New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1436228	58 (0.870)	3 (0.050)	3/268	9.9	5.2%	coding (666/1134 nt)	ompN	outer membrane pore protein N, non‑specific
	?	NC_000913	= 1436244	55 (0.880)					coding (650/1134 nt)	ompN	outer membrane pore protein N, non‑specific
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCCAAACGGGGTCATATTACGCGTTTCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTCGTTGT  >  NC_000913/1436089‑1436370                                                                                                                                             |                                                                                                                                               cGCCAAACGGGGTCATATTACGCGTTTCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCa                                                                                                                                             <  1:79172/143‑1 (MQ=255)   ccAAACGGGGTCATATTACGCGTTTCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCaga                                                                                                                                           >  1:1085500/1‑143 (MQ=255)      aaCGGGGTCATATTACGCGTTTCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCagaaga                                                                                                                                        <  1:492152/143‑1 (MQ=255)       aCGGGGTCATATTACGCGTTTCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAagag                                                                                                                                       >  1:484155/1‑143 (MQ=255)       aCGGGGTCATATTACGCGTTTCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGGTCACCTTGTCATTGGTGCGGGAAGAagag                                                                                                                                       >  1:793425/1‑143 (MQ=255)         ggggTCATATTACGCGTTTCTCAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGgt                                                                                                                                     <  2:928066/143‑1 (MQ=255)           ggTCATATTACGCGTTTCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTAGTGCGGTCAGCAGAGgtgt                                                                                                                                   >  1:345945/1‑143 (MQ=255)             tCATATTACGCGTTTCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAATACACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTAt                                                                                                                                 >  1:728547/1‑143 (MQ=255)                    aCGCGTTTCTGATCACATGGTTGCCAGGTAAATATTGTTAGCGTCGTCTTTTAGCCCAGCAGTCCACGCGTCGGCTTTATCACCACCCGCCGCAGT‑ATGGTTATGAACCCGATCGGTGCGGTCAGAAGAGGTGTATGCCGCAc                                                                                                                          <  2:663219/143‑1 (MQ=255)                        gTTTCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGACTGCTTTATCACCACCCGCCACACG‑ACCGTTAACTTAGTCATTGATGTGTGCAGAAGAGGTGTATGACGCAcaaag                                                                                                                      >  2:414598/1‑139 (MQ=255)                          ttCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGCGGTGTATGCCGCACCAgcgc                                                                                                                    >  1:259678/1‑143 (MQ=255)                          gtCTGACTGCATGGTTGCCAGGTAAATATTGTTGGCATCGTATTTTAGCCCAGGAGTCCACGCGTCTGCTTTATCACCAGCCGCCGCGGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAgcgc                                                                                                                    <  2:1005563/142‑1 (MQ=255)                              gAATACATTGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCCCCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTaaa                                                                                                                <  2:541302/143‑1 (MQ=255)                                    aTGGTTGCCAGGTAAGTTTTGGTAGCTTCGTATTGTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCGCCCGCCGCAGT‑ATGGTTAACCTGGTCATTTGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCAt                                                                                                          <  2:1007810/143‑1 (MQ=255)                                    aTGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCAt                                                                                                          >  1:1063090/1‑143 (MQ=255)                                               gTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTCAAGCCCCTGCCTAcatcat                                                                                               >  1:1918/1‑143 (MQ=255)                                               gTAAAGAGTGTTAGCATCGTATTGTAGCCCAGCAGTCCTCGCTTCAGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCat                                                                                               <  1:676130/143‑1 (MQ=255)                                               ctAAATATCGCCAGCACCGCATGTTAGCCCAGCAGTCCACGCGCCTGCTTTACCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCat                                                                                               <  1:42178/142‑1 (MQ=255)                                                tAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCata                                                                                              >  1:425143/1‑143 (MQ=255)                                                       tGTTGGCACCGTATTTTAGCCCAGCGGTCCACGCGTCTGCTTTTTCACCGCCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTtgtg                                                                                       <  2:683145/143‑1 (MQ=255)                                                         ttAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTCAAGCCCATGCCTAAATCGTCTGTTGTGGa                                                                                     >  2:706695/1‑143 (MQ=255)                                                         tgtccATCGTCTCTCAGCCCATCACTCCTCGCGTCTGCTTTAAC‑CCACGTTCGCCAATGACGGCTAACCTGACCATTCGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGa                                                                                     <  2:533395/139‑1 (MQ=255)                                                           aGCATCGTATTTTAGCCCAGCAGCCCTCGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGaaa                                                                                   <  2:130970/143‑1 (MQ=255)                                                            gCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAg                                                                                  >  1:30635/1‑143 (MQ=255)                                                            gCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGATGTGGAAAg                                                                                  >  1:475977/1‑143 (MQ=255)                                                                         gCCCAGCCGTCCACGCGTCGGCTTTATCGCGACCCGCCGAAGT‑ATGGTTAACCTGGACATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCCTGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCa                                                                     <  2:93230/143‑1 (MQ=255)                                                                          ctcagcagTCCACGCGTCTGCTTTATCACCACGCGCCGCAGT‑ATGTTTAACCTGCTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTCAATCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCAc                                                                    <  2:457216/141‑1 (MQ=255)                                                                             agcagTCCCCGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGt                                                                 <  1:934557/143‑1 (MQ=255)                                                                             agcagTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGGCCCCAGCCGTCGCCGt                                                                 >  1:392768/1‑143 (MQ=255)                                                                              gcagCCCCCGCCTCTGCTTTATCCCCACCCGCCGCATT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTACATCATATGTTGTGGAAAGACCCCAGCCGTCACCGtt                                                                <  1:776379/143‑1 (MQ=255)                                                                                   ccACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCAt                                                           <  1:1059124/143‑1 (MQ=255)                                                                                    gaCGCGTCTGCATTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATg                                                          <  2:1062020/142‑1 (MQ=255)                                                                                         gTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAGCCTGGTCATTGGTGCGGTCAGAAGAGATGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATTGCGaa                                                     <  2:998305/143‑1 (MQ=255)                                                                                               tttATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGAACCCAGCCGTCACCGTTTACATGGCGAAGAtacc                                               >  2:120749/1‑140 (MQ=255)                                                                                               ttgaTCACCTCCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCAc                                               <  1:754036/140‑1 (MQ=255)                                                                                                 tATCACCACCCGCCGCAGT‑ATGGTCAACCTGGTCATGTGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCActt                                             <  2:431280/143‑3 (MQ=255)                                                                                                   tcatcaCCTTCCGCAGT‑AAGGTTAACCCGGTCATTGGTGCGGGCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTcc                                           <  1:1063164/143‑1 (MQ=255)                                                                                                      ccaccCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGGTGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCCGCCGTCACCGTTTTCATGGCGAACATCCCGTCCgtt                                        >  1:826224/1‑143 (MQ=255)                                                                                                         gccgccgCAGT‑ATGGGTAACCTGGTCATTGGTGCGGTCAGAAGGGGTGTATGCCGCACCAGCGCTAAAGCCCATGTCTCTCTCCTATCTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCgttgtt                                     <  1:819810/142‑1 (MQ=255)                                                                                                         cccGTCGCATT‑ATGGTTAACCTGGTCAATGGTGCGGTCAGAAGAGGTGTATGCCGAACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCgttgtt                                     <  1:296808/143‑1 (MQ=255)                                                                                                         cccGCGGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGGCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCgttgtt                                     <  2:1137382/143‑1 (MQ=255)                                                                                                         cccGACGCAGG‑TTGCTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCgttgtt                                     <  2:772489/143‑1 (MQ=255)                                                                                                          ccgccgCGGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGttgttg                                    <  2:1000703/143‑1 (MQ=255)                                                                                                          ccgccgCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGttgttg                                    >  1:616085/1‑143 (MQ=255)                                                                                                          ccgccgCAGT‑ATGCTGACCCTGGGCAGTGGTGCGGTCAGAAGGGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGttgttg                                    <  2:281439/143‑1 (MQ=255)                                                                                                            gccgcAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGCTTTCATGGCGAACATAACGTCCGTCGTCggg                                  >  2:518014/1‑142 (MQ=255)                                                                                                                   t‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTCGCTGGTTCCGTcc                           >  1:438481/1‑143 (MQ=255)                                                                                                                       ggTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTGGTTGGTGCCTTCCTGa                        >  1:30909/1‑143 (MQ=255)                                                                                                                       ggTTAACCTGGTCAGTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACATCCGTTGTTGGTGCCTTCCTGa                        <  1:1153489/143‑1 (MQ=255)                                                                                                                        gTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGAc                       <  1:575854/143‑1 (MQ=255)                                                                                                                                  tCATTGGGGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGc             <  1:555935/143‑1 (MQ=255)                                                                                                                                     ttGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGCCTcc          >  1:1122836/1‑143 (MQ=255)                                                                                                                                        gggCGGTCAGAAGAGGTGTATGACGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCTTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTc       <  1:379237/141‑1 (MQ=255)                                                                                                                                           cGGTCAGAGGGGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTCgtt    <  2:917435/143‑1 (MQ=255)                                                                                                                                           cGGTCAGAAGAGGTGTATGCCGCACAAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTCgtt    <  2:1017863/143‑1 (MQ=255)                                                                                                                                           cGGGCAGAAGGGGTGTATGGCCCACCGGTGTTGTATCTCATGCCCAAATCATATGTTGTGTAAAGTCCCCCGCCGTCATCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTCgtt    <  2:719762/143‑1 (MQ=255)                                                                                                                                             gTCAGGAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTCACCATTACTGGCGCcgtcgtcgt  >  2:996735/1‑143 (MQ=255)                                                                                                                                             gTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACACGACGTCGGTTGTTGGTGCCTTCCGGACGATTTCTGGCTCCTCTgttgg  >  1:965556/1‑142 (MQ=255)                                                                                                                                             |                                                                                                                                               CGCCAAACGGGGTCATATTACGCGTTTCTGAATACATGGTTGCCAGGTAAATATTGTTAGCATCGTATTTTAGCCCAGCAGTCCACGCGTCTGCTTTATCACCACCCGCCGCAGT‑ATGGTTAACCTGGTCATTGGTGCGGTCAGAAGAGGTGTATGCCGCACCAGCGCTAAAGCCCATGCCTAAATCATATGTTGTGGAAAGACCCCAGCCGTCACCGTTTTCATGGCGAACATCACGTCCGTTGTTGGTGCCTTCCTGACCATTACTGGCTCCTTCGTTGT  >  NC_000913/1436089‑1436370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.