| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,173,363 | Δ2 bp | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,361 | 0 | C | . | 88.6% | 121.3 / 7.7 | 35 | pseudogene (2/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base C (0/4); new base . (14/17); total (14/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 2,173,362 | 0 | C | . | 91.2% | 123.0 / 5.1 | 35 | pseudogene (1/442 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base C (0/3); new base . (14/17); total (14/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.51e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGG > NC_000913/2173222‑2173498 || tttCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGCTTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATaccaccgc > 1:243376/1‑141 (MQ=255) cACGACACACGGCACCCGCCCTCGCCACGCAGACGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTCCCTGGCACACAAACAGCAATTAAAATGGTGAGTGGTATAAAAATCAGGCTTGCCGATaccaccgccgta < 1:525622/143‑7 (MQ=255) gcccGGCGACCGCCACCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTccc < 2:433939/140‑1 (MQ=255) cGGCGCCCGCCATCGCCACGACGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCcagc < 2:733876/143‑1 (MQ=255) ggtgACCGCCTTCTCTTCGGAGGAGGCGATGGTGGCAAGGTCGCCAAACGGCAGCTCCGGATTGCGCGGTACACATGCAGCAGTTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCcagca < 2:465119/140‑1 (MQ=255) ccGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCGCACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑GAAc > 1:724853/1‑143 (MQ=255) ccGCCACAGCGACGAAGAAGCAGATGGTGGCAAGACCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAAc < 1:934027/143‑1 (MQ=255) cGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACg > 1:680086/1‑143 (MQ=255) ccACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATCTCCCAGCAG‑CAACGCCGGATCa > 1:22114/1‑143 (MQ=255) cACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGGCCCAGCAC‑CAACGCCGGATcca > 2:19704/1‑141 (MQ=255) cACGAAGAAGCCGATGGCGGGAAGAGCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCaa < 1:636433/143‑1 (MQ=255) aCGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCGGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAg < 1:322960/143‑1 (MQ=255) cGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGACGATACCA‑‑CCGCCGTATGTCCCAGCCA‑AAAGATCGGATCAAgg > 2:707337/1‑143 (MQ=255) gaagCCGAGGGTGGCAAGACCGCGAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGGGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCaa < 2:478532/143‑1 (MQ=255) ccGATCGGGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAg < 2:165532/143‑1 (MQ=255) gATGGTGGCAAGATCGCCAAAAGGCAGCACCTGATTACCCGGCACACAAAAAGCAACAGTGATCGTACACAGAAAAAAAAACAGACATGCCGATACCA‑‑CCGCCGTATGGCCCAGCAG‑CAACGGCGGATCAAGGCCCATCAGGa > 2:679271/1‑143 (MQ=255) gATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccg < 1:758080/143‑1 (MQ=255) aTTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGAc < 1:634782/143‑1 (MQ=255) ccGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGACTGTAAAAGACTACGa > 2:484944/1‑143 (MQ=255) cacaATCAGCAATTAAAATGGTGAGTGGGATAAAGATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGc < 2:751350/143‑1 (MQ=255) aaaCAGCAATTAAAATGGTGAGTGGGATAACAATCAGGCCTGCCGATAC‑‑CGCCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTa < 2:569289/143‑1 (MQ=255) aGCAATTAAAATGGGGAGTGGGATAAAAATCAGGCTTGCCGATAC‑‑CCGCG‑CGGATACGGTAGCCGTCTACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGa < 1:441247/143‑1 (MQ=255) gCAATCAAAATCGTGAGTGGGATAAACATCAGCCTTGCCGATAC‑‑CCCCGCCGGATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAt < 1:428616/143‑1 (MQ=255) ttAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCGGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGc < 2:680086/143‑1 (MQ=255) aaaaTGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGt < 2:521576/143‑1 (MQ=255) aaaaGGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGt < 2:368605/143‑1 (MQ=255) aaaTGGGGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGtt < 2:504763/143‑1 (MQ=255) ggAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCTGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcca < 2:470803/142‑1 (MQ=255) gAGTGGGATAAAAATGAGGCTTGCCGATACCA‑‑CCGCGGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATGAGGAACTCCTGACCGCCGAACTTCGCCTGGAACAGACTACGAGCCTGCTTAGCGATCGGCGCTAAAcaaa > 2:118985/1‑140 (MQ=255) aTAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCGATCAGGACCTCATGACCGCCGAACTTCGCCTGTAAACGACTACGAGACTGCTTAGCGATGGGCGTTAAACCATCCatgat > 1:202866/1‑143 (MQ=255) tAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGCACTTCGCCTGCAAACGACTACGAGCCTGCTTAGCCATGGGCGTTAAACCATCCacgacg > 2:319455/1‑141 (MQ=255) aaaaaTCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATgg > 1:862767/1‑143 (MQ=255) aagcAGGCTGGCCGATAC‑‑CCCCGCCGTATGGCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGtt < 2:653097/140‑1 (MQ=255) aGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGCGCGTTAAACCATCCATGCTGGGTCTAAt > 1:300808/1‑143 (MQ=255) ttGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTCAACCATCCATGATGGGTTTCATCAcc > 1:287117/1‑143 (MQ=255) ttGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAcc < 2:724853/143‑1 (MQ=255) ttGCCGATACCA‑‑CCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAcc > 1:866781/1‑143 (MQ=255) gatacccccGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTgg < 1:769287/138‑1 (MQ=255) || TTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAG‑CAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGG > NC_000913/2173222‑2173498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |