| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,380 | 1 | . | C | 87.9% | 75.3 / 6.8 | 34 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (1/3); new base C (14/15); total (15/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.07e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_000913 | 4,296,380 | 2 | . | G | 88.2% | 79.0 / 7.2 | 34 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (1/3); new base G (14/16); total (15/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑A‑‑CCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTG > NC_000913/4296304‑4296510 || aCGCTTGTTATCAGGTCTACGACAGACAGCGCAATACCATGATTTAGCACGATTTCGTAGGTCGGATAA‑GGCGTC‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGtt < 2:613408/143‑1 (MQ=11)aCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGTCCTATCTTAACCGtt < 2:806609/143‑1 (MQ=255) aGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc > 1:828306/1‑143 (MQ=255) ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGCTCT‑GGCGAT‑‑G‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTc < 1:745936/143‑1 (MQ=17) ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA‑GGAATTAAT‑‑A‑‑CCGCG‑TTAGGCATATA‑GAAGTAATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTGCCCGTTGGTTAATTTTTCAAACTCTTc > 1:221544/1‑143 (MQ=12) cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTGTCAGGCCTATCTTAACCGTTGGTTAATTTTTCCAACTCTTca > 1:281196/1‑143 (MQ=17) cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTCTCTTCACCGTTGGTTAATTTTTCATCCTCTTcc > 1:465233/1‑142 (MQ=14) cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATCTTCCAAACTCTTca > 2:372674/1‑143 (MQ=14) cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ATGCCGCA‑TCCGACATCAA‑CGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAcc < 1:618216/143‑1 (MQ=14) gcggAATAGGCTGATCTCGCGTGTTGTTGTAGGTCGGAGAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCg < 2:455323/143‑1 (MQ=17) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATTTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCgg > 1:730184/1‑143 (MQ=255) ccTGATTTAGCGTGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATTCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACCCCCGGTATCAAAc > 2:159347/1‑143 (MQ=18) ccTGATTTAGCGTGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAAc < 1:892479/143‑1 (MQ=255) ccTGATTTAGCGTGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAGCTATCAAACTCTTCACACCCGGCATCAAAc > 2:628230/1‑143 (MQ=17) ccTGATTTAGCGCGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAAc < 1:315184/143‑1 (MQ=255) aTTTGGCCTCATCTTCTAGGTCGGATAC‑GCCGTT‑‑T‑‑A‑‑CGCCACTTCGACAAGAACCTCCTGCTGCGAAGATTGGCTCGGCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCtt < 2:202059/143‑1 (MQ=255) tttAGCGTGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTc < 1:463395/143‑1 (MQ=255) ttgaGCGTGATTTTGTGGGCCCGATAAGGGCGTTA‑C‑‑G‑‑CGGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTc < 2:448315/140‑1 (MQ=21) ttAGTGTGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGGTGGTTAATTTTTCAACCTCTTCACGCCCGGTATCAAACCCTTcc > 2:327633/1‑143 (MQ=18) ttAGCGTGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑GCCGACATCAA‑TGCCTGAAGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTcc < 1:523783/143‑1 (MQ=21) tGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTCATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCAtcccg > 1:507422/1‑139 (MQ=21) tttGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCa < 1:167695/143‑1 (MQ=255) tttGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGATTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGGTAATGTTTCAAACTCTTCAAAACCGGTATCAAACCCTTGAATACAGcata > 2:264116/1‑140 (MQ=18) ttGTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGATTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCCCACCCGGTATCAAACCCTTCCATACAGCTCAg > 2:627271/1‑143 (MQ=25) gTAGGTCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGt < 1:785133/143‑1 (MQ=255) gTAGGTCGGATAA‑CGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGt < 2:709145/143‑1 (MQ=255) tCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTGTCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAAc < 2:281196/143‑1 (MQ=255) tCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAAc > 2:443181/1‑143 (MQ=255) tCGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCATTCCATACAGCTCCGGTTAAAc > 2:443166/1‑143 (MQ=25) gcGGATAA‑GGCGTT‑‑TTCG‑‑CCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAAc < 2:442816/142‑1 (MQ=255) ccGGATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAAc < 1:345042/142‑1 (MQ=255) ggATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCCAACTCTTCACACCCGGTATCAAACCCTTCCATACAACTAAGAATCAAACa > 1:371932/1‑143 (MQ=21) ggATAA‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCa < 1:308842/143‑1 (MQ=255) tca‑GGCGTT‑‑T‑‑ACGCCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTg < 1:65506/141‑1 (MQ=255) || ACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAA‑GGCGTT‑‑T‑‑A‑‑CCGCA‑TCCGACATCAA‑TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTG > NC_000913/4296304‑4296510 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |