mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4400699 = | 279 (1.110) | 4 (0.020) | 4/428 | NT | 1.5% | coding (28/1281 nt) | hflX | GTPase, stimulated by 50S subunit binding; Mn(2+) homeostasis regulator |
| ? | NC_000913 | 4401206 = | 251 (1.030) | coding (535/1281 nt) | hflX | GTPase, stimulated by 50S subunit binding; Mn(2+) homeostasis regulator | |||||
| * | ? | NC_000913 | = 4297292 | 339 (1.350) | 4 (0.020) | 4/424 | NT | 1.3% | coding (2075/2148 nt) | fdhF | formate dehydrogenase‑H, selenopolypeptide subunit |
| ? | NC_000913 | = 4297565 | 276 (1.140) | coding (1802/2148 nt) | fdhF | formate dehydrogenase‑H, selenopolypeptide subunit | |||||
| * | ? | NC_000913 | = 4245107 | 292 (1.170) | 4 (0.020) | 4/420 | NT | 1.4% | noncoding (16/126 nt) | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 4245113 | 285 (1.190) | noncoding (22/126 nt) | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | 4148374 = | 345 (1.380) | 11 (0.040) | 11/440 | NT | 3.1% | intergenic (‑57/+158) | yijO/eptC | AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase |
| ? | NC_000913 | = 4503515 | NA (NA) | noncoding (1/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | 3868320 = | 228 (0.910) | 6 (0.020) | 5/426 | NT | 2.8% | coding (990/1248 nt) | yidR | DUF3748 family protein |
| ? | NC_000913 | 3868341 = | 202 (0.830) | coding (969/1248 nt) | yidR | DUF3748 family protein | |||||
| * | ? | NC_000913 | = 3856271 | 320 (1.280) | 5 (0.020) | 5/424 | NT | 1.6% | coding (37/348 nt) | yidH | DUF202 family inner membrane protein |
| ? | NC_000913 | = 3856280 | 321 (1.330) | coding (28/348 nt) | yidH | DUF202 family inner membrane protein | |||||
| * | ? | NC_000913 | 3822564 = | 305 (1.220) | 4 (0.020) | 3/426 | NT | 1.2% | coding (165/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| ? | NC_000913 | 3823238 = | 343 (1.410) | coding (839/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase | |||||
| * | ? | NC_000913 | 3763860 = | 40 (0.160) | 4 (0.020) | 3/418 | NT | 3.5% | coding (1678/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3764000 = | 182 (0.770) | coding (1818/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3758385 | 327 (1.350) | 15 (0.060) +CTG |
4/418 | NT | 4.3% | coding (1477/1845 nt) | selB | selenocysteinyl‑tRNA‑specific translation factor |
| ? | NC_000913 | 3758386 = | 333 (1.330) | coding (1476/1845 nt) | selB | selenocysteinyl‑tRNA‑specific translation factor | |||||
| * | ? | NC_000913 | 3620998 = | 159 (0.630) | 4 (0.020) | 3/418 | NT | 4.0% | coding (1807/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3763871 = | 40 (0.170) | coding (1689/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||