACTTATTGTCGGTTCGTTGCCGGTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGGTCCGTCGGCCGGGGTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTCCaacgg                        >  2:684836/1‑236 (MQ=255)

                                                                                                                                                                                                             tCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGTTGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTg                       >  2:1068272/1‑239 (MQ=255)

                                                                                                                                                                                                                    aaaGGCAGGAATCAGGTTACATTGCTCCCTGATGCTCTCGATGATTTTGTCACTGAAGATCTCTGAAATAAGTTTAAGCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTTGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCAGAGGCCGGGTTGTGATAGATGGTATTGTTGCTCATATCAGTATCTATTTACAAAGAGACagaga                <  2:755185/238‑1 (MQ=255)

                                                                                                                                                                                                                       ggcaggcaTCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAgcc             >  1:669772/1‑239 (MQ=255)

                                                                                                                                                                                                                       ggcaggcaTCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAgcc             >  1:669801/1‑239 (MQ=255)

                                                                                                                                                                                                                       ggcaggcaTCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAgcc             >  1:1095494/1‑239 (MQ=255)

                                                                                                                                                                                                                                  ggtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctcc  >  2:804704‑M1/1‑2 (MQ=255)

                                                                                                                                                                                                                                  ggtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctcc  >  2:705555‑M1/1‑2 (MQ=255)

                                                                                                                                                                                                                                  ggtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctcc  >  2:652261‑M1/1‑2 (MQ=255)

                                                                                                                                                                                                                                  ggtggacttgcccctatctttccagacatcttttatcacttaacccattacaagcccgctgccgcagatattaccgtggcgagcgataacccagcgcactatgcggacgccattcgttataatgctcgaacgcctctgcaacgttttttgctcccgttaacccctctcgtttctgcatgatactgctgtagtcaccatttatcgttttcacgaagctctctgctattccgttcttttcc  >  2:401260‑M1/1‑2 (MQ=255)

GTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAATCACATTCAAGGACAAGGCAGGCATCAGGTGACATTGCTCCCTGATGCACTCGATGATTTTGTCACTGAAGATATCTGAAATAAGTTTAATCAGTTCATCACGGGTCGGTGGCATATCGAGATAATTAATTATTGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGC  >  NC_000913/2771733‑2772197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.