| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3643087 = | 48 (0.720) | 3 (0.050) | 3/268 | 9.9 | 6.0% | coding (46/753 nt) | rsmJ | 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| ? | NC_000913 | 3643107 = | 48 (0.770) | coding (26/753 nt) | rsmJ | 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTC > NC_000913/3642945‑3643226 | gCTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATaa < 1:785489/143‑1 (MQ=255) cTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAg < 2:32710/143‑1 (MQ=255) tCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAgg > 1:590172/1‑143 (MQ=255) aagcaacaaAGATGCCGCCAAGTTTTGGCTCATCACGCATGCGCAATTCCAGATGTTACGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATAGTGCTCCAGCCCACAGCGAGCCCCCAGAACAGATAAGGCACCGTCTcca > 2:460446/4‑142 (MQ=255) cgccAAGTTTTGTGTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTtcatca < 2:53364/143‑1 (MQ=255) ttttGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCCGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTGTCATCGATTAAGc > 1:186342/1‑143 (MQ=255) ttttGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGc > 1:915484/1‑143 (MQ=255) tttGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCa < 2:264669/143‑1 (MQ=255) tttGGCGCATCACGCGTGCGCAATTCCAGATGTTCCGGCGGTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCa < 2:587361/143‑1 (MQ=255) gCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGAtt > 2:798304/1‑143 (MQ=255) atcaCGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTGATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCa < 2:1107086/143‑1 (MQ=255) ttGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGCCCGTCATAGTCTGTGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATg > 1:874735/1‑143 (MQ=255) ttGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATg > 1:681074/1‑143 (MQ=255) ttGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATg > 1:677353/1‑143 (MQ=255) gcAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCa > 2:1063365/1‑143 (MQ=255) cAATTCCAGATGTTCCGGCGTTAACACCAGCCCCATTACCAAAGAATCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGGTTCATCCATTAAGCAGAGTTTCACGCAATGATcgg > 2:258601/1‑141 (MQ=255) ttgcAGATGTGCCGGCGTTAACACCTGCGCCATCAGGGTGTCGTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGccc < 1:704678/140‑1 (MQ=255) aGATGTTCCGGCGTTAACACCAGCGCCATCCGGTTGTCTTCATCGTGCTCCAGCCCCCAGCCGGCCGCCAGAACAGATCAGGCACCGTCTCCGGTGCCCGTTTCATCAATTAAGCAGATATTCACTGACTCATCAGCCCTTac > 2:55567/1‑142 (MQ=255) aGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACCGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCCTCCCTTac > 1:964581/1‑142 (MQ=255) aTGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATg < 1:386083/143‑1 (MQ=255) ggCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCCCCAGAACAGATAACCGACCCTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCCCTGACTGATCAGCCCTTAATGCCGTAAt > 2:424457/1‑143 (MQ=255) gCGTTAACCCCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCCTCAATTCAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATg < 1:825163/143‑1 (MQ=255) aaCACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCa < 1:102589/143‑1 (MQ=255) acCAGCGCCATCAGGGTGTCTTAATCGTGCTCCAGCCCCCGGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAgca < 2:426981/143‑1 (MQ=255) ccAGCGCCATCAGGTTGTCTTCATCGTGCGCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAgcat < 1:831298/143‑1 (MQ=255) ccATCAGGTTGTCGTCATCGAGCTCCAGCCCCCAGCGAGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCGGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAACGCTCCAgcatcgcatc < 2:115071/143‑1 (MQ=255) tCAGGTTGTCTTCATGGTGCTCCAGCCCCCAGCGGGCCGTCAGAACAGATAATGCACCGTCTCCGGTGCCTGTGTCATCTATTCACCCGATTTTCACTGCATGCTCAGCCCTTAATGCCGTAATTCTCCAGCATCGCATCCAg < 2:545638/143‑1 (MQ=255) gTTGTCTTCACCGTGCTCCCGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCAGCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGc < 1:1106222/143‑1 (MQ=255) ttCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCa > 2:727592/1‑143 (MQ=255) ttCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCa < 2:405962/143‑1 (MQ=255) ttCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACGGAATGATCAGCCCTTAATGCCGTCATGCTCCGGCAGCGCGTCCAGATGCGGtgcg > 1:442233/1‑140 (MQ=255) tCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCAGCGCTTCACGAc > 2:348057/1‑143 (MQ=255) ccAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGaa < 1:1051881/143‑1 (MQ=255) ccAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGaa < 1:129400/143‑1 (MQ=255) cccccAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGAGTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCgg > 2:764378/1‑142 (MQ=255) cccAGCGGGCTGCCAGAACACATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGttt < 1:216167/143‑1 (MQ=255) ccAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTg < 1:798304/143‑1 (MQ=255) aGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGaa < 2:1017652/143‑1 (MQ=255) aGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCACCTGCGGTCCACGACCGCGGAcgcgccgtca > 2:1095079/1‑137 (MQ=255) cGGGCCGCCCGAACAGATAATGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGACCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACa < 2:268568/143‑1 (MQ=255) cGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACa > 2:908988/1‑143 (MQ=255) gggCCGCCAGAACAGATAATGCACCGTCTCCTGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAg < 1:1185290/143‑1 (MQ=255) ccgtccgAACAGATACTGCACCGTCTCCGGGGCCTGCTTCATCAACTAAGCAGATTTTCACTGACTGATCAGCCCTGACTGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATc < 2:163676/137‑1 (MQ=255) ccgccAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGACGCGTTTGCACAGacc > 1:884169/1‑141 (MQ=255) aTAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCtcttc < 2:677353/143‑1 (MQ=255) aTAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCtcttc < 2:681074/143‑1 (MQ=255) aTAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCtcttc < 2:874735/143‑1 (MQ=255) aTAAGGCACCGTCTCCGGTGCCTGGTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCTTGCATCGCATCCAACTGCGGTTCACGACCACGGAAGCGTCTGGACAGATCCATCGGCtcttc > 2:418171/1‑143 (MQ=255) | GCTCCGCCAACAAAATCAACAAAGATGCCGCCAAGTTTTGGCTCATCACGCTTGCGCAATTCCAGATGTTCCGGCGTTAACACCAGCGCCATCAGGTTGTCTTCATCGTGCTCCAGCCCCCAGCGGGCCGCCAGAACAGATAAGGCACCGTCTCCGGTGCCTGTTTCATCAATTAAGCAGATTTTCACTGAATGATCAGCCCTTAATGCCGTAATGCTCCAGCATCGCATCCAGCTGCGGTTCACGACCACGGAAGCGTTTGAACAGATCCATCGGCTCTTC > NC_000913/3642945‑3643226 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |